MELO3C030842 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030842
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Zinc finger BED domain-containing protein RICESLEEPER 3-like
Location	chr11: 25546743 .. 25548538 (+)
RNA-Seq Expression	MELO3C030842
Synteny	MELO3C030842

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCTTGAAGCTGCTGTTAAGTTTGAAAAAGCTTTTGATAGATTAGAAGATGAAGATGCCTCGTATAGACATGATATGTCACCGAATAAGGAAGATTGGACAAATGCTAGGATGTTAATACGATTTTTAAAAGTATTTTATGATGTCACATTAAAGATTTCGGGTTCTTTGTATACTACTTCGAACTTGGTTTTCCATCAGATTACAGTGGTTCAGAATTGTATACGTTTGAATGCGGGTAGTGCAAATGCATTGTTAGTTGGAATGGCTAATAACATGAAGGCAAAATTCGAGAAATATTGGGGAAACAATGAAAAGAATAATTTGTTGTTATATGTTGCTATTGTGTTGGATTCTCGAAAGAAATTAAGATTTGTATCTTTTTGTTTCAAAATTTTTTTTGGTCCCGAGGTTGCTGAATCCATGGGAAATGTAGTGGAACAATGTTGTAGACGTCTCTTTCATGAGTATAGTACTACTCGAAGTGGGAGTAGACAAGGATGTAGTAGTACTAGTACAACTAGTACACAAACTGTTTCAGGCTTGGATGCTAATATTGATTTTGATTTGAATGAAAATGTGGGTGAAGATTTTGTCTACGACACGATTGTTAAGAAATCTGAAGATGATTCTACTACACCTTTCGAACAGGGATCATCGGAGATTGATATCTATTTGTTGGAAGCCAACGTTAGGACCGAAGGTGATTTTGACATACTACAGTAGTAGAAGATGAACAGTGATCGATTTGAGGTTCTTGGTCAAATGGCTAGAAATATTTTGGCTATTCCAGTTTCTACTGTAGCGTCTGATTCGGCTTTTAGTACTGAAGGACGTGTTGTTGACTCATCACGCTGCTCATTGGCTCCTAAAACAGTGGAGGCTCTCATATGTACTCAAAATTGGCTAAATTCTGATTCAATACATCTTCAATTTCAACATGAATTGGAAGAGGCTTCAAAATTTGAAGAAGGTATTTTCAAATCTTTACATGATATCTTTTGTAGTTGTAATGTGTAACTTTAGTGAAATCTTAAATTATTTAGTAAATTCTTCATATTGATTATGTAGGATTTCGGGTGGTTATGGAGAATGAAAAGGAGCTTGAAGACCTTCCAGATTTTGATAAGTTGTCAATTACCGATTATTAACTAATTCTGATCCAAGACTTGTAATATTTCTATTGACTAGATTATCATAGTGTTTTTGTTTCATACTTTGGTTGTATTTGTGACTATTAATAGTAATGTGGTGAACTTAATTGAACTTGGATGTTTCTAACCCTATAATATTTGATATATATTTGATTTTGGTAGTATGTTTAGATTCTTATTTTTATGTTGTTTATTTTATTAATTTGTGTATTACCTATGAACTAAGCATTGAAATTAATAGAACTTGATTTTATTTTTTAATCACAATTATATGATTTTAAGACAATATAGAATATATATCGTAGACTTTTTTTATTGAAATTAAAAAGTGAACTAAAACATAATAACGTCATTCTTAGTTTTTAAAATCGTTTGTTTATCAAAAAGAAAGCAAGGAACATAGAAAAGGAAAGAGGAGGAGGAGAAGAAACAGGAAGGAAGGAAGGAAAGAAAGAAAGAAAGAAAGAAAAAAAAACCGACCGACCCGAACCGAACCGATCGCCGGTTGGACCAGTCGGTTTGGTTAGAACCGGCGGTCGAGGCCGGTTTTCATACTTCCGTGCCGACTTGTAGTCGGTTCGGGGCGGTTTGGTCGGAAAACCGACCCCGACCGTCCGATGCTCACCCCTAATTTTCATC

