MELO3C030574 (gene) Melon (DHL92) v4

Overview
NameMELO3C030574
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptionmediator of RNA polymerase II transcription subunit 9-like
Locationchr04: 16642180 .. 16644750 (-)
RNA-Seq ExpressionMELO3C030574
SyntenyMELO3C030574
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTCCCTGGAGGAGGAAACTGGAGTATGATCCCCAACATCCCTAATCTCACCAATTCCTCCAATCTTTCACAAGAATCCATCTTTCTCCAACAGCAACAATTTTCTCTTCAACATCAGCAGCAGCAGCAGCAGCAGCAAGCATTTCACCACCAACAACAGCAATTTCAGCCCCAAATTCAACCCCAACAGCAATTCCAGCAGCAACAGCTCTCCCCTCAATTTCAACACCAACAACCCTCCCCTCAAATCCAGCCCCAACAACAACCCTCCCCCCAATTTCAACAGCAATTGCAACCCCAACATTTCCCCCAGCAGCAGCAACAGCAATATCATTTTCAACAACAACAGCAGCAGCAGCGGCTTCTTCAACAGCAGCAGCAACAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAACAGCAACAACAGCAACAGCAGCAACAACAGCAACAGCAGCAACAACAGCAACAACAGCAACAGCAGCAGCAATATCATCAGCACCAATCTCTAGCTTCCCATTTTCATCTACTTCATGTAATGTGTTCAAACCCCCACAACATTTTGAGTGTTCTCTGTGGTACTATATTTTGTGTTTGTTGACATTCTTCGATGTTTTTTGTGTTGTAGCTTGTTGAGAAATTAGCGGATGCAATCGAGAATGGAACTAGAGATCAGCAATCTGATGCATTGGTATCAATTTTGATTGTTTTTAAAATTTTTTCCCTAAGATTAATTATAATCTTGTTTGCTCTGATAATTTGTTCTTGTAACTTTTGGAAGGTTAATGATCTAAATAACCATTTTGAGAAGTGCCAGCAGCTGTTGAACTCAATATCTGGATCACTCAGCTCGAAGGCTATGGTATATTGGAACTCTGTTTTATTTTTCCTGTATGCTAAGGTTCTTGAGTGTTCTTCTTGTGTTTGACATAACCGATTTATCAAATTTGCTGAAGTATAGATGTACAAGTGTTAAACTTTTTCTTTGTTATTGTCTAAATGTTGGTGATGATCGTTTCTAAGACAAGGTTTTAGTAGAGCGTAGTACAATACTCATTGGATATAGAGAGATGAAGTAGCATCTCATTTGTAACCTGTTAACCCTTTACTACAAGTGCAAACCATTAAACCTATGGACTGCTTTTGTGAAGGCTGAGGCTCATCAGGACTTCATGAAATGTCCTATTTCCTTGCGACTTTTGTTTTATTGGTTTGTGGTGAACGATATGTTTTCTTGTGGAAAAAAGAGGTAAGGATAGTGTTTTTTTTTTTTCGGGTTGCAGACAGTAGAGGGACAGAAGAAAAAGCTAGAAGAACATGAGCAGTTATTAAGTCATCGAAGGTATGGTGATACAATACCATTTCTTGCCTCTGGTTCTCTTTGAATTGTCTCATTCATCAATGTGTATATTAATGGTTCTCTATTCAAATAGGGAATTGATTGGGAAATATAAGAACTCTGTTGAAGAGCTTGTCAAGGGGGAGCCCTAGCTATTTTTCTCCCATTCTGCATTAGGTATACTTCTAAATATGGTGCCTATTTCTTTTGTGTATGTCTCAATCGTCGGAACTTTTTGGCTTTCTTTTTTCTTTCTCATTGCCATCATTTTCCTAAAAGCTTTTAACTTCTGTGGCTGGATTTGAAATGTGGTTTTTCGCAAATAAACACTAAAACATAGATGATTGTCCAAATTTTCTGTTGAGCAGCATACGAGATTTTGTGCATTCCCAACATTATACATTCTTATGTTCTGTTGGAAAAGGAGGTCCTCTGTTTATAGTCGCAATCACCTTAGCCCTTATCTGGGGTTTAGGATTGCCCTTCACTTCTCCTCCCTCATTTTGTATCGATGCAAGTATTTTTTTGTCTAAAAGGGGGTTAAAACTCTCCTACTATTAATCATTCAACATTCTCTGTATTGATCAATTATCTATTGCTCTTAGATATCTTAGGTTTTACTTTTAATTGCTGCATATAGTTCTCAGAGGTTTTCCTTGATAAGTCAAACGCTTGTATTTTGTTGGAGTTGACTTCTGGTTTTGAAAATCTCCAATCAATTGAACGCCATGTGTGCTGTTTACACATTTGAATTGAAACTTTCCTATGCCTATACTATACATTTCTTTTCTATTCTTTTTCACAAAATTGTTCTACCCGACTTATCTATTCTACATCATTTCAGGCATGGCTAGAATGTTGCCGTTTTCAAGTGATGCCAAAATTACTTTTCACCGATTCTCGCAACTCCATGGAGAGGGATTCTTATACCTCATCTGCCTGCTCATGCATTTCCTAACCATAATGATGTTGAATGGAACCCTTTCTATACTTCAATGCTATGGGGCACCACTTTTTCTGGAAATTCATTTACCTCTCGTTTAACTTGTACAGTTATTCCAACTTACACTTTTAACCTTTTTTTTTTTTTTTTTTTAACAATATGTTTGAAAAAATTGATCTAACTTCATTTTTTATAATACAAGTACAATACTTGAGTAGAGTGAGAATCTATAGTTGATTATGTGGCTTTTGGTGATATGCACAAATTTTGGC

