Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTCCCTGGAGGAGGAAACTGGAGTATGATCCCCAACATCCCTAATCTCACCAATTCCTCCAATCTTTCACAAGAATCCATCTTTCTCCAACAGCAACAATTTTCTCTTCAACATCAGCAGCAGCAGCAGCAGCAGCAAGCATTTCACCACCAACAACAGCAATTTCAGCCCCAAATTCAACCCCAACAGCAATTCCAGCAGCAACAGCTCTCCCCTCAATTTCAACACCAACAACCCTCCCCTCAAATCCAGCCCCAACAACAACCCTCCCCCCAATTTCAACAGCAATTGCAACCCCAACATTTCCCCCAGCAGCAGCAACAGCAATATCATTTTCAACAACAACAGCAGCAGCAGCGGCTTCTTCAACAGCAGCAGCAACAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAACAGCAACAACAGCAACAGCAGCAACAACAGCAACAGCAGCAACAACAGCAACAACAGCAACAGCAGCAGCAATATCATCAGCACCAATCTCTAGCTTCCCATTTTCATCTACTTCATGTAATGTGTTCAAACCCCCACAACATTTTGAGTGTTCTCTGTGGTACTATATTTTGTGTTTGTTGACATTCTTCGATGTTTTTTGTGTTGTAGCTTGTTGAGAAATTAGCGGATGCAATCGAGAATGGAACTAGAGATCAGCAATCTGATGCATTGGTATCAATTTTGATTGTTTTTAAAATTTTTTCCCTAAGATTAATTATAATCTTGTTTGCTCTGATAATTTGTTCTTGTAACTTTTGGAAGGTTAATGATCTAAATAACCATTTTGAGAAGTGCCAGCAGCTGTTGAACTCAATATCTGGATCACTCAGCTCGAAGGCTATGGTATATTGGAACTCTGTTTTATTTTTCCTGTATGCTAAGGTTCTTGAGTGTTCTTCTTGTGTTTGACATAACCGATTTATCAAATTTGCTGAAGTATAGATGTACAAGTGTTAAACTTTTTCTTTGTTATTGTCTAAATGTTGGTGATGATCGTTTCTAAGACAAGGTTTTAGTAGAGCGTAGTACAATACTCATTGGATATAGAGAGATGAAGTAGCATCTCATTTGTAACCTGTTAACCCTTTACTACAAGTGCAAACCATTAAACCTATGGACTGCTTTTGTGAAGGCTGAGGCTCATCAGGACTTCATGAAATGTCCTATTTCCTTGCGACTTTTGTTTTATTGGTTTGTGGTGAACGATATGTTTTCTTGTGGAAAAAAGAGGTAAGGATAGTGTTTTTTTTTTTTCGGGTTGCAGACAGTAGAGGGACAGAAGAAAAAGCTAGAAGAACATGAGCAGTTATTAAGTCATCGAAGGTATGGTGATACAATACCATTTCTTGCCTCTGGTTCTCTTTGAATTGTCTCATTCATCAATGTGTATATTAATGGTTCTCTATTCAAATAGGGAATTGATTGGGAAATATAAGAACTCTGTTGAAGAGCTTGTCAAGGGGGAGCCCTAGCTATTTTTCTCCCATTCTGCATTAGGTATACTTCTAAATATGGTGCCTATTTCTTTTGTGTATGTCTCAATCGTCGGAACTTTTTGGCTTTCTTTTTTCTTTCTCATTGCCATCATTTTCCTAAAAGCTTTTAACTTCTGTGGCTGGATTTGAAATGTGGTTTTTCGCAAATAAACACTAAAACATAGATGATTGTCCAAATTTTCTGTTGAGCAGCATACGAGATTTTGTGCATTCCCAACATTATACATTCTTATGTTCTGTTGGAAAAGGAGGTCCTCTGTTTATAGTCGCAATCACCTTAGCCCTTATCTGGGGTTTAGGATTGCCCTTCACTTCTCCTCCCTCATTTTGTATCGATGCAAGTATTTTTTTGTCTAAAAGGGGGTTAAAACTCTCCTACTATTAATCATTCAACATTCTCTGTATTGATCAATTATCTATTGCTCTTAGATATCTTAGGTTTTACTTTTAATTGCTGCATATAGTTCTCAGAGGTTTTCCTTGATAAGTCAAACGCTTGTATTTTGTTGGAGTTGACTTCTGGTTTTGAAAATCTCCAATCAATTGAACGCCATGTGTGCTGTTTACACATTTGAATTGAAACTTTCCTATGCCTATACTATACATTTCTTTTCTATTCTTTTTCACAAAATTGTTCTACCCGACTTATCTATTCTACATCATTTCAGGCATGGCTAGAATGTTGCCGTTTTCAAGTGATGCCAAAATTACTTTTCACCGATTCTCGCAACTCCATGGAGAGGGATTCTTATACCTCATCTGCCTGCTCATGCATTTCCTAACCATAATGATGTTGAATGGAACCCTTTCTATACTTCAATGCTATGGGGCACCACTTTTTCTGGAAATTCATTTACCTCTCGTTTAACTTGTACAGTTATTCCAACTTACACTTTTAACCTTTTTTTTTTTTTTTTTTTAACAATATGTTTGAAAAAATTGATCTAACTTCATTTTTTATAATACAAGTACAATACTTGAGTAGAGTGAGAATCTATAGTTGATTATGTGGCTTTTGGTGATATGCACAAATTTTGGC
mRNA sequence