mRNA sequence

ATGATGCTTGAAGCTGCTGTTAAGTTTGAAAAAGCTTTTGATAGATTAGAAGATGAAGATGCCTCGTATAGACATGATATGTCACCGAATAAGGAAGATTGGACAAATGCTAGGATTTTTTTTGGTCCCGAGGTTGCTGAATCCATGGGAAATGTAGTGGAACAATGTTGTAGACGTCTCTTTCATGAGTATAGTACTACTCGAAGTGGGAGTAGACAAGGATGTAGTAGTACTAGTACAACTAGTACACAAACTGTTTCAGGCTTGGATGCTAATATTGATTTTGATTTGAATGAAAATGTGGGTGAAGATTTTGTCTACGACACGATTGTTAAGAAATCTGAAGATGATTCTACTACACCTTTCGAACAGGGATCATCGGAGATTGATATCTATTTGTTGGAAGCCAACGTTAGGACCGAAGGTGATTTTGACATACTACAGTAGTAGAAGATGAACAGTGATCGATTTGAGGTTCTTGGTCAAATGGCTAGAAATATTTTGGCTATTCCAGTTTCTACTGTAGCGTCTGATTCGGCTTTTAGTACTGAAGGACGTGTTGTTGACTCATCACGCTGCTCATTGGCTCCTAAAACAGTGGAGGCTCTCATATGTACTCAAAATTGGCTAAATTCTGATTCAATACATCTTCAATTTCAACATGAATTGGAAGAGGCTTCAAAATTTGAAGAAGAAAGCAAGGAACATAGAAAAGGAAAGAGGAGGAGGAGAAGAAACAGGAAGGAAGGAAGGAAAGAAAGAAAGAAAGAAAGAAAAAAAAACCGACCGACCCGAACCGAACCGATCGCCGGTTGGACCAGTCGGTTTGGTTAGAACCGGCGGTCGAGGCCGGTTTTCATACTTCCGTGCCGACTTGTAGTCGGTTCGGGGCGGTTTGGTCGGAAAACCGACCCCGACCGTCCGATGCTCACCCCTAATTTTCATC

Coding sequence (CDS)

ATGATGCTTGAAGCTGCTGTTAAGTTTGAAAAAGCTTTTGATAGATTAGAAGATGAAGATGCCTCGTATAGACATGATATGTCACCGAATAAGGAAGATTGGACAAATGCTAGGATTTTTTTTGGTCCCGAGGTTGCTGAATCCATGGGAAATGTAGTGGAACAATGTTGTAGACGTCTCTTTCATGAGTATAGTACTACTCGAAGTGGGAGTAGACAAGGATGTAGTAGTACTAGTACAACTAGTACACAAACTGTTTCAGGCTTGGATGCTAATATTGATTTTGATTTGAATGAAAATGTGGGTGAAGATTTTGTCTACGACACGATTGTTAAGAAATCTGAAGATGATTCTACTACACCTTTCGAACAGGGATCATCGGAGATTGATATCTATTTGTTGGAAGCCAACGTTAGGACCGAAGGTGATTTTGACATACTACAGTAG

Protein sequence

MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNARIFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTVSGLDANIDFDLNENVGEDFVYDTIVKKSEDDSTTPFEQGSSEIDIYLLEANVRTEGDFDILQ

Homology

[Close]

BLAST of MELO3C030842 vs. NCBI nr
Match: KAA0048465.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 258.1 bits (658), Expect = 4.7e-65
Identity = 132/149 (88.59%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 1   MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNARIFFG-PEVAESMGNVVEQCCRR 60
           MMLEA VKFEKAFDRLEDEDASYRHD+SPNKEDWTNA++     +VAESMGNVVEQCCRR
Sbjct: 273 MMLEAVVKFEKAFDRLEDEDASYRHDISPNKEDWTNAKMLIRFLKVAESMGNVVEQCCRR 332

Query: 61  LFHEYSTTRSGSRQGCSSTSTTSTQTVSGLDANIDFDLNENVGEDFVYDTIVKKSEDDST 120
           LFHEYSTTRSGSRQGCSSTSTTSTQTVSGL+ANI FD NENVGEDFVYDTIV+K EDD T
Sbjct: 333 LFHEYSTTRSGSRQGCSSTSTTSTQTVSGLNANIAFDSNENVGEDFVYDTIVEKFEDDPT 392

Query: 121 TPFEQGSSEIDIYLLEANVRTEGDFDILQ 149
           TPFEQGSSEIDIYLL+ANVRTEGDFDILQ
Sbjct: 393 TPFEQGSSEIDIYLLKANVRTEGDFDILQ 421

[Close]

BLAST of MELO3C030842 vs. NCBI nr
Match: KAA0047654.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 250.4 bits (638), Expect = 9.9e-63
Identity = 139/210 (66.19%), Postives = 143/210 (68.10%), Query Frame = 0


