MELO3C030613.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C030613.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCalsequestrin-1-like
Locationchr04: 20462395 .. 20462885 (-)
RNA-Seq ExpressionMELO3C030613.jh1
SyntenyMELO3C030613.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAAGATGAAGATCCTCTTGGTAGCAACACTTTGAAGATGAAGATGATGGTCCTTTCGGCTACAACACATGGGAGAAGATGAAGATGAAGATCCTTTTGGCTGCAACACATGAGAGACGATGAAGATGAAAATGATTATCTTCTTGGCTGCAACATATTGAAGATGAAGATGAAGATGAAGATCCTCTCGACTGTAACACATATGAGAAGATGAAGATGAAGATCCTTTTAGTTGTGGCTGTATTGAAGACGAAGATGAAGATGATCCTCTCAGCTGTGGTCGCATTGAAGATGAAGATGAAGATAATCCTTTCGACTATGATCGTATTTAAGGAAAAGATGAAGATGAAGATGATTCTCTCGGTTGCGGTCGTATTGAAGACGAAGATGAATATGGTCCTCTCAGTTGCGCTTGCATTAAAAATGAAGATGAAGATAATCCTTCCGGCTGCGACCGTATTGAAGACAAAGATGATGATCCTCTCA

mRNA sequence

ATGGCAGAAGATGAAGATCCTCTTGGTAGCAACACTTTGAAGATGAAGATGATGCTGTAACACATATGAGAAGATGAAGATGAAGATCCTTTTAGTTGTGGCTGTATTGAAGACGAAGATGAAGATGATCCTCTCAGCTGTGGTCGCATTGAAGATGAAGATGAAGATAATCCTTTCGACTATGATCGTATTTAAGGAAAAGATGAAGATGAAGATGATTCTCTCGGTTGCGGTCGTATTGAAGACGAAGATGAATATGGTCCTCTCAGTTGCGCTTGCATTAAAAATGAAGATGAAGATAATCCTTCCGGCTGCGACCGTATTGAAGACAAAGATGATGATCCTCTCA

Coding sequence (CDS)

ATGAAGATGAAGATCCTTTTAGTTGTGGCTGTATTGAAGACGAAGATGAAGATGATCCTCTCAGCTGTGGTCGCATTGAAGATGAAGATGAAGATAATCCTTTCGACTATGATCGTATTTAAGGAAAAGATGAAGATGAAGATGATTCTCTCGGTTGCGGTCGTATTGAAGACGAAGATGAATATGGTCCTCTCAGTTGCGCTTGCATTAAAAATGAAGATGAAGATAATCCTTCCGGCTGCGACCGTATTGAAGACAAAGATGATGATCCTCTCA

Protein sequence

MKMKILLVVAVLKTKMKMILSAVVALKMKMKIILSTMIVFKEKMKMKMILSVAVVLKTKMNMVLSVALALKMKMKIILPAATVLKTKMMILS
Homology
[Close]
BLAST of MELO3C030613.jh1 vs. NCBI nr
Match: KAA0068082.1 (calsequestrin-1-like [Cucumis melo var. makuwa] >TYK26066.1 calsequestrin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (331), Expect = 9.63e-38
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0 

Query: 1  MKMKILLVVAVLKTKMKMILSAVVALKMKMKIILSTMIVFKEKMKMKMILSVAVVLKTKM 60
          MKMKILLVVA LKTKMKMILS VVALKMKMKIILSTMIVFKEKMKMKMILSVAVVLKTKM
Sbjct: 1  MKMKILLVVAALKTKMKMILSPVVALKMKMKIILSTMIVFKEKMKMKMILSVAVVLKTKM 60

Query: 61 NMVLSVALALKMKMKIILPAATVLKTKMMILS 92
          NMVLSVALALKMKMKIILPAATVLKTKMMILS
Sbjct: 61 NMVLSVALALKMKMKIILPAATVLKTKMMILS 92

[Close]
BLAST of MELO3C030613.jh1 vs. NCBI nr
Match: KAA0041112.1 (prostatic spermine-binding protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 2.87e-06
Identity = 50/95 (52.63%), Postives = 61/95 (64.21%), Query Frame = 0 

Query: 9   VAVLKTKMKMILSAVVALKMKMKIILSTMIVFKEKMKM----------KMILSVAVVLKT 68
           VAVLKT MK+I  A   LK K+++ILS ++V K+KMKM          KMILSV  VLKT
Sbjct: 522 VAVLKTNMKLIFLATTILKTKIEMILSNVVVMKKKMKMVLSSATVSKMKMILSVVAVLKT 581

Query: 69  KMNMVLSVALALKMKMKIILPAATVLKTKM-MILS 92
           KM ++L  A  LKMK ++IL     LK KM MILS
Sbjct: 582 KMKIILLAAAILKMKKEMILSTEAALKMKMKMILS 616

[Close]
BLAST of MELO3C030613.jh1 vs. NCBI nr
Match: KAA0033095.1 (calsequestrin-1-like [Cucumis melo var. makuwa] >TYK17137.1 calsequestrin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 52.0 bits (123), Expect = 4.86e-06
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 43  KMKMKMILSVAVVLKTKMNMVLSVALALKMKMKIILPAATVLKTKMMIL 91
           K KMKMILSV V LK KMNMVL  A+ LK KM++IL AA VLKTKMMIL
Sbjct: 64  KAKMKMILSVVVALKMKMNMVLLAAIELKTKMQMILLAAVVLKTKMMIL 112

