MELO3C030826 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030826
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	NB-ARC domain-containing protein
Location	chr04: 17548060 .. 17548494 (-)
RNA-Seq Expression	MELO3C030826
Synteny	MELO3C030826

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATGTATAGTTGCACCCGAAGAAGGAGAAGAAGAAAATGGTGAAATTGTTTTCAAAAACGTGGAAGAAATCGAAATATATGCCTTACCAAGACTAGCTTGCTTTCACAATGGAAAATGTACTATTAAGTTTCCATCAGAGATATTGTATACAGTTGGATCGTGTGAAATGGAGACATTTTCACATACAATACTAAGCTTGCCCAAATTGAAATACATAGGGATAGAAAAATGTGAATTTCAAATCTCGCCAGGCCAAGACATAAATGTCATTATCCGAACACGTTTTCAAATAATCCTCACAACCAAGTCTTTGACTCTAAGCATTCAGCCAACAAAGAAGCAAGAACAAAAAAAGTTCCAATTATCACAAATTAAAGAGGTGCGACAGAAAGCACACATGGAAACAAACAGAGATGGAGAACAAAACTAG

mRNA sequence

ATGAGATGTATAGTTGCACCCGAAGAAGGAGAAGAAGAAAATGGTGAAATTGTTTTCAAAAACGTGGAAGAAATCGAAATATATGCCTTACCAAGACTAGCTTGCTTTCACAATGGAAAATGTACTATTAAGTTTCCATCAGAGATATTGTATACAGTTGGATCGTGTGAAATGGAGACATTTTCACATACAATACTAAGCTTGCCCAAATTGAAATACATAGGGATAGAAAAATGTGAATTTCAAATCTCGCCAGGCCAAGACATAAATGTCATTATCCGAACACGTTTTCAAATAATCCTCACAACCAAGTCTTTGACTCTAAGCATTCAGCCAACAAAGAAGCAAGAACAAAAAAAGTTCCAATTATCACAAATTAAAGAGGTGCGACAGAAAGCACACATGGAAACAAACAGAGATGGAGAACAAAACTAG

Coding sequence (CDS)

ATGAGATGTATAGTTGCACCCGAAGAAGGAGAAGAAGAAAATGGTGAAATTGTTTTCAAAAACGTGGAAGAAATCGAAATATATGCCTTACCAAGACTAGCTTGCTTTCACAATGGAAAATGTACTATTAAGTTTCCATCAGAGATATTGTATACAGTTGGATCGTGTGAAATGGAGACATTTTCACATACAATACTAAGCTTGCCCAAATTGAAATACATAGGGATAGAAAAATGTGAATTTCAAATCTCGCCAGGCCAAGACATAAATGTCATTATCCGAACACGTTTTCAAATAATCCTCACAACCAAGTCTTTGACTCTAAGCATTCAGCCAACAAAGAAGCAAGAACAAAAAAAGTTCCAATTATCACAAATTAAAGAGGTGCGACAGAAAGCACACATGGAAACAAACAGAGATGGAGAACAAAACTAG

Protein sequence

MRCIVAPEEGEEENGEIVFKNVEEIEIYALPRLACFHNGKCTIKFPSEILYTVGSCEMETFSHTILSLPKLKYIGIEKCEFQISPGQDINVIIRTRFQIILTTKSLTLSIQPTKKQEQKKFQLSQIKEVRQKAHMETNRDGEQN

Homology

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BLAST of MELO3C030826 vs. NCBI nr
Match: XP_011659043.1 (probable disease resistance protein At4g27220 isoform X1 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-30
Identity = 69/99 (69.70%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 1    MRCIVAPEEGEEENGEIVFKNVEEIEIYALPRLACFHNGKCTIKFPSEILYTVG--SCEM 60
            MRCIV PE GEEENGEIVFKN++ I ++ LPRLACFHNGKC IKFPS  +  +G    EM
Sbjct: 1527 MRCIVTPEGGEEENGEIVFKNLKSIILFGLPRLACFHNGKCMIKFPSLEILNIGCRRYEM 1586

Query: 61   ETFSHTILSLPKLKYIGIEKCEFQISPGQDINVIIRTRF 98
            ETFSH ILS P LK + IE+CEF+ISPGQDINVIIR+ F
Sbjct: 1587 ETFSHGILSFPTLKSMEIEECEFKISPGQDINVIIRSHF 1625

[Close]