mRNA sequence

ATGGATTTCCCTGGAGGAGGAAACTGGAGTATGATCCCCAACATCCCTAATCTCACCAATTCCTCCAATCTTTCACAAGAATCCATCTTTCTCCAACAGCAACAATTTTCTCTTCAACATCAGCAGCAGCAGCAGCAGCAGCAAGCATTTCACCACCAACAACAGCAATTTCAGCCCCAAATTCAACCCCAACAGCAATTCCAGCAGCAACAGCTCTCCCCTCAATTTCAACACCAACAACCCTCCCCTCAAATCCAGCCCCAACAACAACCCTCCCCCCAATTTCAACAGCAATTGCAACCCCAACATTTCCCCCAGCAGCAGCAACAGCAATATCATTTTCAACAACAACAGCAGCAGCAGCGGCTTCTTCAACAGCAGCAGCAACAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAACAGCAACAACAGCAACAGCAGCAACAACAGCAACAGCAGCAACAACAGCAACAACAGCAACAGCAGCAGCAATATCATCAGCACCAATCTCTAGCTTCCCATTTTCATCTACTTCATCTTGTTGAGAAATTAGCGGATGCAATCGAGAATGGAACTAGAGATCAGCAATCTGATGCATTGGTTAATGATCTAAATAACCATTTTGAGAAGTGCCAGCAGCTGTTGAACTCAATATCTGGATCACTCAGCTCGAAGGCTATGACAGTAGAGGGACAGAAGAAAAAGCTAGAAGAACATGAGCAGTTATTAAGTCATCGAAGCATACGAGATTTTGTGCATTCCCAACATTATACATTCTTATGTTCTGTTGGAAAAGGAGGTCCTCTGTTTATAGTCGCAATCACCTTAGCCCTTATCTGGGGTTTAGGATTGCCCTTCACTTCTCCTCCCTCATTTTGTATCGATGCAAAGGTTTTCCTTGATAAGTCAAACGCTTGTATTTTGTTGGAGTTGACTTCTGGTTTTGAAAATCTCCAATCAATTGAACGCCATGCATGGCTAGAATGTTGCCGTTTTCAAGTGATGCCAAAATTACTTTTCACCGATTCTCGCAACTCCATGGAGAGGGATTCTTATACCTCATCTGCCTGCTCATGCATTTCCTAACCATAATGATGTTGAATGGAACCCTTTCTATACTTCAATGCTATGGGGCACCACTTTTTCTGGAAATTCATTTACCTCTCGTTTAACTTGTACAGTTATTCCAACTTACACTTTTAACCTTTTTTTTTTTTTTTTTTTAACAATATGTTTGAAAAAATTGATCTAACTTCATTTTTTATAATACAAGTACAATACTTGAGTAGAGTGAGAATCTATAGTTGATTATGTGGCTTTTGGTGATATGCACAAATTTTGGC

