MELO3C030494 (gene) Melon (DHL92) v4

Overview
NameMELO3C030494
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCACTA en-spm transposon protein
Locationchr08: 10729421 .. 10729571 (-)
RNA-Seq ExpressionMELO3C030494
SyntenyMELO3C030494
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAAGATGACCCGTGTGAGTAGTTTCACGACGTCATTTCCGCAGTCCACAGTAGAGCTTCAATTACAGGCTAAGCTTGATAAAGTTATGCAACATATTAAAGAACAGACAAGAAATCACGAAGCGTTAGTTTCAGAAGTGGAACAAATAGG

mRNA sequence

GCAAGATGACCCGTGTGAGTAGTTTCACGACGTCATTTCCGCAGTCCACAGTAGAGCTTCAATTACAGGCTAAGCTTGATAAAGTTATGCAACATATTAAAGAACAGACAAGAAATCACGAAGCGTTAGTTTCAGAAGTGGAACAAATAGG

Coding sequence (CDS)

ATGACCCGTGTGAGTAGTTTCACGACGTCATTTCCGCAGTCCACAGTAGAGCTTCAATTACAGGCTAAGCTTGATAAAGTTATGCAACATATTAAAGAACAGACAAGAAATCACGAAGCGTTAGTTTCAGAAGTGGAACAAATA

Protein sequence

MTRVSSFTTSFPQSTVELQLQAKLDKVMQHIKEQTRNHEALVSEVEQI
Homology
BLAST of MELO3C030494 vs. NCBI nr
Match: KAA0046352.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa] >TYK30516.1 zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-08
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 2  TRVSSFTTSFPQSTVELQLQAKLDKVMQHIKEQTRNHEALVSEVEQI 49
          T VSS TTS PQST+ELQLQAK D+ MQ I+E TRNHEALVSEVEQ+
Sbjct: 48 TSVSSSTTSCPQSTIELQLQAKFDQAMQRIEEHTRNHEALVSEVEQM 94

BLAST of MELO3C030494 vs. NCBI nr
Match: TYK23854.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 5.0e-08
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 2   TRVSSFTTSFPQSTVELQLQAKLDKVMQHIKEQTRNHEALVSEVEQI 49
           T +SS TTS+PQSTVELQLQAKLD+ MQ I+E TRNH+ LVSEVEQ+
Sbjct: 207 TSLSSSTTSYPQSTVELQLQAKLDQAMQRIEEHTRNHKVLVSEVEQM 253

BLAST of MELO3C030494 vs. NCBI nr
Match: KAA0051366.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 5.0e-08
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 2   TRVSSFTTSFPQSTVELQLQAKLDKVMQHIKEQTRNHEALVSEVEQI 49
           T +SS TTS+PQSTVELQLQAKLD+ MQ I+E TRNH+ LVSEVEQ+
Sbjct: 230 TSLSSSTTSYPQSTVELQLQAKLDQAMQRIEEHTRNHKVLVSEVEQM 276

BLAST of MELO3C030494 vs. NCBI nr
Match: KAA0037426.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK00217.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 1.9e-07
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0

Query: 5   SSFTTSFPQSTVELQLQAKLDKVMQHIKEQTRNHEALVSEVEQI 49
           SS TTS PQST+ELQLQ KLDK +Q I+EQTRNHE LVSEVEQ+
Sbjct: 92  SSSTTSCPQSTIELQLQGKLDKTIQRIEEQTRNHETLVSEVEQM 135

BLAST of MELO3C030494 vs. NCBI nr
Match: TYK08895.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 3.3e-07
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 1   MTRVSSFTTSFPQSTVELQLQAKLDKVMQHIKEQTRNHEALVSEVEQI 49
           MT  SS TTS PQST++LQLQAKLD+ MQ I+EQTRNH+ LVS+VE++
Sbjct: 240 MTNASSSTTSGPQSTIQLQLQAKLDQAMQQIEEQTRNHDVLVSKVERM 287

BLAST of MELO3C030494 vs. ExPASy TrEMBL
Match: A0A5A7TSG3 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00620 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 2  TRVSSFTTSFPQSTVELQLQAKLDKVMQHIKEQTRNHEALVSEVEQI 49
          T VSS TTS PQST+ELQLQAK D+ MQ I+E TRNHEALVSEVEQ+
Sbjct: 48 TSVSSSTTSCPQSTIELQLQAKFDQAMQRIEEHTRNHEALVSEVEQM 94

BLAST of MELO3C030494 vs. ExPASy TrEMBL
Match: A0A5D3DJN9 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00240 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-08
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 2   TRVSSFTTSFPQSTVELQLQAKLDKVMQHIKEQTRNHEALVSEVEQI 49
           T +SS TTS+PQSTVELQLQAKLD+ MQ I+E TRNH+ LVSEVEQ+
Sbjct: 207 TSLSSSTTSYPQSTVELQLQAKLDQAMQRIEEHTRNHKVLVSEVEQM 253

BLAST of MELO3C030494 vs. ExPASy TrEMBL
Match: A0A5A7UAZ2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00910 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-08
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 2   TRVSSFTTSFPQSTVELQLQAKLDKVMQHIKEQTRNHEALVSEVEQI 49
           T +SS TTS+PQSTVELQLQAKLD+ MQ I+E TRNH+ LVSEVEQ+
Sbjct: 230 TSLSSSTTSYPQSTVELQLQAKLDQAMQRIEEHTRNHKVLVSEVEQM 276

BLAST of MELO3C030494 vs. ExPASy TrEMBL
Match: A0A5D3BM26 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1582G00090 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.2e-08
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0

Query: 5   SSFTTSFPQSTVELQLQAKLDKVMQHIKEQTRNHEALVSEVEQI 49
           SS TTS PQST+ELQLQ KLDK +Q I+EQTRNHE LVSEVEQ+
Sbjct: 92  SSSTTSCPQSTIELQLQGKLDKTIQRIEEQTRNHETLVSEVEQM 135

BLAST of MELO3C030494 vs. ExPASy TrEMBL
Match: A0A5A7U5K9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G001020 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 1  MTRVSSFTTSFPQSTVELQLQAKLDKVMQHIKEQTRNHEALVSEVEQI 49
          MT  SS TTS PQST++LQLQAKLD+ MQ I+EQTRNH+ LVS+VE++
Sbjct: 39 MTNASSSTTSGPQSTIQLQLQAKLDQAMQQIEEQTRNHDVLVSKVERM 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0046352.13.8e-0876.60zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa] >TYK30516.1 zin... [more]
TYK23854.15.0e-0874.47CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0051366.15.0e-0874.47CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0037426.11.9e-0777.27CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK00217.1 CACTA en-... [more]
TYK08895.13.3e-0768.75gag/pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TSG31.9e-0876.60Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3DJN92.4e-0874.47CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7UAZ22.4e-0874.47CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3BM269.2e-0877.27CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7U5K91.6e-0768.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030494.1MELO3C030494.1mRNA