MELO3C030589 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030589
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Flocculation protein FLO11-like
Location	chr04: 17854406 .. 17854693 (-)
RNA-Seq Expression	MELO3C030589
Synteny	MELO3C030589

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATTGTTTCAAGGCTCTCATATTCCAAATGTTGCTGTTGAATTTGAAAATGCGCCTAGAGGGACCGGGGCTGCTGCTGCTATGCATTCTACTGTTGGTCAGCCTCTGGTCCTCTCTGTCCCGTTAGCCAATCGGCTGTTGTAAGCATTGATGGCAGAATCTCGCTCCCTCACTCACCATATCAATGAGCTTTTTGTTAGGCAAACTGTGTTGGATGCTGTTCTACGTGACCTTCGGTGTGTGGCTTCAAGACCTCCTGCTTCTTCGCCAGATCGTTAGGGATGA

mRNA sequence

ATGCGATTGTTTCAAGGCTCTCATATTCCAAATGTTGCTGTTGAATTTGAAAATGCGCCTAGAGGGACCGGGGCTGCTGCTGCTATGCATTCTACTGTTGGTCAGCCTCTGGTCCTCTCTGTCCCGTTAGCCAATCGGCTGTTGTAAGCATTGATGGCAGAATCTCGCTCCCTCACTCACCATATCAATGAGCTTTTTGTTAGGCAAACTGTGTTGGATGCTGTTCTACGTGACCTTCGGTGTGTGGCTTCAAGACCTCCTGCTTCTTCGCCAGATCGTTAGGGATGA

Coding sequence (CDS)

ATGCGATTGTTTCAAGGCTCTCATATTCCAAATGTTGCTGTTGAATTTGAAAATGCGCCTAGAGGGACCGGGGCTGCTGCTGCTATGCATTCTACTGTTGGTCAGCCTCTGGTCCTCTCTGTCCCGTTAGCCAATCGGCTGTTGTAA

Protein sequence

MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL

Homology

[Close]

BLAST of MELO3C030589 vs. NCBI nr
Match: XP_008464024.1 (PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL 49
           MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL
Sbjct: 372 MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL 419

[Close]

BLAST of MELO3C030589 vs. NCBI nr
Match: KAA0058484.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK07262.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL 49
           MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL
Sbjct: 389 MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL 436

[Close]

BLAST of MELO3C030589 vs. NCBI nr
Match: KAA0062468.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 4.1e-10
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL 49
           MRLFQGSHIP+V   F NAP GT AAAA +STVGQPL+LS+PLAN LL
Sbjct: 923 MRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLL 970

[Close]

BLAST of MELO3C030589 vs. NCBI nr
Match: TYK27414.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 4.1e-10
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL 49
           MRLFQGSHIP+V   F NAP GT AAAA +STVGQPL+LS+PLAN LL
Sbjct: 916 MRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLL 963

[Close]

BLAST of MELO3C030589 vs. NCBI nr
Match: KAA0035370.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 5.4e-10
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL 49
           MRLFQGSHIP+VA  FENAPRGT A AA + T+GQPLVLS+ LA RLL
Sbjct: 68  MRLFQGSHIPDVAAAFENAPRGTSATAATNLTIGQPLVLSMSLATRLL 115

[Close]

BLAST of MELO3C030589 vs. ExPASy TrEMBL
Match: A0A5D3C7L1 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001600 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL 49
           MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL
Sbjct: 389 MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL 436

[Close]

BLAST of MELO3C030589 vs. ExPASy TrEMBL
Match: A0A1S3CL10 (uncharacterized protein LOC103502008 OS=Cucumis melo OX=3656 GN=LOC103502008 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL 49
           MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL
Sbjct: 372 MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL 419

[Close]

BLAST of MELO3C030589 vs. ExPASy TrEMBL
Match: A0A5D3DV74 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001030 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL 49
           MRLFQGSHIP+V   F NAP GT AAAA +STVGQPL+LS+PLAN LL
Sbjct: 916 MRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLL 963

[Close]

BLAST of MELO3C030589 vs. ExPASy TrEMBL
Match: A0A5A7V4G0 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00570 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL 49
           MRLFQGSHIP+V   F NAP GT AAAA +STVGQPL+LS+PLAN LL
Sbjct: 923 MRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLL 970

[Close]

BLAST of MELO3C030589 vs. ExPASy TrEMBL
Match: A0A5A7SWE9 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold597G00060 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-10
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   MRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL 49
           MRLFQGSHIP+VA  FENAPRGT A AA + T+GQPLVLS+ LA RLL
Sbjct: 68  MRLFQGSHIPDVAAAFENAPRGTSATAATNLTIGQPLVLSMSLATRLL 115

The following BLAST results are available for this feature:

BLAST of MELO3C030589 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464024.1	3.5e-17	100.00	PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo]	[more]
KAA0058484.1	3.5e-17	100.00	flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK07262.1 flocculat...	[more]
KAA0062468.1	4.1e-10	75.00	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]
TYK27414.1	4.1e-10	75.00	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]
KAA0035370.1	5.4e-10	75.00	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C030589 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030589 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C7L1	1.7e-17	100.00	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CL10	1.7e-17	100.00	uncharacterized protein LOC103502008 OS=Cucumis melo OX=3656 GN=LOC103502008 PE=...	[more]
A0A5D3DV74	2.0e-10	75.00	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7V4G0	2.0e-10	75.00	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7SWE9	2.6e-10	75.00	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of MELO3C030589 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030589.1	MELO3C030589.1	mRNA