Coding sequence (CDS)

ATGGATTTCCCTGGAGGAGGAAACTGGAGTATGATCCCCAACATCCCTAATCTCACCAATTCCTCCAATCTTTCACAAGAATCCATCTTTCTCCAACAGCAACAATTTTCTCTTCAACATCAGCAGCAGCAGCAGCAGCAGCAAGCATTTCACCACCAACAACAGCAATTTCAGCCCCAAATTCAACCCCAACAGCAATTCCAGCAGCAACAGCTCTCCCCTCAATTTCAACACCAACAACCCTCCCCTCAAATCCAGCCCCAACAACAACCCTCCCCCCAATTTCAACAGCAATTGCAACCCCAACATTTCCCCCAGCAGCAGCAACAGCAATATCATTTTCAACAACAACAGCAGCAGCAGCGGCTTCTTCAACAGCAGCAGCAACAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAACAGCAACAACAGCAACAGCAGCAACAACAGCAACAGCAGCAACAACAGCAACAACAGCAACAGCAGCAGCAATATCATCAGCACCAATCTCTAGCTTCCCATTTTCATCTACTTCATCTTGTTGAGAAATTAGCGGATGCAATCGAGAATGGAACTAGAGATCAGCAATCTGATGCATTGGTTAATGATCTAAATAACCATTTTGAGAAGTGCCAGCAGCTGTTGAACTCAATATCTGGATCACTCAGCTCGAAGGCTATGACAGTAGAGGGACAGAAGAAAAAGCTAGAAGAACATGAGCAGTTATTAAGTCATCGAAGCATACGAGATTTTGTGCATTCCCAACATTATACATTCTTATGTTCTGTTGGAAAAGGAGGTCCTCTGTTTATAGTCGCAATCACCTTAGCCCTTATCTGGGGTTTAGGATTGCCCTTCACTTCTCCTCCCTCATTTTGTATCGATGCAAAGGTTTTCCTTGATAAGTCAAACGCTTGTATTTTGTTGGAGTTGACTTCTGGTTTTGAAAATCTCCAATCAATTGAACGCCATGCATGGCTAGAATGTTGCCGTTTTCAAGTGATGCCAAAATTACTTTTCACCGATTCTCGCAACTCCATGGAGAGGGATTCTTATACCTCATCTGCCTGCTCATGCATTTCCTAA

Protein sequence

MDFPGGGNWSMIPNIPNLTNSSNLSQESIFLQQQQFSLQHQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRSIRDFVHSQHYTFLCSVGKGGPLFIVAITLALIWGLGLPFTSPPSFCIDAKVFLDKSNACILLELTSGFENLQSIERHAWLECCRFQVMPKLLFTDSRNSMERDSYTSSACSCIS
Homology
BLAST of MELO3C030574 vs. NCBI nr
Match: XP_011652352.2 (mediator of RNA polymerase II transcription subunit 9 [Cucumis sativus] >KAE8651289.1 hypothetical protein Csa_002589 [Cucumis sativus])

HSP 1 Score: 307.8 bits (787), Expect = 1.3e-79
Identity = 231/256 (90.23%), Postives = 233/256 (91.02%), Query Frame = 0

