MELO3C030878 (gene) Melon (DHL92) v4

Overview
NameMELO3C030878
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionSensor histidine kinase/response regulator
Locationchr04: 19873192 .. 19875723 (+)
RNA-Seq ExpressionMELO3C030878
SyntenyMELO3C030878
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCATCGGTGGTTCATGTACGCCGACGTACTTGACGACGTGGGCAATAAGGTATTTACTATGTCATTACCAAACGTCGGTAGTTACCCACTGCTGATGTGTTGACCATATCGGCGAACAATGTGTCGGCTGTAACACTTTGTCGACGTCGTTCCGTTCGCGTGTCGGGATTACCTTTGATGACGTGTCTCTCACGATACTCTTGTCAACATTCATTTCTGCATCAGCATAGCCTCTCCTGACGTGGATCTGACATCTACCGACGCATCGCTATGTCGTCAGACCCCCTTCTTCTTGTAGTGCTTTCTTAGTTTCCAAATTCATTATCTTGATTCCAGACTTCTTGTTAATCACTCTAAATATGTAGATGAATTGCTTCAGAAACTGCAACTCGGCGATTTGAAAGCCTCTCCCTCTCTCAGTGTTCTTGGGAAAAATTTATCTGCCACTGATGGTTGTCACTTGAGAATTCGTTTACTTATCACGACACAATTGGTGCATTACAATATTTGATGCACACCAAGCCTGATATCTCCTATATTGTTAACCACCTCAATTAGTTCTTGCAAAAACCTACAAACACTCATTGGCAAGGTGTCAAGAGAATCCTAGATTACATCAGTGGTACCAAAACATTTTGGACCTTATTTCAATCTCATGGAACTATGTCCATCACATCCTACTCTAATGCTAAACGGGTGTCAAATATTGATAATCGAATATCTATAGCTTCTTATCATGTTTGTATTGGCTCAAACCTTGGTTCTTGTCCTTTTAAGAAGCAAACTATTATGACACGTTCAAACACTGAGTCTAAATATCAAACTTAAGCTCATGCTACACCAAAAATAATTTGAATCAAACAGTTGCTTTCCGAGGTTGGTTTTGCTTCGTCATCAAAATCTATCTTATGGTGTGATAACATGAGCATTGAGGCTTTAGTTATAAACCCATCTTTCATGCCCACATTGAACATATTGAGATTAATGTGCATTTTAGTCTAAATTAAATTGCTCATGCATGGCATCTTTCAGGTTTATTACATATCGTCATCTGATCAGTTAGCTAATTGTCTTACGAAATTGCTTACACATTGACAATTTCAATGTCTTTGTACCAAACTATGGATATTTGATCTACCCTCTCGTTTGAGGGGATGTTAGGGAGAATTTTGAAATGAACAGAATTACTACGTCAGCCAAGAGCTCCAAGGTGTCACATCACCAATCACAAATGACACCTAAAAGTATTATATAACCTTCAATTGGTTAGACAATAACCAATTAGCCTGTGTCATTGGTAAACATTGTATAATGTTTAGAAATATTAATTCTTTATTATTTCTTTTCCAAACTGGAAGGATTTATTGTGTATAAGTATTGCGTTGTTTAGGGCATATCAATCATTGAATATGGAGAAATCTTTTCCCAAAATATCTCAAGTATTTTCTTATTTAAGAAAACGTATTTATTCAGTAACATTGGCCACCTCTCAGAGATGCTTTTATGTTTCTGGAAAGATATTTCTTCTTCAGATTGTGCTTCTCCCCTCTTTATTTAGGATTTTTTTGTTTATGTCTGTATAAAATAAAAACTAAATTGATATTTTTTTTATGTAAATATTGCTAATTTGCTAATTGTGTATTATTGTAAGAAAAATAAATAAAATTTAGGTTTTCCAATTAACTCAAACTAACTTTTAAGAAGAAGCAATGATCAACAAAAACAATCTATAAAGTAAGTCAATTAAATCCGAATTCAGAAGAACCCAACAAATATTTTGATAACTAGAAACGATTAATATCCTCATATATTAATTATCACCGGAAGCCGTAAGTAAATACACAACAAAACAACAATTATTCATTCCATCGCCAAGTCAGTACCTCGTTTACTCTTACAAGCCAAGTGAAAATGGGAATCCTGTGGAGCTCAGCCAGGTGCCGCCGCCGATGAAATTCCCCGCCGTGAAGGCCTCCGCTTCCGCCGCCCTGGTAAGAACCCTAAACCCCTTCCACCTCACTCTCCTCGACGTATCGGCACCGGCACCACTATTCTGATACTCTGCATAAAACAGAGTATCAAGCGCAAAATTCCCATCCCAAACATGCCACCCCGCCGGATCAATCACATTGCTAATACTCGTCTGCATAACCACCGTTCTCGAGTATCTCTGCCACGGCCGCCCCAGAAACGTTGGGAAATTGCTGATCACCGGCCGCAAATCGGAGGTGGTTCCGATTCGGCATTTCTGAATGACAATCCCAGTGTTCTGATTTGGGTCTGTTCTTCCTTGTGCAGTGACCATGTTCCTCTGGCCGGGATTGGGGCGGCGGGCGTGGATGTCGCAGTCTTGGATGACGGCAGCGGCATTGCCGAAGATGAAGTCGATGGTGCCGACGATGATGCACTGGACGTAGAATTGGCGGTTGGAGTGGACGTAGAGTGTGTCTTGATAGGCGAGCATGTCGCAGCGGTAAAAAGCAGAGAGGTCGGAGCCAACACGGAGAGCCACCGCTTGGTGCTTTGA