ATGGATTTCCCTGGAGGAGGAAACTGGAGTATGATCCCCAACATCCCTAATCTCACCAATTCCTCCAATCTTTCACAAGAATCCATCTTTCTCCAACAGCAACAATTTTCTCTTCAACATCAGCAGCAGCAGCAGCAGCAGCAAGCATTTCACCACCAACAACAGCAATTTCAGCCCCAAATTCAACCCCAACAGCAATTCCAGCAGCAACAGCTCTCCCCTCAATTTCAACACCAACAACCCTCCCCTCAAATCCAGCCCCAACAACAACCCTCCCCCCAATTTCAACAGCAATTGCAACCCCAACATTTCCCCCAGCAGCAGCAACAGCAATATCATTTTCAACAACAACAGCAGCAGCAGCGGCTTCTTCAACAGCAGCAGCAACAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAACAGCAACAACAGCAACAGCAGCAACAACAGCAACAGCAGCAACAACAGCAACAACAGCAACAGCAGCAGCAATATCATCAGCACCAATCTCTAGCTTCCCATTTTCATCTACTTCATCTTGTTGAGAAATTAGCGGATGCAATCGAGAATGGAACTAGAGATCAGCAATCTGATGCATTGGTTAATGATCTAAATAACCATTTTGAGAAGTGCCAGCAGCTGTTGAACTCAATATCTGGATCACTCAGCTCGAAGGCTATGACAGTAGAGGGACAGAAGAAAAAGCTAGAAGAACATGAGCAGTTATTAAGTCATCGAAGCATACGAGATTTTGTGCATTCCCAACATTATACATTCTTATGTTCTGTTGGAAAAGGAGGTCCTCTGTTTATAGTCGCAATCACCTTAGCCCTTATCTGGGGTTTAGGATTGCCCTTCACTTCTCCTCCCTCATTTTGTATCGATGCAAAGGTTTTCCTTGATAAGTCAAACGCTTGTATTTTGTTGGAGTTGACTTCTGGTTTTGAAAATCTCCAATCAATTGAACGCCATGCATGGCTAGAATGTTGCCGTTTTCAAGTGATGCCAAAATTACTTTTCACCGATTCTCGCAACTCCATGGAGAGGGATTCTTATACCTCATCTGCCTGCTCATGCATTTCCTAACCATAATGATGTTGAATGGAACCCTTTCTATACTTCAATGCTATGGGGCACCACTTTTTCTGGAAATTCATTTACCTCTCGTTTAACTTGTACAGTTATTCCAACTTACACTTTTAACCTTTTTTTTTTTTTTTTTTTAACAATATGTTTGAAAAAATTGATCTAACTTCATTTTTTATAATACAAGTACAATACTTGAGTAGAGTGAGAATCTATAGTTGATTATGTGGCTTTTGGTGATATGCACAAATTTTGGC
Coding sequence (CDS)
ATGGATTTCCCTGGAGGAGGAAACTGGAGTATGATCCCCAACATCCCTAATCTCACCAATTCCTCCAATCTTTCACAAGAATCCATCTTTCTCCAACAGCAACAATTTTCTCTTCAACATCAGCAGCAGCAGCAGCAGCAGCAAGCATTTCACCACCAACAACAGCAATTTCAGCCCCAAATTCAACCCCAACAGCAATTCCAGCAGCAACAGCTCTCCCCTCAATTTCAACACCAACAACCCTCCCCTCAAATCCAGCCCCAACAACAACCCTCCCCCCAATTTCAACAGCAATTGCAACCCCAACATTTCCCCCAGCAGCAGCAACAGCAATATCATTTTCAACAACAACAGCAGCAGCAGCGGCTTCTTCAACAGCAGCAGCAACAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAACAGCAACAACAGCAACAGCAGCAACAACAGCAACAGCAGCAACAACAGCAACAACAGCAACAGCAGCAGCAATATCATCAGCACCAATCTCTAGCTTCCCATTTTCATCTACTTCATCTTGTTGAGAAATTAGCGGATGCAATCGAGAATGGAACTAGAGATCAGCAATCTGATGCATTGGTTAATGATCTAAATAACCATTTTGAGAAGTGCCAGCAGCTGTTGAACTCAATATCTGGATCACTCAGCTCGAAGGCTATGACAGTAGAGGGACAGAAGAAAAAGCTAGAAGAACATGAGCAGTTATTAAGTCATCGAAGCATACGAGATTTTGTGCATTCCCAACATTATACATTCTTATGTTCTGTTGGAAAAGGAGGTCCTCTGTTTATAGTCGCAATCACCTTAGCCCTTATCTGGGGTTTAGGATTGCCCTTCACTTCTCCTCCCTCATTTTGTATCGATGCAAAGGTTTTCCTTGATAAGTCAAACGCTTGTATTTTGTTGGAGTTGACTTCTGGTTTTGAAAATCTCCAATCAATTGAACGCCATGCATGGCTAGAATGTTGCCGTTTTCAAGTGATGCCAAAATTACTTTTCACCGATTCTCGCAACTCCATGGAGAGGGATTCTTATACCTCATCTGCCTGCTCATGCATTTCCTAA
Protein sequence
MDFPGGGNWSMIPNIPNLTNSSNLSQESIFLQQQQFSLQHQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRSIRDFVHSQHYTFLCSVGKGGPLFIVAITLALIWGLGLPFTSPPSFCIDAKVFLDKSNACILLELTSGFENLQSIERHAWLECCRFQVMPKLLFTDSRNSMERDSYTSSACSCIS