Query: 1   MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTN------------------------ 60
           MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTN                        
Sbjct: 299 MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNITVVQNCIRLNAGSANALLVGMTN 358

Query: 61  --------------------------------------ARIFFGPEVAESMGNVVEQCCR 120
                                                  +IFFGPEVAESMGNVVEQCCR
Sbjct: 359 NMKAKFEKYWGNNEKNNLLSYVAIVLDPRKKLRFVSFCLKIFFGPEVAESMGNVVEQCCR 418

Query: 121 RLFHEYSTTRSGSRQGCSSTSTTSTQTVSGLDANIDFDLNENVGEDFVYDTIVKKSEDDS 149
           RLFHEYSTTRSGSRQGCSSTSTTSTQTVSG DANIDFD NENVGEDFVYDTIV++ EDDS
Sbjct: 419 RLFHEYSTTRSGSRQGCSSTSTTSTQTVSGFDANIDFDSNENVGEDFVYDTIVEEFEDDS 478

[Close]

BLAST of MELO3C030842 vs. NCBI nr
Match: TYK23433.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 247.7 bits (631), Expect = 6.4e-62
Identity = 144/242 (59.50%), Postives = 146/242 (60.33%), Query Frame = 0


Query: 1   MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNAR---------------------- 60
           MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNAR                      
Sbjct: 201 MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNARMLIRFLKVFYDVTLKISGSLYT 260

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 261 TSNLVFHQITVVQNCIRLNAGSANALLVGMANNMKAKFEKYWGNNEKNNLLLYVAIVLDP 320

Query: 121 ------------IFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV 149
                       IFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV
Sbjct: 321 RKKLRFVSFCLKIFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV 380

[Close]

BLAST of MELO3C030842 vs. NCBI nr
Match: TYK14363.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 247.7 bits (631), Expect = 6.4e-62
Identity = 144/242 (59.50%), Postives = 146/242 (60.33%), Query Frame = 0


Query: 1   MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNAR---------------------- 60
           MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNAR                      
Sbjct: 384 MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNARMLIRFLKVFYDVTLKISGSLYT 443

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 444 TSNLVFHQITVVQNCIRLNAGSANALLVGMANNMKAKFEKYWGNNEKNNLLLYVAIVLDP 503

Query: 121 ------------IFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV 149
                       IFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV
Sbjct: 504 RKKLRFVSFCLKIFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV 563

[Close]

BLAST of MELO3C030842 vs. NCBI nr
Match: TYK20578.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 247.7 bits (631), Expect = 6.4e-62
Identity = 144/242 (59.50%), Postives = 146/242 (60.33%), Query Frame = 0


Query: 1   MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNAR---------------------- 60
           MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNAR                      
Sbjct: 319 MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNARMLIRFLKVFYDVTLKISGSLYT 378

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 379 TSNLVFHQITVVQNCIRLNAGSANALLVGMANNMKAKFEKYWGNNEKNNLLLYVAIVLDP 438

Query: 121 ------------IFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV 149
                       IFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV
Sbjct: 439 RKKLRFVSFCLKIFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV 498

[Close]

BLAST of MELO3C030842 vs. ExPASy TrEMBL
Match: A0A5A7U4A9 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G00670 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.3e-65
Identity = 132/149 (88.59%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 1   MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNARIFFG-PEVAESMGNVVEQCCRR 60
           MMLEA VKFEKAFDRLEDEDASYRHD+SPNKEDWTNA++     +VAESMGNVVEQCCRR
Sbjct: 273 MMLEAVVKFEKAFDRLEDEDASYRHDISPNKEDWTNAKMLIRFLKVAESMGNVVEQCCRR 332

Query: 61  LFHEYSTTRSGSRQGCSSTSTTSTQTVSGLDANIDFDLNENVGEDFVYDTIVKKSEDDST 120
           LFHEYSTTRSGSRQGCSSTSTTSTQTVSGL+ANI FD NENVGEDFVYDTIV+K EDD T
Sbjct: 333 LFHEYSTTRSGSRQGCSSTSTTSTQTVSGLNANIAFDSNENVGEDFVYDTIVEKFEDDPT 392

Query: 121 TPFEQGSSEIDIYLLEANVRTEGDFDILQ 149
           TPFEQGSSEIDIYLL+ANVRTEGDFDILQ
Sbjct: 393 TPFEQGSSEIDIYLLKANVRTEGDFDILQ 421