mRNA sequence

ATGTTGCATCGGTGGTTCATGTACGCCGACGTACTTGACGACGTGGGCAATAAGTACCTCGTTTACTCTTACAAGCCAAGTGAAAATGGGAATCCTGTGGAGCTCAGCCAGGTGCCGCCGCCGATGAAATTCCCCGCCGTGAAGGCCTCCGCTTCCGCCGCCCTGAGTATCAAGCGCAAAATTCCCATCCCAAACATGCCACCCCGCCGGATCAATCACATTGCTAATACTCGTCTGCATAACCACCGTTCTCGAGTATCTCTGCCACGGCCGCCCCAGAAACGTTGGGAAATTGCTGATCACCGGCCGCAAATCGGAGGTGGTTCCGATTCGGCATTTCTGAATGACAATCCCAGTGTTCTGATTTGGGTCTGTTCTTCCTTGTGCAGTGACCATGTTCCTCTGGCCGGGATTGGGGCGGCGGGCGTGGATGTCGCAGTCTTGGATGACGGCAGCGGCATTGCCGAAGATGAAGTCGATGGTGCCGACGATGATGCACTGGACGTAGAATTGGCGGTTGGAGTGGACGTAGAGTGTGTCTTGATAGGCGAGCATGTCGCAGCGGTAAAAAGCAGAGAGGTCGGAGCCAACACGGAGAGCCACCGCTTGGTGCTTTGA

Coding sequence (CDS)

ATGTTGCATCGGTGGTTCATGTACGCCGACGTACTTGACGACGTGGGCAATAAGTACCTCGTTTACTCTTACAAGCCAAGTGAAAATGGGAATCCTGTGGAGCTCAGCCAGGTGCCGCCGCCGATGAAATTCCCCGCCGTGAAGGCCTCCGCTTCCGCCGCCCTGAGTATCAAGCGCAAAATTCCCATCCCAAACATGCCACCCCGCCGGATCAATCACATTGCTAATACTCGTCTGCATAACCACCGTTCTCGAGTATCTCTGCCACGGCCGCCCCAGAAACGTTGGGAAATTGCTGATCACCGGCCGCAAATCGGAGGTGGTTCCGATTCGGCATTTCTGAATGACAATCCCAGTGTTCTGATTTGGGTCTGTTCTTCCTTGTGCAGTGACCATGTTCCTCTGGCCGGGATTGGGGCGGCGGGCGTGGATGTCGCAGTCTTGGATGACGGCAGCGGCATTGCCGAAGATGAAGTCGATGGTGCCGACGATGATGCACTGGACGTAGAATTGGCGGTTGGAGTGGACGTAGAGTGTGTCTTGATAGGCGAGCATGTCGCAGCGGTAAAAAGCAGAGAGGTCGGAGCCAACACGGAGAGCCACCGCTTGGTGCTTTGA

Protein sequence

MLHRWFMYADVLDDVGNKYLVYSYKPSENGNPVELSQVPPPMKFPAVKASASAALSIKRKIPIPNMPPRRINHIANTRLHNHRSRVSLPRPPQKRWEIADHRPQIGGGSDSAFLNDNPSVLIWVCSSLCSDHVPLAGIGAAGVDVAVLDDGSGIAEDEVDGADDDALDVELAVGVDVECVLIGEHVAAVKSREVGANTESHRLVL
Homology
BLAST of MELO3C030878 vs. NCBI nr
Match: KAB8081163.1 (hypothetical protein EE612_002112, partial [Oryza sativa] >BAS71791.1 Os01g0312600, partial [Oryza sativa Japonica Group])