Homology
BLAST of MELO3C030574 vs. NCBI nr
Match:
XP_011652352.2 (mediator of RNA polymerase II transcription subunit 9 [Cucumis sativus] >KAE8651289.1 hypothetical protein Csa_002589 [Cucumis sativus])
HSP 1 Score: 307.8 bits (787), Expect = 1.3e-79
Identity = 231/256 (90.23%), Postives = 233/256 (91.02%), Query Frame = 0
Query: 1 MDFPGGGNWSMIPNIPNLTNSSNLSQESIFLQQQQFSLQH-----QQQQQQQQAFHHQQQ 60
MDFPGGGNWSMIPNIPNLTNSSNLSQESIFLQQQQFSLQH QQQQQQQQAFHHQQQ
Sbjct: 1 MDFPGGGNWSMIPNIPNLTNSSNLSQESIFLQQQQFSLQHQQQQQQQQQQQQQAFHHQQQ 60
Query: 61 QFQPQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQ 120
QFQPQIQPQQQFQQQQLSPQFQ QQPSPQIQPQQQPSPQFQQQLQ QHFPQQQQQQ Q
Sbjct: 61 QFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQPSPQFQQQLQTQHFPQQQQQQ---Q 120
Query: 121 QQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQS 180
QQQQQ QQQQQQQ+ QQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQS
Sbjct: 121 QQQQQYHF--------QQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQS 180
Query: 181 LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVE 240
LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKC+QLLNSISGSLSSKAMTVE
Sbjct: 181 LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVE 240
Query: 241 GQKKKLEEHEQLLSHR 252
GQKKKLEEHEQLLSHR
Sbjct: 241 GQKKKLEEHEQLLSHR 245
BLAST of MELO3C030574 vs. NCBI nr
Match:
XP_038903145.1 (mediator of RNA polymerase II transcription subunit 9 [Benincasa hispida])
HSP 1 Score: 294.7 bits (753), Expect = 1.1e-75
Identity = 232/256 (90.62%), Postives = 236/256 (92.19%), Query Frame = 0
Query: 1 MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQ--QQQQQAFHHQQQQF 60
MDF GGGNWSMIPNIPNLTNSSNLS QES+F QQFSLQ QQQ QQQQQ+FHHQQQQF
Sbjct: 1 MDFSGGGNWSMIPNIPNLTNSSNLSNQESLF---QQFSLQQQQQQPQQQQQSFHHQQQQF 60
Query: 61 QPQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQQ 120
QPQIQPQQQFQQQQ SPQFQ QQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQ QQQ
Sbjct: 61 QPQIQPQQQFQQQQPSPQFQQQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQ-----QQQ 120
Query: 121 QQQQRLLQQQQQQQ--QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQS 180
QQQQ QQQQQQ+ QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQS
Sbjct: 121 QQQQYHFQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQS 180
Query: 181 LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVE 240
LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVE
Sbjct: 181 LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVE 240
Query: 241 GQKKKLEEHEQLLSHR 252
GQKKKLEEHEQLL+HR
Sbjct: 241 GQKKKLEEHEQLLNHR 248
BLAST of MELO3C030574 vs. NCBI nr
Match:
XP_023542032.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 273.1 bits (697), Expect = 3.5e-69