Query: 1   MDFPGGGNWSMIPNIPNLTNSSNLSQESIFLQQQQFSLQH-----QQQQQQQQAFHHQQQ 60
           MDFPGGGNWSMIPNIPNLTNSSNLSQESIFLQQQQFSLQH     QQQQQQQQAFHHQQQ
Sbjct: 1   MDFPGGGNWSMIPNIPNLTNSSNLSQESIFLQQQQFSLQHQQQQQQQQQQQQQAFHHQQQ 60

Query: 61  QFQPQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQ 120
           QFQPQIQPQQQFQQQQLSPQFQ QQPSPQIQPQQQPSPQFQQQLQ QHFPQQQQQQ   Q
Sbjct: 61  QFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQPSPQFQQQLQTQHFPQQQQQQ---Q 120

Query: 121 QQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQS 180
           QQQQQ           QQQQQQQ+  QQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQS
Sbjct: 121 QQQQQYHF--------QQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQS 180

Query: 181 LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVE 240
           LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKC+QLLNSISGSLSSKAMTVE
Sbjct: 181 LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVE 240

Query: 241 GQKKKLEEHEQLLSHR 252
           GQKKKLEEHEQLLSHR
Sbjct: 241 GQKKKLEEHEQLLSHR 245

BLAST of MELO3C030574 vs. NCBI nr
Match: XP_038903145.1 (mediator of RNA polymerase II transcription subunit 9 [Benincasa hispida])

HSP 1 Score: 294.7 bits (753), Expect = 1.1e-75
Identity = 232/256 (90.62%), Postives = 236/256 (92.19%), Query Frame = 0

Query: 1   MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQ--QQQQQAFHHQQQQF 60
           MDF GGGNWSMIPNIPNLTNSSNLS QES+F   QQFSLQ QQQ  QQQQQ+FHHQQQQF
Sbjct: 1   MDFSGGGNWSMIPNIPNLTNSSNLSNQESLF---QQFSLQQQQQQPQQQQQSFHHQQQQF 60

Query: 61  QPQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQQ 120
           QPQIQPQQQFQQQQ SPQFQ QQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQ     QQQ
Sbjct: 61  QPQIQPQQQFQQQQPSPQFQQQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQ-----QQQ 120

Query: 121 QQQQRLLQQQQQQQ--QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQS 180
           QQQQ   QQQQQQ+  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQS
Sbjct: 121 QQQQYHFQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQS 180

Query: 181 LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVE 240
           LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVE
Sbjct: 181 LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVE 240

Query: 241 GQKKKLEEHEQLLSHR 252
           GQKKKLEEHEQLL+HR
Sbjct: 241 GQKKKLEEHEQLLNHR 248

BLAST of MELO3C030574 vs. NCBI nr
Match: XP_023542032.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.1 bits (697), Expect = 3.5e-69
Identity = 208/253 (82.21%), Postives = 213/253 (84.19%), Query Frame = 0

Query: 1   MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSL-QHQQQQQQQQAFHHQQQQFQ 60
           MDF  GGNWSMIPNIPNL+NSSNLS QES++LQQQQFSL Q QQQQQQQQ+FHHQQQQFQ
Sbjct: 1   MDF-SGGNWSMIPNIPNLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQSFHHQQQQFQ 60

Query: 61  PQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQQQ 120
           PQIQ QQQFQQQQLSPQFQ QQ SPQIQPQQQPSPQFQQQLQPQHFP             
Sbjct: 61  PQIQSQQQFQQQQLSPQFQQQQSSPQIQPQQQPSPQFQQQLQPQHFP------------- 120

Query: 121 QQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLAS 180
                        QQQQQQQQQQQQQQ   QQQQQQQQQQQQQQQQQQQQQYHQHQSLAS
Sbjct: 121 -------------QQQQQQQQQQQQQQYHFQQQQQQQQQQQQQQQQQQQQQYHQHQSLAS 180

Query: 181 HFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQK 240
           HFHL HLVEKLAD IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQK
Sbjct: 181 HFHLFHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQK 226

