MELO3C030762 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030762
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Aberrant root formation protein 4 isoform X1
Location	chr04: 11916462 .. 11919822 (-)
RNA-Seq Expression	MELO3C030762
Synteny	MELO3C030762

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGGAGACCCATAGCGACGGAGACCCACGACAAGGAGACCCATATCGTCACCGATGAGTTCTTGATCTTTCTTTTTTTGTTTCTTCTCCCTTCGTTCCCCTGAGTATTTAACTTTCTGCTCTGTTTCTTGGGTTCCCATTCCCACTTTTTCAATTTGGTTCCACTTTGGAGATTTTGCTTTTTCATCCACATATTCTTTGTGGGGTTTGTTTATTTTAGAGATTCCTGATGTTTTTGTTTTGATGTTGTTCTTTTTTATTTCATATGACTTCGTTTTGCATGATTTGGTTCTTCATTAATGAGATTTCTTTGGAGTATGTACGATTTCACTTCAAGATTTCATTATGTTTATATTTCGTTATGTTGATAGAAAGTTATGTTGAGGGGTCTCAATGTAGTGGAACTTGTATAAAATGTCCATGCCTATTCTATTACCATTTTGCTATGCTATTTGTCAAGTTTAAGTAGCTTCAAAGTTTAACTCATTGCATTTCAGCAGTCCAAAAGAATAGCTAAAGAATAGCTAATGAACTAATATTCACGGAAGAAAAAGATATGCAGCTTACAATGTGTTTGATTCTTCAAAAGTATTGTAACTCAAAAACATATTTTAACGATTTTGTGATTCTTTAAAGGTATATTGATGATTTTGTGAAATATATTTTTGGCTATGTGATGAAGCATTTTTGTAGCTTACAATGTGTTTGATGAAATGCCTCAATGAAGCATTTGGTTAATTTTTAAATTCTAAAGAACAAACTTCATTCATGCTTGTCTCATTGTTCATTTTTTCGGTTCGTTATTGAAAGTCTGGTTATAAAACTATCATTTTTAAGATTTTACGCAATGAACCTGAATGAAATTAAGTTTTTGGCAGTTGGTTTACCTGGCAGTAAGTTCTTTCGTTTAATGCGATGGTGACTTTTATAGATAAGAATCATATAAAATGTTTTCATGGGCAATGATTATGTACAATTAATTTCGTTTCTCCAAATGAAACATGGTGAACGAGTCCATGACTACTCTTGTATTGCGTTTAGTTGTTTTTTACAATGGCTGGATTTTTTTATATGGTGACAAATATCTATGGAATTTACGATTTTGTAGTAGAAGGGATGCACTAAAGGCCGTTGAGTCAACGAAAGAAGTAGCATCTAGTTTACTTGAGAAGAATTGGGGCCTGCATTTTGGTCTTTTAAGCCTTCATTTTATTAAACTTGCTTTTCTCTCTAGGAATGGTGAGAGCCCCCACATCATCACAAATTTATACAATCCTTGACCTTAAAACTCAATCTTTGACTGTTAGAGAGACATTATATATGGGCATTATGTTTAAACGATAGTCTATTGCAACCATTTCTTTCATATTTTAGTATAATTTATGAGCAATTTTTGTCAAAGACTTATGATGATTATCACTACATATTTTTAGGTCTCAAGGTGAGTAAAATACAAGCTTAAGCTATACTTTTATTGCATTTGTTTGTGACATATTGGTTTGGTTTAATTCACTAAAAGATCATCAGGGACTTGATTAGAAATTTCTTTTAAATTAACCACTTGTATCCTAAATGATTGTTGTTTTTATTCTATCATTATTGTTTATGTGTTTCCTTAGCATATATCAATCAGATCCCCTGAGTAAAAGTCTATTAACATTGTTTATGTCTCTAACTACGTTTTTTACTTTTTTTTTTTTTTTTGTTGGCAACAACAAAATGGGAGTGAAATCAAGTGAATGTATTGATTGATCTATGTAGATAATAACTGTTATTAATGTATTGAATTTGCAATTGTGTCATCTTCCCAGCGTGCGGGTTTCTAATGAGCTTGGACAAGGACATCCATTGGCAACCAAATATTTTGTCTATGTAACAATATTTTAGTCTTTCCTTCTTGGATTACTTTCCATGGTGATTATCTTAATCATGAAGGATCACTTTGCTGTCATTTACACAAGCAGTAATTTCAGGTGCCAAATCCACCATGTGTTTACAAGTCAGCAATAAGTTAATAAGATTCTCACTTTCTTCTTTAACTTTTCTCTGAGCTTGGTTAGCAAATGTTGGCCGCATGTATCAAATCTTGGCTCTTATTATGTTTTTGGTCTTCCCTTGGTTATTTTCTTGGTAATACGAAACATTTTGGAGTTCAGGTCAATAAATTTCCTTTCCCTTTTCTCCCAAATGAATACAAAACGATTAAAACACATAAATTGAAATGATGATTATGAGAGTCTTTTGGGAGTTTTCAACGATCTTAGATGGAGAGTAGATCTTATATATTATGCATGATCAACCATACCAAATGTAACATATATTCTTTATAATCACAGAGACTGTGGGGAGGCATGATCGGTGGACTTTATCTTCAAACCATTCTGCTTCTAATCACACTCTATAAAACAAACTGGATCCATGAGGTAAATCCTTAAAGTCATCAACCAAGTTCTTTCCTTCAGTTATATAGACATTGCGTTGTTTGTTTCTTTTCTATTTCTTCATAGTCCTTGTCTCCCATTTTCCTACTTATTAGTCTTATAAATTTCAAATCTTTGGTTTTCTTTCCCCCATTTTTTTTTTACTGAACTTTCAAAATATTATACTCTTTTAATCATTTAACATCCATTCCATTTTGAACTTTATCGAAAGAGAATAATCGGGAATCTATATGTAATGAAGTGTTATATTACACGTTTAAAAGCTGAGAAATAATGTTCCACAAAATTTAGTGATAGTTTGAAGAATTAAAATTGAAAATTTTGTCCGATATTATATTAAATTTGTCTTTCCCTAAGTTTAAATTTGATCTCATCAAATTTCTAAACGAAATTAGTGCTAACACCGGTAACTAATACCTATTTTTTAGTTTTCTTACAAATTTGTACCTATCTTTTCAGTAAGACATTATTATTTGTTTTTTTATTATTATCTGTTTTTTTTACTATGTTTGATACTATAATTTAGATATTGGGTATCTTTTGTAATGTTTTGAATTTTTTTTTCTAACCGATAGTTGAGAATTAAACTTTCAACCTTAGAGAGCTACATTTAGACGAATTTTTAGAGAGCTCAAATTTTATGTGTTGTTTTTTTTTCTTTTTTGATTAAGTTAAAATTATGAGCATTATTGTAACTTTATTACGGATGTTCAACATAGGTCAAACATTTGAGTGATTATTAGAGTCTCAACCTATGGAGTGTGAAAATTTCTATCTCTCGAATTTCTTAGAGTTCTATTACATATAGTATATTTTATAATTCTTTTGTAATTCGATTGTGTAGGACAACTCAAGAAGATACCTTAATAGGACAACTCTTGTTTTGCTTCTATTTGCCACTATCTATGCACATTGA