Identity = 208/253 (82.21%), Postives = 213/253 (84.19%), Query Frame = 0
Query: 1 MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSL-QHQQQQQQQQAFHHQQQQFQ 60
MDF GGNWSMIPNIPNL+NSSNLS QES++LQQQQFSL Q QQQQQQQQ+FHHQQQQFQ
Sbjct: 1 MDF-SGGNWSMIPNIPNLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQSFHHQQQQFQ 60
Query: 61 PQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQQQ 120
PQIQ QQQFQQQQLSPQFQ QQ SPQIQPQQQPSPQFQQQLQPQHFP
Sbjct: 61 PQIQSQQQFQQQQLSPQFQQQQSSPQIQPQQQPSPQFQQQLQPQHFP------------- 120
Query: 121 QQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLAS 180
QQQQQQQQQQQQQQ QQQQQQQQQQQQQQQQQQQQQYHQHQSLAS
Sbjct: 121 -------------QQQQQQQQQQQQQQYHFQQQQQQQQQQQQQQQQQQQQQYHQHQSLAS 180
Query: 181 HFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQK 240
HFHL HLVEKLAD IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQK
Sbjct: 181 HFHLFHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQK 226
Query: 241 KKLEEHEQLLSHR 252
KKLEEHEQLL+HR
Sbjct: 241 KKLEEHEQLLNHR 226
BLAST of MELO3C030574 vs. NCBI nr
Match:
KAG6574160.1 (Mediator of RNA polymerase II transcription subunit 9, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 272.3 bits (695), Expect = 6.0e-69
Identity = 202/256 (78.91%), Postives = 207/256 (80.86%), Query Frame = 0
Query: 1 MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSL----QHQQQQQQQQAFHHQQQ 60
MDF GGNWSMIPNIPNL+NSSNLS QES++LQQQQFSL Q QQQQQQQQ+FHHQQQ
Sbjct: 1 MDF-SGGNWSMIPNIPNLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQQQQSFHHQQQ 60
Query: 61 QFQPQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQ 120
QFQPQIQ QQQFQQQQLSPQFQ QQPSPQIQPQQQPSPQFQQQLQPQHFP
Sbjct: 61 QFQPQIQSQQQFQQQQLSPQFQQQQPSPQIQPQQQPSPQFQQQLQPQHFP---------- 120
Query: 121 QQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQS 180
QQQQQQQQQQ QQQQQQQQQQQQQQQQQQYHQHQS
Sbjct: 121 -----------------------QQQQQQQQQQYHFQQQQQQQQQQQQQQQQQQYHQHQS 180
Query: 181 LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVE 240
LASHFHL HLVEKLAD IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVE
Sbjct: 181 LASHFHLFHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVE 222
Query: 241 GQKKKLEEHEQLLSHR 252
GQKKKLEEHEQLL+HR
Sbjct: 241 GQKKKLEEHEQLLNHR 222
BLAST of MELO3C030574 vs. NCBI nr
Match:
XP_022944890.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita moschata])
HSP 1 Score: 271.9 bits (694), Expect = 7.8e-69
Identity = 204/255 (80.00%), Postives = 209/255 (81.96%), Query Frame = 0
Query: 1 MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSL---QHQQQQQQQQAFHHQQQQ 60
MDF GGNWSMIPNIPNL+NSSNLS QES++LQQQQFSL Q QQQQQQQQ+FHHQQQQ
Sbjct: 1 MDF-SGGNWSMIPNIPNLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQQQSFHHQQQQ 60