Query: 241 KKLEEHEQLLSHR 252
           KKLEEHEQLL+HR
Sbjct: 241 KKLEEHEQLLNHR 226

BLAST of MELO3C030574 vs. NCBI nr
Match: KAG6574160.1 (Mediator of RNA polymerase II transcription subunit 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 272.3 bits (695), Expect = 6.0e-69
Identity = 202/256 (78.91%), Postives = 207/256 (80.86%), Query Frame = 0

Query: 1   MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSL----QHQQQQQQQQAFHHQQQ 60
           MDF  GGNWSMIPNIPNL+NSSNLS QES++LQQQQFSL    Q QQQQQQQQ+FHHQQQ
Sbjct: 1   MDF-SGGNWSMIPNIPNLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQQQQSFHHQQQ 60

Query: 61  QFQPQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQ 120
           QFQPQIQ QQQFQQQQLSPQFQ QQPSPQIQPQQQPSPQFQQQLQPQHFP          
Sbjct: 61  QFQPQIQSQQQFQQQQLSPQFQQQQPSPQIQPQQQPSPQFQQQLQPQHFP---------- 120

Query: 121 QQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQS 180
                                  QQQQQQQQQQ   QQQQQQQQQQQQQQQQQQYHQHQS
Sbjct: 121 -----------------------QQQQQQQQQQYHFQQQQQQQQQQQQQQQQQQYHQHQS 180

Query: 181 LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVE 240
           LASHFHL HLVEKLAD IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVE
Sbjct: 181 LASHFHLFHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVE 222

Query: 241 GQKKKLEEHEQLLSHR 252
           GQKKKLEEHEQLL+HR
Sbjct: 241 GQKKKLEEHEQLLNHR 222

BLAST of MELO3C030574 vs. NCBI nr
Match: XP_022944890.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita moschata])

HSP 1 Score: 271.9 bits (694), Expect = 7.8e-69
Identity = 204/255 (80.00%), Postives = 209/255 (81.96%), Query Frame = 0

Query: 1   MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSL---QHQQQQQQQQAFHHQQQQ 60
           MDF  GGNWSMIPNIPNL+NSSNLS QES++LQQQQFSL   Q QQQQQQQQ+FHHQQQQ
Sbjct: 1   MDF-SGGNWSMIPNIPNLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQQQSFHHQQQQ 60

Query: 61  FQPQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQ 120
           FQPQIQ QQQFQQQQLSPQFQ QQPSPQ QPQQQPSPQFQQQLQPQHFP           
Sbjct: 61  FQPQIQSQQQFQQQQLSPQFQQQQPSPQTQPQQQPSPQFQQQLQPQHFP----------- 120

Query: 121 QQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSL 180
                              QQQQQQQQQQQQ   QQQQQQQQQQQQQQQQQQQYHQHQSL
Sbjct: 121 -------------------QQQQQQQQQQQQYHFQQQQQQQQQQQQQQQQQQQYHQHQSL 180

Query: 181 ASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEG 240
           ASHFHL HLVEKLAD IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEG
Sbjct: 181 ASHFHLFHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEG 224

Query: 241 QKKKLEEHEQLLSHR 252
           QKKKLEEHEQLL+HR
Sbjct: 241 QKKKLEEHEQLLNHR 224

BLAST of MELO3C030574 vs. ExPASy Swiss-Prot
Match: Q8RWA2 (Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX=3702 GN=MED9 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-17
Identity = 144/256 (56.25%), Postives = 157/256 (61.33%), Query Frame = 0

Query: 5   GGGNWSMIPNIP---NLTNSSNLSQESIFLQQQQFSLQHQQQQQQQQAFHHQQQQFQPQI 64
           GGGNWSMIPN+    N    +N  Q+ +FLQQQQ  LQ QQQQQQQQ FH QQQQ     
Sbjct: 7   GGGNWSMIPNVQAQGNFGTPTNHDQQ-LFLQQQQ--LQQQQQQQQQQQFHLQQQQ----- 66

Query: 65  QPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQQQQQQ 124
             Q Q QQQQ  PQ            QQQ   Q+QQ  Q QHF QQ       QQ QQQQ
Sbjct: 67  --QTQQQQQQFQPQ------------QQQEMQQYQQFQQQQHFIQQ-------QQFQQQQ 126