BLAST of MELO3C030826 vs. NCBI nr
Match: XP_031744707.1 (uncharacterized protein LOC101213664 isoform X3 [Cucumis sativus] >KAE8646109.1 hypothetical protein Csa_016362 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-30
Identity = 69/99 (69.70%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 1    MRCIVAPEEGEEENGEIVFKNVEEIEIYALPRLACFHNGKCTIKFPSEILYTVG--SCEM 60
            MRCIV PE GEEENGEIVFKN++ I ++ LPRLACFHNGKC IKFPS  +  +G    EM
Sbjct: 1313 MRCIVTPEGGEEENGEIVFKNLKSIILFGLPRLACFHNGKCMIKFPSLEILNIGCRRYEM 1372

Query: 61   ETFSHTILSLPKLKYIGIEKCEFQISPGQDINVIIRTRF 98
            ETFSH ILS P LK + IE+CEF+ISPGQDINVIIR+ F
Sbjct: 1373 ETFSHGILSFPTLKSMEIEECEFKISPGQDINVIIRSHF 1411

[Close]

BLAST of MELO3C030826 vs. NCBI nr
Match: XP_031744706.1 (probable disease resistance protein At4g27220 isoform X2 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-30
Identity = 69/99 (69.70%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 1    MRCIVAPEEGEEENGEIVFKNVEEIEIYALPRLACFHNGKCTIKFPSEILYTVG--SCEM 60
            MRCIV PE GEEENGEIVFKN++ I ++ LPRLACFHNGKC IKFPS  +  +G    EM
Sbjct: 1361 MRCIVTPEGGEEENGEIVFKNLKSIILFGLPRLACFHNGKCMIKFPSLEILNIGCRRYEM 1420

Query: 61   ETFSHTILSLPKLKYIGIEKCEFQISPGQDINVIIRTRF 98
            ETFSH ILS P LK + IE+CEF+ISPGQDINVIIR+ F
Sbjct: 1421 ETFSHGILSFPTLKSMEIEECEFKISPGQDINVIIRSHF 1459

[Close]

BLAST of MELO3C030826 vs. NCBI nr
Match: KAE8652339.1 (hypothetical protein Csa_022544 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-12
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 1   MRCIVAPEEGEEENGEIVFKNVEEIEIYALPRLACFHNGKCTIKFPS 48
           MRCIVA EEGEEENGEIVFK+++EI +Y LPRLA F NGKCTIKFPS
Sbjct: 176 MRCIVAAEEGEEENGEIVFKHLKEIILYGLPRLASFDNGKCTIKFPS 222

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BLAST of MELO3C030826 vs. NCBI nr
Match: XP_038887230.1 (probable disease resistance protein At5g63020 [Benincasa hispida])

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-11
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 1    MRCIVAPEEGEEENGEIVFKNVEEIEIYALPRLACFHNGKCTIKFPS-EILYTVGSCEME 60
            MR IV   +G+EE  EI+F  + E+++  L RLA FH+ KC +KFPS E L   G  EM+
Sbjct: 1249 MRSIVVQPKGKEEGEEIIFDKLNELKLSNLTRLASFHSEKCVLKFPSLEKLKISGCPEMK 1308

Query: 61   TFSHTILSLPKLKYIGIEKCEFQISPGQDINVII 94
            TFS+ I+S PKL ++  E  +  +S  Q +NVII
Sbjct: 1309 TFSYGIISTPKLSHVEGEGNKVSVSLAQGLNVII 1342

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BLAST of MELO3C030826 vs. ExPASy TrEMBL
Match: A0A0A0LNF6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G432260 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.0e-22
Identity = 58/76 (76.32%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1   MRCIVAPEEGEEENGEIVFKNVEEIEIYALPRLACFHNGKCTIKFPS-EILYTVGSCEME 60
           MRCIVA EEGEEENGEIVFK+++EI +Y LPRLA F NGKCTIKFPS E+LY  GS EME
Sbjct: 27  MRCIVAAEEGEEENGEIVFKHLKEIILYGLPRLASFDNGKCTIKFPSLEVLYIYGSYEME 86

Query: 61  TFSHTILSLPKLKYIG 76
           TFSH ILS PKLK  G
Sbjct: 87  TFSHGILSFPKLKSHG 102

[Close]

BLAST of MELO3C030826 vs. ExPASy TrEMBL
Match: A0A6J1FVN0 (probable disease resistance protein At4g27220 OS=Cucurbita moschata OX=3662 GN=LOC111448886 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.0e-10
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 1    MRCIVAPEEGEEENGEIVFKNVEEIEIYALPRLACFHNGKCTIKFPS-EILYTVGSCEME 60
            MRC+VA    EEE G +VF+ +  + +Y LP L  F+ GKC ++FP  + L+ +G  +M+
Sbjct: 1026 MRCVVA---AEEEQGGVVFRGLRRVRLYWLPELVSFYGGKCRVRFPKLDRLFILGCPKMK 1085

