MELO3C030474 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030474
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Aldo_ket_red domain-containing protein
Location	chr04: 10482328 .. 10482659 (-)
RNA-Seq Expression	MELO3C030474
Synteny	MELO3C030474

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGTGATCACTCACCGGAGCTTTTTGAACCTTACTATCTTTAAATCCTTCACGGCTGAGACAAGAAGGCGCTATGAGAGGAGAAAGCTTGGAGCTAAAAGCTCTGTTAAGTGCTCTCAAACATCAGAAGGGTTTGCCTAAACTGTTATGGTGTCAAATGGCAAGGATTTGTTAGAATTTTGTCAAGTCCTCAATGGAATGTGGCAGATCAGCGATGGATGGGGGAAAATTGATCGTGACGCCGCGTGGAGGCAATGCTCCGATATGCCGACGTCGGACTTACAACCTTTGATATGGCAGACCACTATTCTAAAGCATCTCTGCATTGA

mRNA sequence

ATGACAGTGATCACTCACCGGAGCTTTTTGAACCTTACTATCTTTAAATCCTTCACGGCTGAGACAAGAAGGCGCTATGAGAGGAGAAAGCTTGGAGCTAAAAGCTCTGTTAAGTGCTCTCAAACATCAGAAGGGTTTGCCTAAACTGTTATGGTGTCAAATGGCAAGGATTTGTTAGAATTTTGTCAAGTCCTCAATGGAATGTGGCAGATCAGCGATGGATGGGGGAAAATTGATCGTGACGCCGCGTGGAGGCAATGCTCCGATATGCCGACGTCGGACTTACAACCTTTGATATGGCAGACCACTATTCTAAAGCATCTCTGCATTGA

Coding sequence (CDS)

ATGGTGTCAAATGGCAAGGATTTGTTAGAATTTTGTCAAGTCCTCAATGGAATGTGGCAGATCAGCGATGGATGGGGGAAAATTGATCGTGACGCCGCGTGGAGGCAATGCTCCGATATGCCGACGTCGGACTTACAACCTTTGATATGGCAGACCACTATTCTAAAGCATCTCTGCATT

Protein sequence

MVSNGKDLLEFCQVLNGMWQISDGWGKIDRDAAWRQCSDMPTSDLQPLIWQTTILKHLCI

Homology

[Close]

BLAST of MELO3C030474 vs. NCBI nr
Match: KAA0057300.1 (flagellar radial spoke protein 5 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-09
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1  MVSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          MVSNGKDLLEFC+VLNGMWQ SDGWG+IDRDAA
Sbjct: 51 MVSNGKDLLEFCRVLNGMWQTSDGWGRIDRDAA 83

[Close]

BLAST of MELO3C030474 vs. NCBI nr
Match: XP_008458596.1 (PREDICTED: flagellar radial spoke protein 5 isoform X3 [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 2  VSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          VSNGKD LE C+VLNGMWQ S GWG+IDRDAA
Sbjct: 52 VSNGKDSLEICRVLNGMWQTSGGWGRIDRDAA 83

[Close]

BLAST of MELO3C030474 vs. NCBI nr
Match: XP_038902796.1 (1-deoxyxylulose-5-phosphate synthase YajO isoform X1 [Benincasa hispida])

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 2  VSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          VSNGKD LE C+VLNGMWQ S GWG+IDRDAA
Sbjct: 52 VSNGKDSLEICRVLNGMWQTSGGWGRIDRDAA 83

[Close]

BLAST of MELO3C030474 vs. NCBI nr
Match: XP_016902264.1 (PREDICTED: flagellar radial spoke protein 5 isoform X1 [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 2  VSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          VSNGKD LE C+VLNGMWQ S GWG+IDRDAA
Sbjct: 52 VSNGKDSLEICRVLNGMWQTSGGWGRIDRDAA 83

[Close]