Query: 125 RLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFH 184
           RLLQ    Q Q  Q    QQ      Q      QQQQQ  Q   Q  Q  QHQSLASHFH
Sbjct: 127 RLLQSPPLQPQSLQSPPPQQTMVHTPQSMMHTPQQQQQLVQTPVQTPQ--QHQSLASHFH 186

Query: 185 LLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKL 244
           L  +VEKLAD IENGTRDQ SDALVN+LN+HF+KCQQLLNSISGSL SK MTV+GQK+ +
Sbjct: 187 LYPMVEKLADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSKTMTVDGQKRNV 229

Query: 245 EEHEQLLSHRSIRDFV 258
           EE EQLL  R  RD +
Sbjct: 247 EESEQLLQQR--RDLI 229

BLAST of MELO3C030574 vs. ExPASy TrEMBL
Match: A0A6J1FZC2 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111449284 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 3.8e-69
Identity = 204/255 (80.00%), Postives = 209/255 (81.96%), Query Frame = 0

Query: 1   MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSL---QHQQQQQQQQAFHHQQQQ 60
           MDF  GGNWSMIPNIPNL+NSSNLS QES++LQQQQFSL   Q QQQQQQQQ+FHHQQQQ
Sbjct: 1   MDF-SGGNWSMIPNIPNLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQQQSFHHQQQQ 60

Query: 61  FQPQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQ 120
           FQPQIQ QQQFQQQQLSPQFQ QQPSPQ QPQQQPSPQFQQQLQPQHFP           
Sbjct: 61  FQPQIQSQQQFQQQQLSPQFQQQQPSPQTQPQQQPSPQFQQQLQPQHFP----------- 120

Query: 121 QQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSL 180
                              QQQQQQQQQQQQ   QQQQQQQQQQQQQQQQQQQYHQHQSL
Sbjct: 121 -------------------QQQQQQQQQQQQYHFQQQQQQQQQQQQQQQQQQQYHQHQSL 180

Query: 181 ASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEG 240
           ASHFHL HLVEKLAD IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEG
Sbjct: 181 ASHFHLFHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEG 224

Query: 241 QKKKLEEHEQLLSHR 252
           QKKKLEEHEQLL+HR
Sbjct: 241 QKKKLEEHEQLLNHR 224

BLAST of MELO3C030574 vs. ExPASy TrEMBL
Match: A0A6J1GCY0 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111452828 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.5e-65
Identity = 201/275 (73.09%), Postives = 216/275 (78.55%), Query Frame = 0

Query: 1   MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQ-AFHHQQQQFQ 60
           MDF GGGNWSMIPNIP L+NSSNLS QES++LQQQQFSLQ QQQQQQQQ +FHHQ QQFQ
Sbjct: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQ 60

Query: 61  PQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQQQ 120
           PQIQPQQQFQQQQ SPQFQ  QPSPQIQPQQQ S QFQQQ+QPQHFP             
Sbjct: 61  PQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFP------------- 120

Query: 121 QQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLAS 180
                            QQQQQQQQQQQQ   QQQQQ+  QQQQQQQ+QQQYHQHQSLAS
Sbjct: 121 -----------------QQQQQQQQQQQQYHFQQQQQRLLQQQQQQQKQQQYHQHQSLAS 180

Query: 181 HFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQK 240
           HFHL HLVEKLADAIE G RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQK
Sbjct: 181 HFHLFHLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQK 240

Query: 241 KKLEEHEQLLSHRSIRDFVHSQHYTFLCSVGKGGP 274
           KKLEEHEQLLS+R  R+ +  ++ + +  +GKG P
Sbjct: 241 KKLEEHEQLLSYR--RELI-GKYKSSVEELGKGEP 242

BLAST of MELO3C030574 vs. ExPASy TrEMBL
Match: A0A6J1K651 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC111492669 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 4.8e-64
Identity = 194/255 (76.08%), Postives = 202/255 (79.22%), Query Frame = 0

