MELO3C030547 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030547
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr05: 18755891 .. 18756634 (+)
RNA-Seq Expression	MELO3C030547
Synteny	MELO3C030547

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGGGCCATCATGTAGTGGCTTTGGATGGAATGAAGAATTCCAATGCATCATCGCAGAACGGGATTTGTTTGATAGTTGGATTAAGGTATTAATTTCATAATGCAATTATACGTATTTTTTATAATCACAATCATCAACTAATCTCCCTAAATTACATTTGTACAGAGTCATCCTGCAGCCAAAGGCCTTCTACACAAATCATTTCCATATTATGATGATCTGTCCTATGTCTTTGGCAAAGATCGGGCAACGGGAGCACGTTCAGAGACCTTTCCTAATGTAGGATCTAATGTGTCGAACATGTTTAATGACACAATTCCCCTTGGTGATTCACATGATGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATGTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAGAAATTGTTCAAGTGTAAGTAAGAGGAAACGAGGTAGCGAACGTTATGAAACGGTAGAGGTGATCAGGAGTGTAATGGAATTTGGAAATGAGCAATTAAAGGCAATTGCAGATTGGCCAAAAGAGAAGCGTGCAATGGAGGTCGAAATGCGTGCTCAAGTTGTGAAACAACTGCAAGATATCCCTAAACTACGAAGCCAAGATAGGGCAAAGCTTATGCAAATCCTATTCCGTAGTTTGGAGGCCATTGAGGGATTCTTGTCGATTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGCAAAATA

mRNA sequence

ATGAGGGGGCCATCATGTAGTGGCTTTGGATGGAATGAAGAATTCCAATGCATCATCGCAGAACGGGATTTGTTTGATACCAAAGGCCTTCTACACAAATCATTTCCATATTATGATGATCTGTCCTATGTCTTTGGCAAAGATCGGGCAACGGGAGCACGTTCAGAGACCTTTCCTAATGTAGGATCTAATGTGTCGAACATGTTTAATGACACAATTCCCCTTGGTGATTCACATGATGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATGTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAGAAATTGTTCAAGTGTAAGTAAGAGGAAACGAGGTAGCGAACGTTATGAAACGGTAGAGGTGATCAGGAGTGTAATGGAATTTGGAAATGAATTGGCCAAAAGAGAAGCGTGCAATGGAGGTCGAAATGCGTGCTCAAGTTGTGAAACAACTGCAAGATATCCCTAAACTACGAAGCCAAGATAGGGCAAAGCTTATGCAAATCCTATTCCGTAGTTTGGAGGCCATTGAGGGATTCTTGTCGATTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGCAAAATA

Coding sequence (CDS)

ATGAGGGGGCCATCATGTAGTGGCTTTGGATGGAATGAAGAATTCCAATGCATCATCGCAGAACGGGATTTGTTTGATACCAAAGGCCTTCTACACAAATCATTTCCATATTATGATGATCTGTCCTATGTCTTTGGCAAAGATCGGGCAACGGGAGCACGTTCAGAGACCTTTCCTAATGTAGGATCTAATGTGTCGAACATGTTTAATGACACAATTCCCCTTGGTGATTCACATGATGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATGTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAGAAATTGTTCAAGTGTAAGTAAGAGGAAACGAGGTAGCGAACGTTATGAAACGGTAGAGGTGATCAGGAGTGTAATGGAATTTGGAAATGAATTGGCCAAAAGAGAAGCGTGCAATGGAGGTCGAAATGCGTGCTCAAGTTGTGAAACAACTGCAAGATATCCCTAA

Protein sequence

MRGPSCSGFGWNEEFQCIIAERDLFDTKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNELAKREACNGGRNACSSCETTARYP

Homology

[Close]

BLAST of MELO3C030547 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.0 bits (728), Expect = 4.0e-73
Identity = 140/151 (92.72%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MRGPSCSGFGWNEEFQCIIAERDLFDT--------KGLLHKSFPYYDDLSYVFGKDRATG 60
           MRGPSCSGFGWNEEFQCIIAERDLFD+        KGLLHKSFPYYDDLSYVFGKDRATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNC 120
           ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNC
Sbjct: 144 ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNC 203

