MELO3C030476 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030476
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	CACTA en-spm transposon protein
Location	chr04: 10736894 .. 10738093 (+)
RNA-Seq Expression	MELO3C030476
Synteny	MELO3C030476

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAGAAAGAGGAAAAAGAGATCAATTCGGTTGATGAAACGAAGAGAGGAGAAACTTTCAGTCGTTGCCTTCGTTGCCTTCGTCGCCATGAGCCTGCCGTTGTGCCTCTCCCGCCATTTGCCACTGCACATCCCTACTTGAGGTAAGCTTAAAATCCTAAATCCTTAAAAATGTTAGTTTAGGCTAGGTTTGTTAGATAGTTTAGGTTTTTGTTTTTTAAAATTATTTTTAGGATTTTAATGATGAATTTGTTTTAGGATATTGTTTAGGATTAGATTTTGGTTTTTGAAGTTGGAATTTTGAATGTGGGTTGAAGGGGGTATTTGAGAAATTGATTTGGAGAATTGAAATTTTGAATGTGTAGGTTTAATTTGAAGAGGTGGAGTGGGGTTTAATTGAATATTTGAAGGGGGTGGGTTGAAAATTAGAGGGGGTTGAATTGAAATATTAAAGGGAGTGGGGGGTTTGAGTTAAACTTTTGAGGAATTAGGGTTGGAAATTTGAGGGGGGAGGGGGGCGATGGCTATTATTGTGTTAGAACTTTTGTAATGTGTGTTAAGATTCATTTTGGCTATTCTGCAGTTATGGTAGCCTTTAGTTCAATTCTAATAGTTATTCGTTAGTAGTTTTTAATAAATTTGTTGTTGATTTGGGATGGCTATCCTGCAGTTATGATAGTCTTTTTTGTTTTGAATTTGTTTGTATTTCTGAGGGTTTGAAGGGGTGATAGTAGGATAGCTTGTAAGGTAGCATTGTTGGAAAAGGTAGGTAGGATGTGAAAATTTTGAGAGATTGTATATTTATGGGAGTAAGTTTAGGATGTGAGAGGACAGAAATATGTTTCTAATCAAACCTATTTATGTTTTAGGGACTTAAACGATGGACAAGGGTTGGATGAAACTTAGGAATATGTTTTCCTTTGAGTATAGAGAAGGAGTGACCCAATTTTTAGAATTTGCCAAGTTTCATGTTGATGCCTACGGACGAATAAGGTGTCCTAGGCAAGAGATGTATGAACTTAAATTGGACCTCACTAGAGGGTGTGGAACGACATCTACTGACTATTGTAATCTCCCCCTACTACACATAATGGGTGTATCATGGAGAGTCATTAAGCTTTAAAGGTATAGAAAAATTTAAGGAAGGAACTAGTAGTAACCTTTTTTATGAAGGAACTAGTAGTCGGCAGTTTGATG

mRNA sequence

ATGAAAGAGAAAGAGGAAAAAGAGATCAATTCGGTTGATGAAACGAAGAGAGGAGAAACTTTCAGTCGTTGCCTTCGTTGCCTTCGTCGCCATGAGCCTGCCGTTGTGCCTCTCCCGCCATTTGCCACTGCACATCCCTACTTGAGGGACTTAAACGATGGACAAGGGTTGGATGAAACTTAGGAATATGTTTTCCTTTGAGTATAGAGAAGGAGTGACCCAATTTTTAGAATTTGCCAAGTTTCATGTTGATGCCTACGGACGAATAAGGTGTCCTAGGCAAGAGATGTATGAACTTAAATTGGACCTCACTAGAGGGTGTGGAACGACATCTACTGACTATTGTAATCTCCCCCTACTACACATAATGGGTGTATCATGGAGAGTCATTAAGCTTTAAAGGTATAGAAAAATTTAAGGAAGGAACTAGTAGTAACCTTTTTTATGAAGGAACTAGTAGTCGGCAGTTTGATG

Coding sequence (CDS)

ATGGACAAGGGTTGGATGAAACTTAGGAATATGTTTTCCTTTGAGTATAGAGAAGGAGTGACCCAATTTTTAGAATTTGCCAAGTTTCATGTTGATGCCTACGGACGAATAAGGTGTCCTAGGCAAGAGATGTATGAACTTAAATTGGACCTCACTAGAGGGTGTGGAACGACATCTACTGACTATTGTAATCTCCCCCTACTACACATAATGGGTGTATCATGGAGAGTCATTAAGCTTTAA

Protein sequence

MDKGWMKLRNMFSFEYREGVTQFLEFAKFHVDAYGRIRCPRQEMYELKLDLTRGCGTTSTDYCNLPLLHIMGVSWRVIKL

Homology

[Close]

BLAST of MELO3C030476 vs. NCBI nr
Match: KAA0062293.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK26693.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-18
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 6   MKLRNMFSFEYREGVTQFLEFAKFHVDAYGRIRCPRQEMYELKLDLTRGCGTTSTDYCNL 65
           MKLRN F  EYREGVTQFLEF KFHVDAYGRI+   +EMYELKL+LTRGCG  STDY N+
Sbjct: 76  MKLRNKFFLEYREGVTQFLEFVKFHVDAYGRIKVSMREMYELKLELTRGCGMISTDYWNI 135

Query: 66  P 67
           P
Sbjct: 136 P 136

[Close]

BLAST of MELO3C030476 vs. NCBI nr
Match: KAA0062995.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 5.1e-13
Identity = 38/54 (70.37%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 1   MDKGWMKLRNMFSFEYREGVTQFLEFAKFHVDAYGRIRCPRQEMYELKLDLTRG 55
           MDKGWMKLRN  S EYR GVTQFLEFAKFHVDAYGR+RCP +    L L    G
Sbjct: 291 MDKGWMKLRNKLSLEYRHGVTQFLEFAKFHVDAYGRLRCPCKRCLNLNLSSLEG 344