Query: 1   MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQ---AFHHQQQQ 60
           MDF GGGNWSMIPNIP L+NSSNLS QES++LQQQQFSLQ QQQQQQQQ   +FHHQ QQ
Sbjct: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQQLSFHHQPQQ 60

Query: 61  FQPQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQ 120
           FQPQIQPQQQFQQQQ SPQFQ  QPSPQIQPQQQ S QFQQQ+QPQHFP           
Sbjct: 61  FQPQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFP----------- 120

Query: 121 QQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSL 180
                                QQQQQQQQQQ   QQQQQ+  QQQQQQQ+QQQYHQHQSL
Sbjct: 121 ---------------------QQQQQQQQQQYHFQQQQQRLLQQQQQQQKQQQYHQHQSL 180

Query: 181 ASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEG 240
           ASHFHL HLVEKLADAIE G RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEG
Sbjct: 181 ASHFHLFHLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEG 223

Query: 241 QKKKLEEHEQLLSHR 252
           QKKKLEEHEQLLS+R
Sbjct: 241 QKKKLEEHEQLLSYR 223

BLAST of MELO3C030574 vs. ExPASy TrEMBL
Match: A0A6J1D301 (Mediator of RNA polymerase II transcription subunit 9 OS=Momordica charantia OX=3673 GN=LOC111016860 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 8.2e-64
Identity = 198/252 (78.57%), Postives = 206/252 (81.75%), Query Frame = 0

Query: 1   MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQAFHHQQQQFQP 60
           MDF GGGNWSMIPNIP L+NSSNLS QES++LQQQQFSL      QQQQ FHHQQQQFQP
Sbjct: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSL------QQQQPFHHQQQQFQP 60

Query: 61  QIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQQQQ 120
           Q+QP QQFQQQQ SPQFQ QQPSPQIQP QQPSPQFQQQLQPQHFP              
Sbjct: 61  QLQP-QQFQQQQPSPQFQQQQPSPQIQP-QQPSPQFQQQLQPQHFP-------------- 120

Query: 121 QQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASH 180
                      QQQQQQQQ   QQQQQQQQQ+  QQQQQQQQQQQQQQQQYHQHQSLASH
Sbjct: 121 -----------QQQQQQQQYHFQQQQQQQQQRLLQQQQQQQQQQQQQQQQYHQHQSLASH 180

Query: 181 FHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKK 240
           FHL HLVEKLADAIENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTV+GQKK
Sbjct: 181 FHLFHLVEKLADAIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVDGQKK 219

Query: 241 KLEEHEQLLSHR 252
           KLEEH+QLL+HR
Sbjct: 241 KLEEHKQLLNHR 219

BLAST of MELO3C030574 vs. ExPASy TrEMBL
Match: A0A6J1HX54 (Mediator of RNA polymerase II transcription subunit 9 OS=Cucurbita maxima OX=3661 GN=LOC111467667 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.0e-61
Identity = 181/261 (69.35%), Postives = 186/261 (71.26%), Query Frame = 0

Query: 1   MDFPGGGNWSMIPNIPNLTNSSNLS----------QESIFLQQQQFSLQHQQQQQQQQAF 60
           MDF  GGNWSMIPNIPNL+NSSNLS          QES++LQQQQFSLQ QQQQQQQQ+F
Sbjct: 1   MDF-SGGNWSMIPNIPNLSNSSNLSNHSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQSF 60

Query: 61  HHQQQQFQPQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQ 120
           H QQQQFQPQIQ QQQFQQQQLSPQFQ          QQQPSPQFQQQLQPQHFP     
Sbjct: 61  HQQQQQFQPQIQSQQQFQQQQLSPQFQ----------QQQPSPQFQQQLQPQHFP----- 120

Query: 121 QYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQY 180
                                                  QQQQQQQQQ   QQQQQQQQY
Sbjct: 121 ---------------------------------------QQQQQQQQQYHFQQQQQQQQY 180