Query: 121 SSVSKRKRGSERYETVEVIRSVMEFGNELAK 144
           SSVSKRKRGSERYETVEVIRSVMEFGNE  K
Sbjct: 204 SSVSKRKRGSERYETVEVIRSVMEFGNEQLK 234

[Close]

BLAST of MELO3C030547 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 217.6 bits (553), Expect = 7.9e-53
Identity = 112/151 (74.17%), Postives = 114/151 (75.50%), Query Frame = 0


Query: 1   MRGPSCSGFGWNEEFQCIIAERDLFD--------TKGLLHKSFPYYDDLSYVFGKDRATG 60
           MRGPSCSGFGWNEEFQCIIAERDLFD        TKGLLHKSFPYYDDLSYVFGKDRATG
Sbjct: 366 MRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGKDRATG 425

Query: 61  ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNC 120
           ARSETF +VGSNV NMFNDTIPLGDSHDEDIPTMYSQGVH+SPDEMFGIRA         
Sbjct: 426 ARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRA--------- 485

Query: 121 SSVSKRKRGSERYETVEVIRSVMEFGNELAK 144
                           EVIRSVMEFGNE  K
Sbjct: 486 ----------------EVIRSVMEFGNEQLK 491

[Close]

BLAST of MELO3C030547 vs. NCBI nr
Match: KAA0056515.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK12085.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 196.1 bits (497), Expect = 2.4e-46
Identity = 97/116 (83.62%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 28  KGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMY 87
           KGLLHKSFPYYDDLSYVFGKDRAT  RSETF  VGSNV NMFND +PLGDSH++DIP MY
Sbjct: 174 KGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMY 233

Query: 88  SQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNELAK 144
           SQGVHMS DEMFGIRAGQASERRNCSS SKRKRGS+ YE VEVIRSVM+FGN   K
Sbjct: 234 SQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGSKHYEMVEVIRSVMKFGNNQLK 289

[Close]

BLAST of MELO3C030547 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 4.2e-46
Identity = 98/134 (73.13%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 10  GWNEEFQCIIAERDLFDTKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMF 69
           GW+E        RD    K LLHKSFPYYDDL YVFGKDRAT ARSETF +VGSNV NMF
Sbjct: 301 GWSE-------WRDQLAPKDLLHKSFPYYDDLFYVFGKDRATRARSETFADVGSNVPNMF 360

Query: 70  NDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVE 129
           N  +PL DSHD+DIP MYSQGVHMSPDEMFGIRAGQASER+NCSS SKRK+GS+ YETVE
Sbjct: 361 NGDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYETVE 420

Query: 130 VIRSVMEFGNELAK 144
           VI+S +EFGN+  K
Sbjct: 421 VIKSAIEFGNDQLK 427

[Close]

BLAST of MELO3C030547 vs. NCBI nr
Match: KAA0042340.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 189.5 bits (480), Expect = 2.3e-44
Identity = 93/116 (80.17%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 28  KGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMY 87
           KGLL+KSFPYYDD+SYVFGKD+AT ARSETF +VGSN+ NMFND +PLGDSH EDIPTMY
Sbjct: 18  KGLLNKSFPYYDDVSYVFGKDQATEARSETFADVGSNIPNMFNDGVPLGDSHHEDIPTMY 77

Query: 88  SQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNELAK 144
           SQGV MS DEMFG RAGQASERRNCSS SKRK+GS+ YETVEVIRS M+FGN+  K
Sbjct: 78  SQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLK 133

[Close]

BLAST of MELO3C030547 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.9e-73
Identity = 140/151 (92.72%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MRGPSCSGFGWNEEFQCIIAERDLFDT--------KGLLHKSFPYYDDLSYVFGKDRATG 60
           MRGPSCSGFGWNEEFQCIIAERDLFD+        KGLLHKSFPYYDDLSYVFGKDRATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNC 120
           ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNC
Sbjct: 144 ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNC 203