mRNA sequence

ATGGCGAGGAGACCCATAGCGACGGAGACCCACGACAAGGAGACCCATATCGTCACCGATGATAGAAGGGATGCACTAAAGGCCGTTGAGTCAACGAAAGAAGTAGCATCTAGTTTACTTGAGAAGAATTGGGGCCTGCATTTTGGAATGGTGAGAGCCCCCACATCATCACAAATTTATACAATCCTTGACCTTAAAACTCAATCTTTGACTACTTATGATGATTATCACTACATATTTTTAGGTCTCAAGATAATAACTGTTATTAATGTATTGAATTTGCAATTGTGTCATCTTCCCAGCGTGCGGGTTTCTAATGAGCTTGGACAAGGACATCCATTGGCAACCAAATATTTTGTCTATGTAACAATATTTTAGTCTTTCCTTCTTGGATTACTTTCCATGGTGATTATCTTAATCATGAAGGATCACTTTGCTGTCATTTACACAAGCAGTAATTTCAGGTGCCAAATCCACCATAGACTGTGGGGAGGCATGATCGGTGGACTTTATCTTCAAACCATTCTGCTTCTAATCACACTCTATAAAACAAACTGGATCCATGAGTTTAAATTTGATCTCATCAAATTTCTAAACGAAATTAGTGCTAACACCGTTAAAATTATGAGCATTATTGACAACTCAAGAAGATACCTTAATAGGACAACTCTTGTTTTGCTTCTATTTGCCACTATCTATGCACATTGA

