MELO3C030594 (gene) Melon (DHL92) v4

Overview
NameMELO3C030594
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCell division protein ftsH
Locationchr07: 6724727 .. 6725058 (+)
RNA-Seq ExpressionMELO3C030594
SyntenyMELO3C030594
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTGTAGAAGCAAAAGATGCCTAGGGTCGAGACTGAAAAATATTAAATCAAACAAGGATGATTCTATTGTGATCGACGATAATATAAAGGTATATTTCTTATTTACTGAATTTAAAATTTAAATTGTACAGATAGTTAAACACAAATATAATATGTGTATTTATGGTAGGAGGAAGTAAGAAATGAAGAACCAAAGGAATATCAATCACTACAAATTATATATCCAGAAGATGATGATGAAGACTTAAGAGAACCGATAGGTACACAGATTGTGGTGTACCAAAATCAAAAGTTTGTGAAAACGGATGTGGTGTTTGAAACTCCAAAA

mRNA sequence

ATGGTTTGTAGAAGCAAAAGATGCCTAGGGTCGAGACTGAAAAATATTAAATCAAACAAGGATGATTCTATTGTGATCGACGATAATATAAAGGAGGAAGTAAGAAATGAAGAACCAAAGGAATATCAATCACTACAAATTATATATCCAGAAGATGATGATGAAGACTTAAGAGAACCGATAGGTACACAGATTGTGGTGTACCAAAATCAAAAGTTTGTGAAAACGGATGTGGTGTTTGAAACTCCAAAA

Coding sequence (CDS)

ATGGTTTGTAGAAGCAAAAGATGCCTAGGGTCGAGACTGAAAAATATTAAATCAAACAAGGATGATTCTATTGTGATCGACGATAATATAAAGGAGGAAGTAAGAAATGAAGAACCAAAGGAATATCAATCACTACAAATTATATATCCAGAAGATGATGATGAAGACTTAAGAGAACCGATAGGTACACAGATTGTGGTGTACCAAAATCAAAAGTTTGTGAAAACGGATGTGGTGTTTGAAACTCCAAAA

Protein sequence

MVCRSKRCLGSRLKNIKSNKDDSIVIDDNIKEEVRNEEPKEYQSLQIIYPEDDDEDLREPIGTQIVVYQNQKFVKTDVVFETPK
Homology
BLAST of MELO3C030594 vs. NCBI nr
Match: TYK30586.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-23
Identity = 55/84 (65.48%), Postives = 77/84 (91.67%), Query Frame = 0

Query: 1  MVCRSKRCLGSRLKNIKSNKDDSIVIDDNIKEEVRNEEPKEYQSLQIIYPEDDDEDLREP 60
          MV RS+RCLGSRLK IKS+KD+SI+I+DN++E++RNEEP +YQ +QIIYP+DD+E+L+ P
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEEELQGP 60

Query: 61 IGTQIVVYQNQKFVKTDVVFETPK 85
           GTQIVVY ++KF++TD+VF+TP+
Sbjct: 61 TGTQIVVYDDKKFMRTDMVFKTPE 84

BLAST of MELO3C030594 vs. NCBI nr
Match: KAA0043162.1 (uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK12303.1 uncharacterized protein E5676_scaffold302G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 2.4e-21
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 0

Query: 1  MVCRSKRCLGSRLKNIKSNKDDSIVIDDNIKEEVRNEEPKEYQSLQIIYPEDDDEDLREP 60
          MV RS+RCLG +LK IKSNKDD IVI DN +EEVR EEP +Y+ LQ IY +DD+++LR P
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60

Query: 61 IGTQIVVYQNQKFVKTDVVFETPK 85
            T IVVYQNQKFVKT+VVFETPK
Sbjct: 61 TDTLIVVYQNQKFVKTNVVFETPK 84

BLAST of MELO3C030594 vs. NCBI nr
Match: KAA0066916.1 (Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 9.4e-10
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 0

Query: 1  MVCRSKRCLGSRLKNIKSNKDDSIVIDDNIKEEVRNEEPKEYQSLQIIYPEDDDEDLREP 60
          MV +S RCLGSR+K++KSNKDD I+I+D              +    +Y  DD+ +LR P
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDT-------------EVCGTVYKGDDEYELRGP 60