HSP 1 Score: 106.7 bits (265), Expect = 2.4e-19
Identity = 65/149 (43.62%), Postives = 87/149 (58.39%), Query Frame = 0

Query: 57  IKRKIPIPNMPPRRINHIANTRLHNHRSRVSLPRPPQKRWEIADHRPQIGGGSDSAFLND 116
           ++R++  P  PP  ++     RLH HR+ V LP   +   E      ++GGG   A L+ 
Sbjct: 50  VEREVAAPLEPPGGVDDAVELRLHEHRAGVLLPGAAEVGLEAGLDGEEVGGGGHLALLDG 109

Query: 117 NPSVLIWVCSSLCSDHVPLAGIGAAGVDVAVLDDGSGIAEDEVDGADDDALDVELAVGVD 176
           +  VL+ V   L    V L G  AA V+VA L+D  G+AEDEVDGA D AL  ELA GVD
Sbjct: 110 DAGVLVGVLPPLRGVDVALVGERAARVEVAALEDDGGVAEDEVDGAVDVALAEELAEGVD 169

Query: 177 VECVLIGEHVAAVKSREVGANTESHRLVL 206
           VE VL+ +  A V+ R+VGA+ + HRLVL
Sbjct: 170 VEGVLVADEAAPVERRQVGAHAQRHRLVL 198

BLAST of MELO3C030878 vs. NCBI nr
Match: RWW50514.1 (hypothetical protein BHE74_00043207, partial [Ensete ventricosum])

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-18
Identity = 68/148 (45.95%), Postives = 85/148 (57.43%), Query Frame = 0

Query: 58  KRKIPIPNMPPRRINHIANTRLHNHRSRVSLPRPPQKRWEIADHRPQIGGGSDSAFLNDN 117
           +R+  IP  PPRR +     RLH HR RV LPRP +   E+  HR ++      A L+ +
Sbjct: 54  QREAAIPLQPPRRGDQAVEVRLHEHRPRVLLPRPAEVGGEVGLHRDKVRRRRHLAPLDGD 113

Query: 118 PSVLIWVCSSLCSDHVPLAGIGAAGVDVAVLDDGSGIAEDEVDGADDDALDVELAVGVDV 177
             VL+ V   L  + V L      GV+VAVL+    +AEDEVDGA D A  VELA GVDV
Sbjct: 114 AGVLVRVFPPLRREDVLLVRQRLPGVEVAVLEHHRRVAEDEVDGAVDIAFSVELAEGVDV 173

Query: 178 ECVLIGEHVAAVKSREVGANTESHRLVL 206
           E VL+    A V+  EVGA+ ESH LVL
Sbjct: 174 EGVLVAYEAAPVEGGEVGADPESHGLVL 201

BLAST of MELO3C030878 vs. NCBI nr
Match: KVI05833.1 (hypothetical protein Ccrd_015829 [Cynara cardunculus var. scolymus])

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-16
Identity = 50/95 (52.63%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 96  WEIADHRPQIGGGSDSAFLNDNPSVLIWVCSSLCSDHVPLAGIGAAGVDVAVLDDGSGIA 155
           W+   HR +I  G++ AFLN NP VLI V ++L   HVPL GIGA GVDV +L+DG  +A
Sbjct: 108 WKTPLHRLEIRSGTNPAFLNHNPCVLIRVGAALGCQHVPLTGIGATGVDVTILEDGGRVA 167

Query: 156 EDEVDGADDDALDVELAVGVDVECVLIGEHVAAVK 191
           EDEVD A + A++VEL V VD++ VL+ +HV  +K
Sbjct: 168 EDEVDRASNQAVNVELTVTVDIKGVLVSQHVTLIK 202

BLAST of MELO3C030878 vs. NCBI nr
Match: GAV87321.1 (hypothetical protein CFOL_v3_30747, partial [Cephalotus follicularis])

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-14
Identity = 50/118 (42.37%), Postives = 78/118 (66.10%), Query Frame = 0

Query: 88  LPRPPQKRWEIADHRPQIGGGSDSAFLNDNPSVLIWVCSSLCSDHVPLAGIGAAGVDVAV 147
           LP P +  W+  +H  QI  G+D  FL+ N  VL+ V S+L  DH+PLA I + G+ V +
Sbjct: 1   LPWPSKICWKATNHGLQIRSGTDPTFLDYNARVLVRVASALSCDHIPLACIWSTGMYVTI 60