Coding sequence (CDS)

ATGGCGAGGAGACCCATAGCGACGGAGACCCACGACAAGGAGACCCATATCGTCACCGATGATAGAAGGGATGCACTAAAGGCCGTTGAGTCAACGAAAGAAGTAGCATCTAGTTTACTTGAGAAGAATTGGGGCCTGCATTTTGGAATGGTGAGAGCCCCCACATCATCACAAATTTATACAATCCTTGACCTTAAAACTCAATCTTTGACTACTTATGATGATTATCACTACATATTTTTAGGTCTCAAGATAATAACTGTTATTAATGTATTGAATTTGCAATTGTGTCATCTTCCCAGCGTGCGGGTTTCTAATGAGCTTGGACAAGGACATCCATTGGCAACCAAATATTTTGTCTATGTAACAATATTTTAG

Protein sequence

MARRPIATETHDKETHIVTDDRRDALKAVESTKEVASSLLEKNWGLHFGMVRAPTSSQIYTILDLKTQSLTTYDDYHYIFLGLKIITVINVLNLQLCHLPSVRVSNELGQGHPLATKYFVYVTIF

Homology

[Close]

BLAST of MELO3C030762 vs. NCBI nr
Match: TYK06005.1 (protein DETOXIFICATION 35-like [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 8.7e-12
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 85  IITVINVLNLQLCHLPSVRVSNELGQGHPLATKYFVYVTIF 126
           IIT+INVLNLQLCHLPSVRVSNELGQGHP+ATKY VYVT+F
Sbjct: 288 IITIINVLNLQLCHLPSVRVSNELGQGHPMATKYSVYVTVF 328

[Close]

BLAST of MELO3C030762 vs. ExPASy TrEMBL
Match: A0A5D3C3Q2 (Protein DETOXIFICATION OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001030 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.2e-12
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 85  IITVINVLNLQLCHLPSVRVSNELGQGHPLATKYFVYVTIF 126
           IIT+INVLNLQLCHLPSVRVSNELGQGHP+ATKY VYVT+F
Sbjct: 288 IITIINVLNLQLCHLPSVRVSNELGQGHPMATKYSVYVTVF 328

[Close]

BLAST of MELO3C030762 vs. ExPASy TrEMBL
Match: A0A5A7UI91 (Aberrant root formation protein 4 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00870 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.5e-04
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 16  HIVTDDRRDALKAVESTKEVASSLLEKNWGLHFGMV 52
           H + D  RDALKAV+ TKEVAS LLEKNWGLHFG++
Sbjct: 102 HSIID--RDALKAVQLTKEVASGLLEKNWGLHFGLL 135

[Close]

BLAST of MELO3C030762 vs. TAIR 10
Match: AT4G25640.1 (detoxifying efflux carrier 35 )

HSP 1 Score: 41.2 bits (95), Expect = 7.2e-04
Identity = 19/25 (76.00%), Postives = 20/25 (80.00%), Query Frame = 0


Query: 101 SVRVSNELGQGHPLATKYFVYVTIF 126
           SVRVSNELG G P A KY VYVT+F
Sbjct: 317 SVRVSNELGLGRPRAAKYSVYVTVF 341

[Close]

BLAST of MELO3C030762 vs. TAIR 10
Match: AT4G25640.2 (detoxifying efflux carrier 35 )

HSP 1 Score: 41.2 bits (95), Expect = 7.2e-04
Identity = 19/25 (76.00%), Postives = 20/25 (80.00%), Query Frame = 0


Query: 101 SVRVSNELGQGHPLATKYFVYVTIF 126
           SVRVSNELG G P A KY VYVT+F
Sbjct: 317 SVRVSNELGLGRPRAAKYSVYVTVF 341

The following BLAST results are available for this feature:

BLAST of MELO3C030762 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06005.1	8.7e-12	90.24	protein DETOXIFICATION 35-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C030762 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030762 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C3Q2	4.2e-12	90.24	Protein DETOXIFICATION OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3...	[more]
A0A5A7UI91	5.5e-04	72.22	Aberrant root formation protein 4 isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of MELO3C030762 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25640.1	7.2e-04	76.00	detoxifying efflux carrier 35	[more]
AT4G25640.2	7.2e-04	76.00	detoxifying efflux carrier 35	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030762.1	MELO3C030762.1	mRNA