[Close]

BLAST of MELO3C030476 vs. NCBI nr
Match: KAA0052152.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK05117.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 8.6e-13
Identity = 39/65 (60.00%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 1  MDKGWMKLRNMFSFEYREGVTQFLEFAKFHVDAYGRIRCPRQEMYELKLDLTRGCGTTST 60
          MD GWMKLRN  S EYR GVTQFLEFAKFHVDAY R+RCP +    L  +   G   TS 
Sbjct: 1  MDNGWMKLRNKLSLEYRHGVTQFLEFAKFHVDAYERLRCPCKRCLNLNWNSLEGVELTSA 60

Query: 61 DYCNL 66
           Y N+
Sbjct: 61 YYWNI 65

[Close]

BLAST of MELO3C030476 vs. NCBI nr
Match: TYK16353.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 2.5e-12
Identity = 37/54 (68.52%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 1  MDKGWMKLRNMFSFEYREGVTQFLEFAKFHVDAYGRIRCPRQEMYELKLDLTRG 55
          MDKGWMKLRN  S EYR GVTQFLEFAKFHVDAYGR+RCP +    L      G
Sbjct: 1  MDKGWMKLRNKLSLEYRHGVTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLEG 54

[Close]

BLAST of MELO3C030476 vs. NCBI nr
Match: TYJ95864.1 (uncharacterized protein E5676_scaffold110G001580 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 2.5e-12
Identity = 37/54 (68.52%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 1   MDKGWMKLRNMFSFEYREGVTQFLEFAKFHVDAYGRIRCPRQEMYELKLDLTRG 55
           MDKGWMKLRN  S EYR GVTQFLEFAKFHVDAYGR+RCP +    L      G
Sbjct: 52  MDKGWMKLRNKLSLEYRHGVTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLEG 105

[Close]

BLAST of MELO3C030476 vs. ExPASy TrEMBL
Match: A0A5A7V2I6 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003540 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.7e-19
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 6   MKLRNMFSFEYREGVTQFLEFAKFHVDAYGRIRCPRQEMYELKLDLTRGCGTTSTDYCNL 65
           MKLRN F  EYREGVTQFLEF KFHVDAYGRI+   +EMYELKL+LTRGCG  STDY N+
Sbjct: 76  MKLRNKFFLEYREGVTQFLEFVKFHVDAYGRIKVSMREMYELKLELTRGCGMISTDYWNI 135

Query: 66  P 67
           P
Sbjct: 136 P 136

[Close]

BLAST of MELO3C030476 vs. ExPASy TrEMBL
Match: A0A5A7VAR5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00950 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.5e-13
Identity = 38/54 (70.37%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 1   MDKGWMKLRNMFSFEYREGVTQFLEFAKFHVDAYGRIRCPRQEMYELKLDLTRG 55
           MDKGWMKLRN  S EYR GVTQFLEFAKFHVDAYGR+RCP +    L L    G
Sbjct: 291 MDKGWMKLRNKLSLEYRHGVTQFLEFAKFHVDAYGRLRCPCKRCLNLNLSSLEG 344

[Close]

BLAST of MELO3C030476 vs. ExPASy TrEMBL
Match: A0A5A7U8S2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00210 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.2e-13
Identity = 39/65 (60.00%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 1  MDKGWMKLRNMFSFEYREGVTQFLEFAKFHVDAYGRIRCPRQEMYELKLDLTRGCGTTST 60
          MD GWMKLRN  S EYR GVTQFLEFAKFHVDAY R+RCP +    L  +   G   TS 
Sbjct: 1  MDNGWMKLRNKLSLEYRHGVTQFLEFAKFHVDAYERLRCPCKRCLNLNWNSLEGVELTSA 60

Query: 61 DYCNL 66
           Y N+
Sbjct: 61 YYWNI 65

[Close]

BLAST of MELO3C030476 vs. ExPASy TrEMBL
Match: A0A5D3BP89 (Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00540 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 37/54 (68.52%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 1   MDKGWMKLRNMFSFEYREGVTQFLEFAKFHVDAYGRIRCPRQEMYELKLDLTRG 55
           MDKGWMKLRN  S EYR GVTQFLEFAKFHVDAYGR+RCP +    L      G
Sbjct: 58  MDKGWMKLRNKLSLEYRHGVTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLEG 111

[Close]

BLAST of MELO3C030476 vs. ExPASy TrEMBL
Match: A0A5D3CWU5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001370 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 37/54 (68.52%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 1  MDKGWMKLRNMFSFEYREGVTQFLEFAKFHVDAYGRIRCPRQEMYELKLDLTRG 55
          MDKGWMKLRN  S EYR GVTQFLEFAKFHVDAYGR+RCP +    L      G
Sbjct: 1  MDKGWMKLRNKLSLEYRHGVTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLEG 54

The following BLAST results are available for this feature:

BLAST of MELO3C030476 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062293.1	1.4e-18	77.05	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK26693.1 CACTA en-...	[more]
KAA0062995.1	5.1e-13	70.37	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0052152.1	8.6e-13	60.00	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK05117.1 CACTA en-...	[more]
TYK16353.1	2.5e-12	68.52	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYJ95864.1	2.5e-12	68.52	uncharacterized protein E5676_scaffold110G001580 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C030476 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030476 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V2I6	6.7e-19	77.05	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7VAR5	2.5e-13	70.37	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7U8S2	4.2e-13	60.00	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3BP89	1.2e-12	68.52	Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CWU5	1.2e-12	68.52	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MELO3C030476 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030476.1	MELO3C030476.1	mRNA