Query: 61 IGTQIVVYQNQKFVKTDVVFETPK 85
            TQI++Y+ +K+VK DVVFETPK
Sbjct: 61 TCTQIMLYEEKKYVKPDVVFETPK 71

BLAST of MELO3C030594 vs. NCBI nr
Match: KAA0035692.1 (Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-07
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 28 DNIKEEVRNEEPKEYQSLQIIYPEDDDEDLREPIGTQIVVYQNQKFVKTDVVFETPK 85
          D+I++E R EE   Y+ LQ +YP D + +LR P GTQIV+Y+ +K+VK DVVFETP+
Sbjct: 3  DDIEDEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPE 59

BLAST of MELO3C030594 vs. NCBI nr
Match: TYK30853.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.2e-06
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 29  NIKEEVRNEEPKEYQSLQIIYPEDDDEDLREPIGTQIVVYQNQKFVKTDVVFETPK 85
           N  +E R EE   Y+ LQ +YP D + +LR P GTQIV+Y+ +K+VK DVVFETP+
Sbjct: 142 NRADEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPE 197

BLAST of MELO3C030594 vs. ExPASy TrEMBL
Match: A0A5D3E3X1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00070 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.2e-24
Identity = 55/84 (65.48%), Postives = 77/84 (91.67%), Query Frame = 0

Query: 1  MVCRSKRCLGSRLKNIKSNKDDSIVIDDNIKEEVRNEEPKEYQSLQIIYPEDDDEDLREP 60
          MV RS+RCLGSRLK IKS+KD+SI+I+DN++E++RNEEP +YQ +QIIYP+DD+E+L+ P
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEEELQGP 60

Query: 61 IGTQIVVYQNQKFVKTDVVFETPK 85
           GTQIVVY ++KF++TD+VF+TP+
Sbjct: 61 TGTQIVVYDDKKFMRTDMVFKTPE 84

BLAST of MELO3C030594 vs. ExPASy TrEMBL
Match: A0A5A7TIM3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00690 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 0

Query: 1  MVCRSKRCLGSRLKNIKSNKDDSIVIDDNIKEEVRNEEPKEYQSLQIIYPEDDDEDLREP 60
          MV RS+RCLG +LK IKSNKDD IVI DN +EEVR EEP +Y+ LQ IY +DD+++LR P
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60

Query: 61 IGTQIVVYQNQKFVKTDVVFETPK 85
            T IVVYQNQKFVKT+VVFETPK
Sbjct: 61 TDTLIVVYQNQKFVKTNVVFETPK 84

BLAST of MELO3C030594 vs. ExPASy TrEMBL
Match: A0A5A7VKG5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00090 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.5e-10
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 0

Query: 1  MVCRSKRCLGSRLKNIKSNKDDSIVIDDNIKEEVRNEEPKEYQSLQIIYPEDDDEDLREP 60
          MV +S RCLGSR+K++KSNKDD I+I+D              +    +Y  DD+ +LR P
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDT-------------EVCGTVYKGDDEYELRGP 60

Query: 61 IGTQIVVYQNQKFVKTDVVFETPK 85
            TQI++Y+ +K+VK DVVFETPK
Sbjct: 61 TCTQIMLYEEKKYVKPDVVFETPK 71

BLAST of MELO3C030594 vs. ExPASy TrEMBL
Match: A0A5A7SWP5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G003940 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.3e-08
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 28 DNIKEEVRNEEPKEYQSLQIIYPEDDDEDLREPIGTQIVVYQNQKFVKTDVVFETPK 85
          D+I++E R EE   Y+ LQ +YP D + +LR P GTQIV+Y+ +K+VK DVVFETP+
Sbjct: 3  DDIEDEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPE 59

BLAST of MELO3C030594 vs. ExPASy TrEMBL
Match: A0A5D3E406 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00510 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.0e-06
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 29  NIKEEVRNEEPKEYQSLQIIYPEDDDEDLREPIGTQIVVYQNQKFVKTDVVFETPK 85
           N  +E R EE   Y+ LQ +YP D + +LR P GTQIV+Y+ +K+VK DVVFETP+
Sbjct: 142 NRADEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPE 197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK30586.11.5e-2365.48protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0043162.12.4e-2170.24uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK1... [more]
KAA0066916.19.4e-1047.62Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division ... [more]
KAA0035692.11.5e-0754.39Cell division protein ftsH [Cucumis melo var. makuwa][more]
TYK30853.12.2e-0653.57retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E3X17.2e-2465.48Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00... [more]
A0A5A7TIM31.2e-2170.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VKG54.5e-1047.62Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5A7SWP57.3e-0854.39Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A5D3E4061.0e-0653.57Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030594.1MELO3C030594.1mRNA