[Close]

BLAST of MELO3C030842 vs. ExPASy TrEMBL
Match: A0A5A7TXF5 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G001450 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.8e-63
Identity = 139/210 (66.19%), Postives = 143/210 (68.10%), Query Frame = 0


Query: 1   MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTN------------------------ 60
           MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTN                        
Sbjct: 299 MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNITVVQNCIRLNAGSANALLVGMTN 358

Query: 61  --------------------------------------ARIFFGPEVAESMGNVVEQCCR 120
                                                  +IFFGPEVAESMGNVVEQCCR
Sbjct: 359 NMKAKFEKYWGNNEKNNLLSYVAIVLDPRKKLRFVSFCLKIFFGPEVAESMGNVVEQCCR 418

Query: 121 RLFHEYSTTRSGSRQGCSSTSTTSTQTVSGLDANIDFDLNENVGEDFVYDTIVKKSEDDS 149
           RLFHEYSTTRSGSRQGCSSTSTTSTQTVSG DANIDFD NENVGEDFVYDTIV++ EDDS
Sbjct: 419 RLFHEYSTTRSGSRQGCSSTSTTSTQTVSGFDANIDFDSNENVGEDFVYDTIVEEFEDDS 478

[Close]

BLAST of MELO3C030842 vs. ExPASy TrEMBL
Match: A0A5D3CR68 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G001050 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.1e-62
Identity = 144/242 (59.50%), Postives = 146/242 (60.33%), Query Frame = 0


Query: 1   MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNAR---------------------- 60
           MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNAR                      
Sbjct: 384 MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNARMLIRFLKVFYDVTLKISGSLYT 443

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 444 TSNLVFHQITVVQNCIRLNAGSANALLVGMANNMKAKFEKYWGNNEKNNLLLYVAIVLDP 503

Query: 121 ------------IFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV 149
                       IFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV
Sbjct: 504 RKKLRFVSFCLKIFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV 563

[Close]

BLAST of MELO3C030842 vs. ExPASy TrEMBL
Match: A0A5D3DAN8 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001750 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.1e-62
Identity = 144/242 (59.50%), Postives = 146/242 (60.33%), Query Frame = 0


Query: 1   MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNAR---------------------- 60
           MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNAR                      
Sbjct: 319 MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNARMLIRFLKVFYDVTLKISGSLYT 378

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 379 TSNLVFHQITVVQNCIRLNAGSANALLVGMANNMKAKFEKYWGNNEKNNLLLYVAIVLDP 438

Query: 121 ------------IFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV 149
                       IFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV
Sbjct: 439 RKKLRFVSFCLKIFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV 498

[Close]

BLAST of MELO3C030842 vs. ExPASy TrEMBL
Match: A0A5D3DIL8 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00350 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.1e-62
Identity = 144/242 (59.50%), Postives = 146/242 (60.33%), Query Frame = 0


Query: 1   MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNAR---------------------- 60
           MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNAR                      
Sbjct: 201 MMLEAAVKFEKAFDRLEDEDASYRHDMSPNKEDWTNARMLIRFLKVFYDVTLKISGSLYT 260

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 261 TSNLVFHQITVVQNCIRLNAGSANALLVGMANNMKAKFEKYWGNNEKNNLLLYVAIVLDP 320

Query: 121 ------------IFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV 149
                       IFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV
Sbjct: 321 RKKLRFVSFCLKIFFGPEVAESMGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV 380

The following BLAST results are available for this feature:

BLAST of MELO3C030842 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C030842 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048465.1	4.7e-65	88.59	transposase [Cucumis melo var. makuwa]	[more]
KAA0047654.1	9.9e-63	66.19	zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ...	[more]
TYK23433.1	6.4e-62	59.50	putative transposase [Cucumis melo var. makuwa]	[more]
TYK14363.1	6.4e-62	59.50	zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ...	[more]
TYK20578.1	6.4e-62	59.50	zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ...	[more]

BLAST of MELO3C030842 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U4A9	2.3e-65	88.59	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G00670 PE=...	[more]
A0A5A7TXF5	4.8e-63	66.19	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]
A0A5D3CR68	3.1e-62	59.50	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]
A0A5D3DAN8	3.1e-62	59.50	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]
A0A5D3DIL8	3.1e-62	59.50	Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605...	[more]

BLAST of MELO3C030842 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030842.1	MELO3C030842.1	mRNA