Query: 61 FQPQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQ 120
FQPQIQ QQQFQQQQLSPQFQ QQPSPQ QPQQQPSPQFQQQLQPQHFP
Sbjct: 61 FQPQIQSQQQFQQQQLSPQFQQQQPSPQTQPQQQPSPQFQQQLQPQHFP----------- 120
Query: 121 QQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSL 180
QQQQQQQQQQQQ QQQQQQQQQQQQQQQQQQQYHQHQSL
Sbjct: 121 -------------------QQQQQQQQQQQQYHFQQQQQQQQQQQQQQQQQQQYHQHQSL 180
Query: 181 ASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEG 240
ASHFHL HLVEKLAD IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEG
Sbjct: 181 ASHFHLFHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEG 224
Query: 241 QKKKLEEHEQLLSHR 252
QKKKLEEHEQLL+HR
Sbjct: 241 QKKKLEEHEQLLNHR 224
BLAST of MELO3C030574 vs. ExPASy Swiss-Prot
Match:
Q8RWA2 (Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX=3702 GN=MED9 PE=1 SV=1)
HSP 1 Score: 91.7 bits (226), Expect = 1.9e-17
Identity = 144/256 (56.25%), Postives = 157/256 (61.33%), Query Frame = 0
Query: 5 GGGNWSMIPNIP---NLTNSSNLSQESIFLQQQQFSLQHQQQQQQQQAFHHQQQQFQPQI 64
GGGNWSMIPN+ N +N Q+ +FLQQQQ LQ QQQQQQQQ FH QQQQ
Sbjct: 7 GGGNWSMIPNVQAQGNFGTPTNHDQQ-LFLQQQQ--LQQQQQQQQQQQFHLQQQQ----- 66
Query: 65 QPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQQQQQQ 124
Q Q QQQQ PQ QQQ Q+QQ Q QHF QQ QQ QQQQ
Sbjct: 67 --QTQQQQQQFQPQ------------QQQEMQQYQQFQQQQHFIQQ-------QQFQQQQ 126
Query: 125 RLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFH 184
RLLQ Q Q Q QQ Q QQQQQ Q Q Q QHQSLASHFH
Sbjct: 127 RLLQSPPLQPQSLQSPPPQQTMVHTPQSMMHTPQQQQQLVQTPVQTPQ--QHQSLASHFH 186
Query: 185 LLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKL 244
L +VEKLAD IENGTRDQ SDALVN+LN+HF+KCQQLLNSISGSL SK MTV+GQK+ +
Sbjct: 187 LYPMVEKLADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSKTMTVDGQKRNV 229
Query: 245 EEHEQLLSHRSIRDFV 258
EE EQLL R RD +
Sbjct: 247 EESEQLLQQR--RDLI 229
BLAST of MELO3C030574 vs. ExPASy TrEMBL
Match:
A0A6J1FZC2 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111449284 PE=4 SV=1)
HSP 1 Score: 271.9 bits (694), Expect = 3.8e-69
Identity = 204/255 (80.00%), Postives = 209/255 (81.96%), Query Frame = 0
Query: 1 MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSL---QHQQQQQQQQAFHHQQQQ 60
MDF GGNWSMIPNIPNL+NSSNLS QES++LQQQQFSL Q QQQQQQQQ+FHHQQQQ
Sbjct: 1 MDF-SGGNWSMIPNIPNLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQQQSFHHQQQQ 60
Query: 61 FQPQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQ 120
FQPQIQ QQQFQQQQLSPQFQ QQPSPQ QPQQQPSPQFQQQLQPQHFP
Sbjct: 61 FQPQIQSQQQFQQQQLSPQFQQQQPSPQTQPQQQPSPQFQQQLQPQHFP----------- 120
Query: 121 QQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSL 180
QQQQQQQQQQQQ QQQQQQQQQQQQQQQQQQQYHQHQSL