Query: 148 LDDGSGIAEDEVDGADDDALDVELAVGVDVECVLIGEHVAAVKSREVGANTESHRLVL 206
           L++G  IA+ +++ A D A+DV+L + VD+E VL+  HV  V+SREV ++++ + LVL
Sbjct: 61  LENGRRIAKYKINSAGDVAVDVKLTISVDIEGVLVCYHVTLVESREVSSHSKCNSLVL 118

BLAST of MELO3C030878 vs. NCBI nr
Match: CAA7394999.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-14
Identity = 66/155 (42.58%), Postives = 87/155 (56.13%), Query Frame = 0

Query: 56  SIKRKIPIPNMPPRRINHIANTRLHNHRSRVSLPRPPQ-KRWEIADHRPQIGG----GSD 115
           S++ ++P P  P    + +   RLH+H  RV LPRPPQ +RW     R + GG      D
Sbjct: 75  SVQGEVPRPWQPSLLPDPLPQIRLHHHSPRVLLPRPPQVRRWR--RRRRRHGGVFFLEDD 134

Query: 116 SAFLNDNPSVLIWVCSSLCSDHVPLAGIGAAGVDVAVLDDGSGIAEDEVDGADDDALDVE 175
            A ++    VLI V +++    V L G  +AG DVAVL+DG G+A+DEVD A D AL  E
Sbjct: 135 VAGVDGEAGVLIRVLAAVGRHGVLLVGERSAGGDVAVLEDGGGVAKDEVDSAADAALAEE 194

Query: 176 LAVGVDVECVLIGEHVAAVKSREVGANTESHRLVL 206
           LA GV VE VL+   + A    EV    + HRLVL
Sbjct: 195 LAQGVGVERVLVAGDLRAEVGGEVRVRPQRHRLVL 227

BLAST of MELO3C030878 vs. ExPASy TrEMBL
Match: T1LCV8 (Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-21
Identity = 66/149 (44.30%), Postives = 91/149 (61.07%), Query Frame = 0

Query: 57  IKRKIPIPNMPPRRINHIANTRLHNHRSRVSLPRPPQKRWEIADHRPQIGGGSDSAFLND 116
           ++R+  +P  PP R++   +  LH H   V LPRP +   E+  H  ++GGG D A L+ 
Sbjct: 49  VEREGAVPLEPPARVHQALHLGLHEHGPGVGLPRPAEVGGEVRQHGDEVGGGGDLAALHG 108

Query: 117 NPSVLIWVCSSLCSDHVPLAGIGAAGVDVAVLDDGSGIAEDEVDGADDDALDVELAVGVD 176
           +  VL+ V ++L  + V LAG  AA V+ AVL+   G+AEDEVDGA D A+ VELA  V 
Sbjct: 109 DAGVLVGVLAALRREDVLLAGARAARVEAAVLEHDGGVAEDEVDGAVDVAVTVELAERVR 168

Query: 177 VECVLIGEHVAAVKSREVGANTESHRLVL 206
           VE VL+    AAV+ REV  + + HRLVL
Sbjct: 169 VERVLVPREAAAVEGREVRVHPQRHRLVL 197

BLAST of MELO3C030878 vs. ExPASy TrEMBL
Match: A0A0P0V1P5 (Os01g0312600 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0312600 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.2e-19
Identity = 65/149 (43.62%), Postives = 87/149 (58.39%), Query Frame = 0

Query: 57  IKRKIPIPNMPPRRINHIANTRLHNHRSRVSLPRPPQKRWEIADHRPQIGGGSDSAFLND 116
           ++R++  P  PP  ++     RLH HR+ V LP   +   E      ++GGG   A L+ 
Sbjct: 50  VEREVAAPLEPPGGVDDAVELRLHEHRAGVLLPGAAEVGLEAGLDGEEVGGGGHLALLDG 109

Query: 117 NPSVLIWVCSSLCSDHVPLAGIGAAGVDVAVLDDGSGIAEDEVDGADDDALDVELAVGVD 176
           +  VL+ V   L    V L G  AA V+VA L+D  G+AEDEVDGA D AL  ELA GVD
Sbjct: 110 DAGVLVGVLPPLRGVDVALVGERAARVEVAALEDDGGVAEDEVDGAVDVALAEELAEGVD 169

Query: 177 VECVLIGEHVAAVKSREVGANTESHRLVL 206
           VE VL+ +  A V+ R+VGA+ + HRLVL
Sbjct: 170 VEGVLVADEAAPVERRQVGAHAQRHRLVL 198

BLAST of MELO3C030878 vs. ExPASy TrEMBL
Match: T1M318 (Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.5e-19
Identity = 79/178 (44.38%), Postives = 101/178 (56.74%), Query Frame = 0