[Close]
BLAST of MELO3C030613.jh1 vs. NCBI nr
Match: TYK21906.1 (prostatic spermine-binding protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 52.8 bits (125), Expect = 1.87e-05
Identity = 48/104 (46.15%), Postives = 60/104 (57.69%), Query Frame = 0 

Query: 9   VAVLKTKMKMILSAVVALKMKMKIILSTMIVFKEKMKM----------KMILSVAVVLKT 68
           +AVLKT MK+I  A   LK K+++ILS +++ K+KMKM          KMILSV  VLKT
Sbjct: 510 IAVLKTNMKLIFLATTILKTKIEMILSNVVIMKKKMKMVLSSATVSKMKMILSVVAVLKT 569

Query: 69  KMN--------------MVLSVALALKMKMKIILPAATVLKTKM 88
           KM               M+LS   ALKMKMK+IL  A + KT M
Sbjct: 570 KMKIILLDAAILKMKKEMILSTEAALKMKMKMILTTAVISKTNM 613

[Close]
BLAST of MELO3C030613.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DR33 (Calsequestrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00220 PE=4 SV=1)

HSP 1 Score: 132 bits (331), Expect = 4.66e-38
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0 

Query: 1  MKMKILLVVAVLKTKMKMILSAVVALKMKMKIILSTMIVFKEKMKMKMILSVAVVLKTKM 60
          MKMKILLVVA LKTKMKMILS VVALKMKMKIILSTMIVFKEKMKMKMILSVAVVLKTKM
Sbjct: 1  MKMKILLVVAALKTKMKMILSPVVALKMKMKIILSTMIVFKEKMKMKMILSVAVVLKTKM 60

Query: 61 NMVLSVALALKMKMKIILPAATVLKTKMMILS 92
          NMVLSVALALKMKMKIILPAATVLKTKMMILS
Sbjct: 61 NMVLSVALALKMKMKIILPAATVLKTKMMILS 92

[Close]
BLAST of MELO3C030613.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TCC0 (Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00150 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.39e-06
Identity = 50/95 (52.63%), Postives = 61/95 (64.21%), Query Frame = 0 

Query: 9   VAVLKTKMKMILSAVVALKMKMKIILSTMIVFKEKMKM----------KMILSVAVVLKT 68
           VAVLKT MK+I  A   LK K+++ILS ++V K+KMKM          KMILSV  VLKT
Sbjct: 522 VAVLKTNMKLIFLATTILKTKIEMILSNVVVMKKKMKMVLSSATVSKMKMILSVVAVLKT 581

Query: 69  KMNMVLSVALALKMKMKIILPAATVLKTKM-MILS 92
           KM ++L  A  LKMK ++IL     LK KM MILS
Sbjct: 582 KMKIILLAAAILKMKKEMILSTEAALKMKMKMILS 616

[Close]
BLAST of MELO3C030613.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SVA6 (Calsequestrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00760 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.35e-06
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 43  KMKMKMILSVAVVLKTKMNMVLSVALALKMKMKIILPAATVLKTKMMIL 91
           K KMKMILSV V LK KMNMVL  A+ LK KM++IL AA VLKTKMMIL
Sbjct: 64  KAKMKMILSVVVALKMKMNMVLLAAIELKTKMQMILLAAVVLKTKMMIL 112

[Close]
BLAST of MELO3C030613.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DE84 (Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00440 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.04e-06
Identity = 48/104 (46.15%), Postives = 60/104 (57.69%), Query Frame = 0 

Query: 9   VAVLKTKMKMILSAVVALKMKMKIILSTMIVFKEKMKM----------KMILSVAVVLKT 68
           +AVLKT MK+I  A   LK K+++ILS +++ K+KMKM          KMILSV  VLKT
Sbjct: 510 IAVLKTNMKLIFLATTILKTKIEMILSNVVIMKKKMKMVLSSATVSKMKMILSVVAVLKT 569

Query: 69  KMN--------------MVLSVALALKMKMKIILPAATVLKTKM 88
           KM               M+LS   ALKMKMK+IL  A + KT M
Sbjct: 570 KMKIILLDAAILKMKKEMILSTEAALKMKMKMILTTAVISKTNM 613

The following BLAST results are available for this feature:
BLAST of MELO3C030613.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0068082.19.63e-3897.83calsequestrin-1-like [Cucumis melo var. makuwa] >TYK26066.1 calsequestrin-1-like... [more]
KAA0041112.12.87e-0652.63prostatic spermine-binding protein-like [Cucumis melo var. makuwa][more]
KAA0033095.14.86e-0673.47calsequestrin-1-like [Cucumis melo var. makuwa] >TYK17137.1 calsequestrin-1-like... [more]
TYK21906.11.87e-0546.15prostatic spermine-binding protein-like [Cucumis melo var. makuwa][more]
BLAST of MELO3C030613.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C030613.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DR334.66e-3897.83Calsequestrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold118... [more]
A0A5A7TCC01.39e-0652.63Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7SVA62.35e-0673.47Calsequestrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold103... [more]
A0A5D3DE849.04e-0646.15Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of MELO3C030613.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030613.jh1.t1MELO3C030613.jh1.t1mRNA