Sbjct: 121 -------------------QQQQQQQQQQQQYHFQQQQQQQQQQQQQQQQQQQYHQHQSL 180
Query: 181 ASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEG 240
ASHFHL HLVEKLAD IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEG
Sbjct: 181 ASHFHLFHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEG 224
Query: 241 QKKKLEEHEQLLSHR 252
QKKKLEEHEQLL+HR
Sbjct: 241 QKKKLEEHEQLLNHR 224
BLAST of MELO3C030574 vs. ExPASy TrEMBL
Match:
A0A6J1GCY0 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111452828 PE=4 SV=1)
HSP 1 Score: 259.2 bits (661), Expect = 2.5e-65
Identity = 201/275 (73.09%), Postives = 216/275 (78.55%), Query Frame = 0
Query: 1 MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQ-AFHHQQQQFQ 60
MDF GGGNWSMIPNIP L+NSSNLS QES++LQQQQFSLQ QQQQQQQQ +FHHQ QQFQ
Sbjct: 1 MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQ 60
Query: 61 PQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQQQ 120
PQIQPQQQFQQQQ SPQFQ QPSPQIQPQQQ S QFQQQ+QPQHFP
Sbjct: 61 PQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFP------------- 120
Query: 121 QQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLAS 180
QQQQQQQQQQQQ QQQQQ+ QQQQQQQ+QQQYHQHQSLAS
Sbjct: 121 -----------------QQQQQQQQQQQQYHFQQQQQRLLQQQQQQQKQQQYHQHQSLAS 180
Query: 181 HFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQK 240
HFHL HLVEKLADAIE G RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQK
Sbjct: 181 HFHLFHLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQK 240
Query: 241 KKLEEHEQLLSHRSIRDFVHSQHYTFLCSVGKGGP 274
KKLEEHEQLLS+R R+ + ++ + + +GKG P
Sbjct: 241 KKLEEHEQLLSYR--RELI-GKYKSSVEELGKGEP 242
BLAST of MELO3C030574 vs. ExPASy TrEMBL
Match:
A0A6J1K651 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC111492669 PE=4 SV=1)
HSP 1 Score: 255.0 bits (650), Expect = 4.8e-64
Identity = 194/255 (76.08%), Postives = 202/255 (79.22%), Query Frame = 0
Query: 1 MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQ---AFHHQQQQ 60
MDF GGGNWSMIPNIP L+NSSNLS QES++LQQQQFSLQ QQQQQQQQ +FHHQ QQ
Sbjct: 1 MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQQLSFHHQPQQ 60
Query: 61 FQPQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQ 120
FQPQIQPQQQFQQQQ SPQFQ QPSPQIQPQQQ S QFQQQ+QPQHFP
Sbjct: 61 FQPQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFP----------- 120
Query: 121 QQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSL 180
QQQQQQQQQQ QQQQQ+ QQQQQQQ+QQQYHQHQSL
Sbjct: 121 ---------------------QQQQQQQQQQYHFQQQQQRLLQQQQQQQKQQQYHQHQSL 180
Query: 181 ASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEG 240
ASHFHL HLVEKLADAIE G RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEG
Sbjct: 181 ASHFHLFHLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEG 223