Query: 181 HQHQSLASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSK 240
           HQHQSLASHFHL HLVEKLAD IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSK
Sbjct: 181 HQHQSLASHFHLFHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSK 206

Query: 241 AMTVEGQKKKLEEHEQLLSHR 252
           AMTVEGQKKKLEEHEQLL+HR
Sbjct: 241 AMTVEGQKKKLEEHEQLLNHR 206

BLAST of MELO3C030574 vs. TAIR 10
Match: AT1G55080.1 (MED9; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29580.1); Has 67203 Blast hits to 25757 proteins in 1293 species: Archae - 12; Bacteria - 4374; Metazoa - 24340; Fungi - 7940; Plants - 5927; Viruses - 273; Other Eukaryotes - 24337 (source: NCBI BLink). )

HSP 1 Score: 91.7 bits (226), Expect = 1.4e-18
Identity = 144/256 (56.25%), Postives = 157/256 (61.33%), Query Frame = 0

Query: 5   GGGNWSMIPNIP---NLTNSSNLSQESIFLQQQQFSLQHQQQQQQQQAFHHQQQQFQPQI 64
           GGGNWSMIPN+    N    +N  Q+ +FLQQQQ  LQ QQQQQQQQ FH QQQQ     
Sbjct: 7   GGGNWSMIPNVQAQGNFGTPTNHDQQ-LFLQQQQ--LQQQQQQQQQQQFHLQQQQ----- 66

Query: 65  QPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQYHFQQQQQQQ 124
             Q Q QQQQ  PQ            QQQ   Q+QQ  Q QHF QQ       QQ QQQQ
Sbjct: 67  --QTQQQQQQFQPQ------------QQQEMQQYQQFQQQQHFIQQ-------QQFQQQQ 126

Query: 125 RLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFH 184
           RLLQ    Q Q  Q    QQ      Q      QQQQQ  Q   Q  Q  QHQSLASHFH
Sbjct: 127 RLLQSPPLQPQSLQSPPPQQTMVHTPQSMMHTPQQQQQLVQTPVQTPQ--QHQSLASHFH 186

Query: 185 LLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKL 244
           L  +VEKLAD IENGTRDQ SDALVN+LN+HF+KCQQLLNSISGSL SK MTV+GQK+ +
Sbjct: 187 LYPMVEKLADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSKTMTVDGQKRNV 229

Query: 245 EEHEQLLSHRSIRDFV 258
           EE EQLL  R  RD +
Sbjct: 247 EESEQLLQQR--RDLI 229

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011652352.21.3e-7990.23mediator of RNA polymerase II transcription subunit 9 [Cucumis sativus] >KAE8651... [more]
XP_038903145.11.1e-7590.63mediator of RNA polymerase II transcription subunit 9 [Benincasa hispida][more]
XP_023542032.13.5e-6982.21mediator of RNA polymerase II transcription subunit 9-like [Cucurbita pepo subsp... [more]
KAG6574160.16.0e-6978.91Mediator of RNA polymerase II transcription subunit 9, partial [Cucurbita argyro... [more]
XP_022944890.17.8e-6980.00mediator of RNA polymerase II transcription subunit 9-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Q8RWA21.9e-1756.25Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A6J1FZC23.8e-6980.00mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata... [more]
A0A6J1GCY02.5e-6573.09mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata... [more]
A0A6J1K6514.8e-6476.08mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita maxima O... [more]
A0A6J1D3018.2e-6478.57Mediator of RNA polymerase II transcription subunit 9 OS=Momordica charantia OX=... [more]
A0A6J1HX541.0e-6169.35Mediator of RNA polymerase II transcription subunit 9 OS=Cucurbita maxima OX=366... [more]
Match NameE-valueIdentityDescription
AT1G55080.11.4e-1856.25MED9; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G2958... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 114..169
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..111
IPR038790Mediator of RNA polymerase II transcription subunit 9, plantPANTHERPTHR37188MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT-RELATEDcoord: 147..252

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030574.1MELO3C030574.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016592 mediator complex