BLAST of MELO3C030474 vs. NCBI nr
Match: KAA0033397.1 (putative oxidoreductase [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 2  VSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          VSNGKD LE C+VLNGMWQ S GWG+IDRDAA
Sbjct: 52 VSNGKDSLEICRVLNGMWQTSGGWGRIDRDAA 83

[Close]

BLAST of MELO3C030474 vs. ExPASy TrEMBL
Match: A0A5A7UQB5 (Flagellar radial spoke protein 5 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G001410 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1  MVSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          MVSNGKDLLEFC+VLNGMWQ SDGWG+IDRDAA
Sbjct: 51 MVSNGKDLLEFCRVLNGMWQTSDGWGRIDRDAA 83

[Close]

BLAST of MELO3C030474 vs. ExPASy TrEMBL
Match: A0A5A7SVR5 (Putative oxidoreductase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00480 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.5e-07
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 2  VSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          VSNGKD LE C+VLNGMWQ S GWG+IDRDAA
Sbjct: 52 VSNGKDSLEICRVLNGMWQTSGGWGRIDRDAA 83

[Close]

BLAST of MELO3C030474 vs. ExPASy TrEMBL
Match: A0A1S4E206 (flagellar radial spoke protein 5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497952 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.5e-07
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 2  VSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          VSNGKD LE C+VLNGMWQ S GWG+IDRDAA
Sbjct: 52 VSNGKDSLEICRVLNGMWQTSGGWGRIDRDAA 83

[Close]

BLAST of MELO3C030474 vs. ExPASy TrEMBL
Match: A0A1S3C7R4 (flagellar radial spoke protein 5 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497952 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.5e-07
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 2  VSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          VSNGKD LE C+VLNGMWQ S GWG+IDRDAA
Sbjct: 52 VSNGKDSLEICRVLNGMWQTSGGWGRIDRDAA 83

[Close]

BLAST of MELO3C030474 vs. ExPASy TrEMBL
Match: A0A0A0KGQ2 (Aldo_ket_red domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G151780 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.7e-06
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 2  VSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          VSNGKD LE C+VLNGMWQ S GWG+IDRD A
Sbjct: 53 VSNGKDSLEICRVLNGMWQTSGGWGRIDRDDA 84

[Close]

BLAST of MELO3C030474 vs. TAIR 10
Match: AT2G27680.1 (NAD(P)-linked oxidoreductase superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 3.0e-08
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 2  VSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          + NG D LE C+VLNGMWQ S GWGKIDR+ A
Sbjct: 49 LKNGNDSLEICRVLNGMWQTSGGWGKIDRNDA 80

The following BLAST results are available for this feature:

BLAST of MELO3C030474 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057300.1	2.5e-09	90.91	flagellar radial spoke protein 5 isoform X3 [Cucumis melo var. makuwa]	[more]
XP_008458596.1	1.5e-06	81.25	PREDICTED: flagellar radial spoke protein 5 isoform X3 [Cucumis melo]	[more]
XP_038902796.1	1.5e-06	81.25	1-deoxyxylulose-5-phosphate synthase YajO isoform X1 [Benincasa hispida]	[more]
XP_016902264.1	1.5e-06	81.25	PREDICTED: flagellar radial spoke protein 5 isoform X1 [Cucumis melo]	[more]
KAA0033397.1	1.5e-06	81.25	putative oxidoreductase [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C030474 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030474 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UQB5	1.2e-09	90.91	Flagellar radial spoke protein 5 isoform X3 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7SVR5	7.5e-07	81.25	Putative oxidoreductase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S4E206	7.5e-07	81.25	flagellar radial spoke protein 5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497...	[more]
A0A1S3C7R4	7.5e-07	81.25	flagellar radial spoke protein 5 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497...	[more]
A0A0A0KGQ2	3.7e-06	78.13	Aldo_ket_red domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G15178...	[more]

BLAST of MELO3C030474 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27680.1	3.0e-08	68.75	NAD(P)-linked oxidoreductase superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030474.1	MELO3C030474.1	mRNA