Query: 241 QKKKLEEHEQLLSHR 252
QKKKLEEHEQLLS+R
Sbjct: 241 QKKKLEEHEQLLSYR 223
BLAST of MELO3C030574 vs. ExPASy TrEMBL
Match:
A0A6J1D301 (Mediator of RNA polymerase II transcription subunit 9 OS=Momordica charantia OX=3673 GN=LOC111016860 PE=3 SV=1)
HSP 1 Score: 254.2 bits (648), Expect = 8.2e-64
Identity = 198/252 (78.57%), Postives = 206/252 (81.75%), Query Frame = 0
Query: 1 MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQAFHHQQQQFQP 60
MDF GGGNWSMIPNIP L+NSSNLS QES++LQQQQFSL QQQQ FHHQQQQFQP
Sbjct: 1 MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSL------QQQQPFHHQQQQFQP 60
Query: 61 QIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQQQQ 120
Q+QP QQFQQQQ SPQFQ QQPSPQIQP QQPSPQFQQQLQPQHFP
Sbjct: 61 QLQP-QQFQQQQPSPQFQQQQPSPQIQP-QQPSPQFQQQLQPQHFP-------------- 120
Query: 121 QQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASH 180
QQQQQQQQ QQQQQQQQQ+ QQQQQQQQQQQQQQQQYHQHQSLASH
Sbjct: 121 -----------QQQQQQQQYHFQQQQQQQQQRLLQQQQQQQQQQQQQQQQYHQHQSLASH 180
Query: 181 FHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKK 240
FHL HLVEKLADAIENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTV+GQKK
Sbjct: 181 FHLFHLVEKLADAIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVDGQKK 219
Query: 241 KLEEHEQLLSHR 252
KLEEH+QLL+HR
Sbjct: 241 KLEEHKQLLNHR 219
BLAST of MELO3C030574 vs. ExPASy TrEMBL
Match:
A0A6J1HX54 (Mediator of RNA polymerase II transcription subunit 9 OS=Cucurbita maxima OX=3661 GN=LOC111467667 PE=3 SV=1)
HSP 1 Score: 247.3 bits (630), Expect = 1.0e-61
Identity = 181/261 (69.35%), Postives = 186/261 (71.26%), Query Frame = 0
Query: 1 MDFPGGGNWSMIPNIPNLTNSSNLS----------QESIFLQQQQFSLQHQQQQQQQQAF 60
MDF GGNWSMIPNIPNL+NSSNLS QES++LQQQQFSLQ QQQQQQQQ+F
Sbjct: 1 MDF-SGGNWSMIPNIPNLSNSSNLSNHSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQSF 60
Query: 61 HHQQQQFQPQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQ 120
H QQQQFQPQIQ QQQFQQQQLSPQFQ QQQPSPQFQQQLQPQHFP
Sbjct: 61 HQQQQQFQPQIQSQQQFQQQQLSPQFQ----------QQQPSPQFQQQLQPQHFP----- 120
Query: 121 QYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQY 180
QQQQQQQQQ QQQQQQQQY
Sbjct: 121 ---------------------------------------QQQQQQQQQYHFQQQQQQQQY 180
Query: 181 HQHQSLASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSK 240
HQHQSLASHFHL HLVEKLAD IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSK
Sbjct: 181 HQHQSLASHFHLFHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSK 206
Query: 241 AMTVEGQKKKLEEHEQLLSHR 252
AMTVEGQKKKLEEHEQLL+HR
Sbjct: 241 AMTVEGQKKKLEEHEQLLNHR 206
BLAST of MELO3C030574 vs. TAIR 10
Match:
AT1G55080.1 (MED9; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29580.1); Has 67203 Blast hits to 25757 proteins in 1293 species: Archae - 12; Bacteria - 4374; Metazoa - 24340; Fungi - 7940; Plants - 5927; Viruses - 273; Other Eukaryotes - 24337 (source: NCBI BLink). )
HSP 1 Score: 91.7 bits (226), Expect = 1.4e-18
Identity = 144/256 (56.25%), Postives = 157/256 (61.33%), Query Frame = 0
Query: 5 GGGNWSMIPNIP---NLTNSSNLSQESIFLQQQQFSLQHQQQQQQQQAFHHQQQQFQPQI 64
GGGNWSMIPN+ N +N Q+ +FLQQQQ LQ QQQQQQQQ FH QQQQ
Sbjct: 7 GGGNWSMIPNVQAQGNFGTPTNHDQQ-LFLQQQQ--LQQQQQQQQQQQFHLQQQQ----- 66
Query: 65 QPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQQQQQQ 124
Q Q QQQQ PQ QQQ Q+QQ Q QHF QQ QQ QQQQ
Sbjct: 67 --QTQQQQQQFQPQ------------QQQEMQQYQQFQQQQHFIQQ-------QQFQQQQ 126
Query: 125 RLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFH 184
RLLQ Q Q Q QQ Q QQQQQ Q Q Q QHQSLASHFH
Sbjct: 127 RLLQSPPLQPQSLQSPPPQQTMVHTPQSMMHTPQQQQQLVQTPVQTPQ--QHQSLASHFH 186
Query: 185 LLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKL 244
L +VEKLAD IENGTRDQ SDALVN+LN+HF+KCQQLLNSISGSL SK MTV+GQK+ +
Sbjct: 187 LYPMVEKLADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSKTMTVDGQKRNV 229
Query: 245 EEHEQLLSHRSIRDFV 258
EE EQLL R RD +
Sbjct: 247 EESEQLLQQR--RDLI 229
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_011652352.2 | 1.3e-79 | 90.23 | mediator of RNA polymerase II transcription subunit 9 [Cucumis sativus] >KAE8651... | [more] |
XP_038903145.1 | 1.1e-75 | 90.63 | mediator of RNA polymerase II transcription subunit 9 [Benincasa hispida] | [more] |
XP_023542032.1 | 3.5e-69 | 82.21 | mediator of RNA polymerase II transcription subunit 9-like [Cucurbita pepo subsp... | [more] |
KAG6574160.1 | 6.0e-69 | 78.91 | Mediator of RNA polymerase II transcription subunit 9, partial [Cucurbita argyro... | [more] |
XP_022944890.1 | 7.8e-69 | 80.00 | mediator of RNA polymerase II transcription subunit 9-like [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
Q8RWA2 | 1.9e-17 | 56.25 | Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1FZC2 | 3.8e-69 | 80.00 | mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata... | [more] |
A0A6J1GCY0 | 2.5e-65 | 73.09 | mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata... | [more] |
A0A6J1K651 | 4.8e-64 | 76.08 | mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita maxima O... | [more] |
A0A6J1D301 | 8.2e-64 | 78.57 | Mediator of RNA polymerase II transcription subunit 9 OS=Momordica charantia OX=... | [more] |
A0A6J1HX54 | 1.0e-61 | 69.35 | Mediator of RNA polymerase II transcription subunit 9 OS=Cucurbita maxima OX=366... | [more] |
Match Name | E-value | Identity | Description | |
AT1G55080.1 | 1.4e-18 | 56.25 | MED9; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G2958... | [more] |