Query: 38  VPPPMKFPA-VKASASAAL-----SIKRKIPIPNMPPRRINHIANTRLHNHRSRVSLPRP 97
           VP P+  PA V+ SA   +       +R++  P  P RR++   + RLH+HR+RV LPRP
Sbjct: 14  VPRPVHPPARVRPSAGVVVLGVVERGEREVAAPRHPARRVDEPGHVRLHDHRARVHLPRP 73

Query: 98  PQKRWEIADHRPQIGG----GSDSAFLNDNPSVLIWVCSSLCSDHVPLAGIGAAGVDVAV 157
           PQ          ++GG    G D A L+    VL+ V ++L  D V LAG G A V+ AV
Sbjct: 74  PQVG---GGGEGRVGGELRRGHDGAALDGGARVLVRVGAALRRDGVALAGHGEAVVERAV 133

Query: 158 LDDGSGIAEDEVDGADDDALDVELAVGVDVECVLIGEHVAAVKSREVGANTESHRLVL 206
           L+   G+AED VDGA D A  VELA GV VE VL+    A V+ REVG   E HRLVL
Sbjct: 134 LEHDGGVAEDVVDGAVDVARAVELAEGVGVERVLVPLEAALVERREVGPAPERHRLVL 188

BLAST of MELO3C030878 vs. ExPASy TrEMBL
Match: T1MIL2 (Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.9e-19
Identity = 76/181 (41.99%), Postives = 98/181 (54.14%), Query Frame = 0

Query: 32  PVELSQVPPPMKFPAVKASASAALSI-------KRKIPIPNMPPRRINHIANTRLHNHRS 91
           PV    VP P+  P  +A     + +       +R++P+P  PP R++  A  RLH HR 
Sbjct: 18  PVRDDAVPRPLDAPG-RAGPGPLVRVLPVEERAEREVPVPLQPPPRVDVRAQVRLHVHRP 77

Query: 92  RVSLPRPPQKRWEIADHRPQIGGGSDSAFLNDNPSVLIWVCSSLCSDHVPLAGIGAAGVD 151
           RV LPRP Q+R     H  Q+  G D+A L     VL+ V  +L  D V LA  G A  D
Sbjct: 78  RVGLPRPAQERRGRLGHGRQVVRGHDAAPLEGCARVLVRVRPALRGDRVLLAVRGPARGD 137

Query: 152 VAVLDDGSGIAEDEVDGADDDALDVELAVGVDVECVLIGEHVAAVKSREVGANTESHRLV 206
            AVL+    +AEDEVDGA D+A+ VEL   V VE VL+    AAV    VGA+ + HRLV
Sbjct: 138 HAVLEHDRRVAEDEVDGAGDEAVAVELPQLVRVEGVLVAVDAAAVYDGAVGAHAQGHRLV 197

BLAST of MELO3C030878 vs. ExPASy TrEMBL
Match: A0A124SGA9 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_015829 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 50/95 (52.63%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 96  WEIADHRPQIGGGSDSAFLNDNPSVLIWVCSSLCSDHVPLAGIGAAGVDVAVLDDGSGIA 155
           W+   HR +I  G++ AFLN NP VLI V ++L   HVPL GIGA GVDV +L+DG  +A
Sbjct: 108 WKTPLHRLEIRSGTNPAFLNHNPCVLIRVGAALGCQHVPLTGIGATGVDVTILEDGGRVA 167

Query: 156 EDEVDGADDDALDVELAVGVDVECVLIGEHVAAVK 191
           EDEVD A + A++VEL V VD++ VL+ +HV  +K
Sbjct: 168 EDEVDRASNQAVNVELTVTVDIKGVLVSQHVTLIK 202

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAB8081163.12.4e-1943.62hypothetical protein EE612_002112, partial [Oryza sativa] >BAS71791.1 Os01g03126... [more]
RWW50514.11.6e-1845.95hypothetical protein BHE74_00043207, partial [Ensete ventricosum][more]
KVI05833.12.5e-1652.63hypothetical protein Ccrd_015829 [Cynara cardunculus var. scolymus][more]
GAV87321.11.1e-1442.37hypothetical protein CFOL_v3_30747, partial [Cephalotus follicularis][more]
CAA7394999.13.1e-1442.58unnamed protein product [Spirodela intermedia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
T1LCV83.7e-2144.30Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1[more]
A0A0P0V1P51.2e-1943.62Os01g0312600 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01... [more]
T1M3184.5e-1944.38Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1[more]
T1MIL25.9e-1941.99Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1[more]
A0A124SGA91.2e-1652.63Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_015... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030878.1MELO3C030878.1mRNA