Query: 121 SSVSKRKRGSERYETVEVIRSVMEFGNELAK 144
           SSVSKRKRGSERYETVEVIRSVMEFGNE  K
Sbjct: 204 SSVSKRKRGSERYETVEVIRSVMEFGNEQLK 234

[Close]

BLAST of MELO3C030547 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.9e-73
Identity = 140/151 (92.72%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MRGPSCSGFGWNEEFQCIIAERDLFDT--------KGLLHKSFPYYDDLSYVFGKDRATG 60
           MRGPSCSGFGWNEEFQCIIAERDLFD+        KGLLHKSFPYYDDLSYVFGKDRATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNC 120
           ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNC
Sbjct: 144 ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNC 203

Query: 121 SSVSKRKRGSERYETVEVIRSVMEFGNELAK 144
           SSVSKRKRGSERYETVEVIRSVMEFGNE  K
Sbjct: 204 SSVSKRKRGSERYETVEVIRSVMEFGNEQLK 234

[Close]

BLAST of MELO3C030547 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.8e-53
Identity = 112/151 (74.17%), Postives = 114/151 (75.50%), Query Frame = 0


Query: 1   MRGPSCSGFGWNEEFQCIIAERDLFD--------TKGLLHKSFPYYDDLSYVFGKDRATG 60
           MRGPSCSGFGWNEEFQCIIAERDLFD        TKGLLHKSFPYYDDLSYVFGKDRATG
Sbjct: 366 MRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGKDRATG 425

Query: 61  ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNC 120
           ARSETF +VGSNV NMFNDTIPLGDSHDEDIPTMYSQGVH+SPDEMFGIRA         
Sbjct: 426 ARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRA--------- 485

Query: 121 SSVSKRKRGSERYETVEVIRSVMEFGNELAK 144
                           EVIRSVMEFGNE  K
Sbjct: 486 ----------------EVIRSVMEFGNEQLK 491

[Close]

BLAST of MELO3C030547 vs. ExPASy TrEMBL
Match: A0A5A7USN6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00100 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.2e-46
Identity = 97/116 (83.62%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 28  KGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMY 87
           KGLLHKSFPYYDDLSYVFGKDRAT  RSETF  VGSNV NMFND +PLGDSH++DIP MY
Sbjct: 174 KGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMY 233

Query: 88  SQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNELAK 144
           SQGVHMS DEMFGIRAGQASERRNCSS SKRKRGS+ YE VEVIRSVM+FGN   K
Sbjct: 234 SQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGSKHYEMVEVIRSVMKFGNNQLK 289

[Close]

BLAST of MELO3C030547 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.0e-46
Identity = 98/134 (73.13%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 10  GWNEEFQCIIAERDLFDTKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMF 69
           GW+E        RD    K LLHKSFPYYDDL YVFGKDRAT ARSETF +VGSNV NMF
Sbjct: 301 GWSE-------WRDQLAPKDLLHKSFPYYDDLFYVFGKDRATRARSETFADVGSNVPNMF 360

Query: 70  NDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVE 129
           N  +PL DSHD+DIP MYSQGVHMSPDEMFGIRAGQASER+NCSS SKRK+GS+ YETVE
Sbjct: 361 NGDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYETVE 420

Query: 130 VIRSVMEFGNELAK 144
           VI+S +EFGN+  K
Sbjct: 421 VIKSAIEFGNDQLK 427

The following BLAST results are available for this feature:

BLAST of MELO3C030547 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441954.1	4.0e-73	92.72	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0062747.1	7.9e-53	74.17	retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p...	[more]
KAA0056515.1	2.4e-46	83.62	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK12085.1 putative nucleas...	[more]
KAA0033290.1	4.2e-46	73.13	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas...	[more]
KAA0042340.1	2.3e-44	80.17	retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon p...	[more]

BLAST of MELO3C030547 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030547 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0H7	1.9e-73	92.72	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	1.9e-73	92.72	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5D3DG22	3.8e-53	74.17	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7USN6	1.2e-46	83.62	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7SQU2	2.0e-46	73.13	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of MELO3C030547 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 2..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030547.1	MELO3C030547.1	mRNA