Query: 61   TFSHTILSLPKLKYIGIEKCEFQISPGQDINVIIR 95
            TFS  ++  PKL  + I+   F+++    +N  IR
Sbjct: 1086 TFSRGVVVTPKLDIVRIDVRYFEVAVDGGVNETIR 1117

[Close]

BLAST of MELO3C030826 vs. ExPASy TrEMBL
Match: A0A0A0K5R3 (NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G239020 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-08
Identity = 43/102 (42.16%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 1    MRCIVAPE-EGEEENGEIVFKNVEEIEIYALPRLACFHNGKCTIKFPSEILYTVGSC-EM 60
            MR +VA + E EEEN EIVF  +  +E + L  L CF+ GKCT++FP      +  C +M
Sbjct: 1243 MRTVVAAKAEEEEENVEIVFSKLTGMEFHNLAGLECFYPGKCTLEFPLLDTLRISKCDDM 1302

Query: 61   ETFSHTILSLPKLKYIGI-EKCEFQISPGQDINVIIRTRFQI 100
            + FS+ I + P LK I I E     + P Q IN II   F I
Sbjct: 1303 KIFSYGITNTPTLKNIEIGEHNSLPVLPTQGINDIIHAFFTI 1344

[Close]

BLAST of MELO3C030826 vs. ExPASy TrEMBL
Match: A0A7N2L4E4 (NB-ARC domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.3e-08
Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 5    VAPEEGEEENG-EIVFKNVEEIEIYALPRLACFHNGKCTIKFPS-EILYTVGSCEMETFS 64
            +   EGE E G EI F  +  + +Y LP L  FH G  TIKFPS E L   G  EM+ FS
Sbjct: 1348 IVTNEGEGEAGDEICFNQLNFLYLYDLPSLRSFHWGNRTIKFPSLEDLLLTGCPEMKIFS 1407

Query: 65   HTILSLPKLKYIGIEKCE-----FQISPGQDINVIIR 95
            + +LS+PKLK IG+++ E      ++ P +D+N  I+
Sbjct: 1408 NGVLSMPKLKIIGLDENERWAERRELLPEEDVNSAIK 1444

[Close]

BLAST of MELO3C030826 vs. ExPASy TrEMBL
Match: A0A7N2L2P0 (AAA domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 1    MRCIVAPEEGEEENGEIVFKNVEEIEIYALPRLACFHNGKCTIKFPS-EILYTVGSCEME 60
            MR IV  E   E   EI F  +  + +  LP L  FH G  TIKFPS E LY     EM+
Sbjct: 1338 MREIVTNEGEGEAGDEICFNQLNSLWLDDLPTLRSFHLGNRTIKFPSLEYLYVTRCPEMK 1397

Query: 61   TFSHTILSLPKLKYIGIEKCEF-----QISPGQDINVIIR 95
             FS+  LS+PKLK IG+++ ++     ++ P +D+N  I+
Sbjct: 1398 IFSNGFLSMPKLKKIGLDENKWLPKRRELLPEEDVNSAIK 1437

The following BLAST results are available for this feature:

BLAST of MELO3C030826 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659043.1	2.2e-30	69.70	probable disease resistance protein At4g27220 isoform X1 [Cucumis sativus]	[more]
XP_031744707.1	2.2e-30	69.70	uncharacterized protein LOC101213664 isoform X3 [Cucumis sativus] >KAE8646109.1 ...	[more]
XP_031744706.1	2.2e-30	69.70	probable disease resistance protein At4g27220 isoform X2 [Cucumis sativus]	[more]
KAE8652339.1	2.7e-12	80.85	hypothetical protein Csa_022544 [Cucumis sativus]	[more]
XP_038887230.1	1.0e-11	45.74	probable disease resistance protein At5g63020 [Benincasa hispida]	[more]

BLAST of MELO3C030826 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030826 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNF6	1.0e-22	76.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G432260 PE=4 SV=1	[more]
A0A6J1FVN0	6.0e-10	36.84	probable disease resistance protein At4g27220 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A0A0K5R3	1.9e-08	42.16	NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G239020 PE=4...	[more]
A0A7N2L4E4	3.3e-08	42.27	NB-ARC domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A7N2L2P0	1.2e-07	40.00	AAA domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of MELO3C030826 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030826.1	MELO3C030826.1	mRNA