MELO3C030378 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030378
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Girdin-like
Location	chr12: 4781000 .. 4782072 (+)
RNA-Seq Expression	MELO3C030378
Synteny	MELO3C030378

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGGGGTTAACTATACACCATGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGCTTATACCACCAACTCATAATCTACAAGAGTCTTACTTTTCATACGATCTTGAAGATTGTCAAAGAAAAAACGTCGAGTAATATGCGCATGGAAATCTGTGAGGAAGATAAAAGACAAAGGACACTACAAAGAAGTTACTAATGGATACGAGGCATGGCAGGCAAACAAAAAGAAGAATATAATAGTTACCTCAAGGGAGGTAATTGAAAGAGTAAAAGAGACAAGCTTCGAACAACCAAATCAGTAGGTTGAGAAGAGCATATAATTAGAAGAGAAAAATCGACTGTTAAAGCAAGAGATAGAAACTTCGTAGAGAGACAAGTTAATGGATGGATCATGCGTCTTATTTACAGAAAGAACTTGAAAAGACCAAGAGTTTCTTAAGAAATCAAGATAAGTTAGAAAAGAATCCTGAGGCGTTAGATAAGGAGATGAGACGAATGAATGAAGCAAGTAGAAGTTTGAAAAATGAAAAGACAACATTACAAGTAACAATAGAGTCACAAGATGAATATATTAAAGATTTAGAAAGCGGGAAGGAATATTTTCTTGAGCTTGTCAATGATTTGAATACATCAATTGGAAAATGAAAAACACAGATAATGGATTTGGAAGCACACAATCATTCTCTGCATCAAACTATTGATAACCTACATCTAAAGATGGTCGAACGCTTTAAAGAGTATGAGATACTGAAAAATTATGTTAATTCCTTACGCTATTAACTTACTGCATTTCAAAATTTAAGTGAGAGGATAGTGGAGGAATATGAATCATTGAAGACAGATTACATGCAAATGAAGGTTGGTTATGATATGCAAATGAGAGATTTCTAGGTGTAAGTGAAATGTGTAGATCAAACAATTGAATTTCTCATAATGGTGTCCAGAAGAGCAAATGGTTTTGTAAAATAGGCAGCTGATTTGAGGGTTAATTTTTCTTAATGCAATCTCATGCAGATGATCTAAATATATTCTTGAATGAAGTTCATTAATTGTTTGGTCGGCTATGTTCATTAA

mRNA sequence

GAAGGGGTTAACTATACACCATGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGCTTATACCACCAACTCATAATCTACAAGAGTCTTACTTTTCATACGATCTTGAAGATTGTCAAAGAAAAAACGTCGAGTAATATGCGCATGGAAATCTGTGAGGAAGATAAAAGACAAAGGACACTACAAAGAAGTTACTAATGGATACGAGGCATGGCAGGCAAACAAAAAGAAGAATATAATAGTTACCTCAAGGGAGAAAGAACTTGAAAAGACCAAGAGTTTCTTAAGAAATCAAGATAAGTTAGAAAAGAATCCTGAGGCGTTAGATAAGGAGATGAGACGAATGAATGAAGCAAGTAGAAGTTTGAAAAATGAAAAGACAACATTACAAGTAACAATAGAGTCACAAGATGAATATATTAAAGATTTAGAAAGCGGGAAGGAATATTTTCTTGAGCTTGTCAATGATTTGAATACATCAATTGGAAAATGAAAAACACAGATAATGGATTTGGAAGCACACAATCATTCTCTGCATCAAACTATTGATAACCTACATCTAAAGATGGTCGAACGCTTTAAAGAGTATGAGATACTGAAAAATTATGTTAATTCCTTACGCTATTAACTTACTGCATTTCAAAATTTAAGTGAGAGGATAGTGGAGGAATATGAATCATTGAAGACAGATTACATGCAAATGAAGGTTGGTTATGATATGCAAATGAGAGATTTCTAGGTGTAAGTGAAATGTGTAGATCAAACAATTGAATTTCTCATAATGGTGTCCAGAAGAGCAAATGGTTTTGTAAAATAGGCAGCTGATTTGAGGGTTAATTTTTCTTAATGCAATCTCATGCAGATGATCTAAATATATTCTTGAATGAAGTTCATTAATTGTTTGGTCGGCTATGTTCATTAA

Coding sequence (CDS)

ATGAGACGAATGAATGAAGCAAGTAGAAGTTTGAAAAATGAAAAGACAACATTACAAGTAACAATAGAGTCACAAGATGAATATATTAAAGATTTAGAAAGCGGGAAGGAATATTTTCTTGAGCTTGTCAATGATTTGAATACATCAATTGGAAAATGA

Protein sequence

MRRMNEASRSLKNEKTTLQVTIESQDEYIKDLESGKEYFLELVNDLNTSIGK

Homology

[Close]

BLAST of MELO3C030378 vs. NCBI nr
Match: KAA0055606.1 (girdin-like [Cucumis melo var. makuwa] >TYK24461.1 girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MRRMNEASRSLKNEKTTLQVTIESQDEYIKDLESGKEYFLELVNDLNTSIGK 53
           MRRMN+A+RSLKNEKTTLQ T+ SQDEYIKDLESGKEYFL+LVNDLNTSIGK
Sbjct: 192 MRRMNKANRSLKNEKTTLQATVGSQDEYIKDLESGKEYFLQLVNDLNTSIGK 243

[Close]

BLAST of MELO3C030378 vs. NCBI nr
Match: TYK18656.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 2.7e-15
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MRRMNEASRSLKNEKTTLQVTIESQDEYIKDLESGKEYFLELVNDLNTSIGK 53
           MRRMN+A+RSLKNEKTTLQ T+ S+DEYIKDLE+GKEYFLELVNDLNTSIGK
Sbjct: 177 MRRMNKANRSLKNEKTTLQATVGSEDEYIKDLENGKEYFLELVNDLNTSIGK 228

[Close]

BLAST of MELO3C030378 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 4.6e-15
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MRRMNEASRSLKNEKTTLQVTIESQDEYIKDLESGKEYFLELVNDLNTSIGK 53
           MRRMN+A+R LKNEKTTLQ T+ SQDEYIKDLE+GKEYFLELVNDLNTSIGK
Sbjct: 129 MRRMNKANRRLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSIGK 180

[Close]

BLAST of MELO3C030378 vs. NCBI nr
Match: KAA0066094.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MRRMNEASRSLKNEKTTLQVTIESQDEYIKDLESGKEYFLELVNDLNTSIGK 53
           MRRMN+A+RSLKNEKTTLQ T+ SQDEYIKDLE+GKEYFLE VNDLNTSIGK
Sbjct: 398 MRRMNKANRSLKNEKTTLQATMGSQDEYIKDLENGKEYFLERVNDLNTSIGK 449

[Close]

BLAST of MELO3C030378 vs. NCBI nr
Match: KAA0037780.1 (girdin-like [Cucumis melo var. makuwa] >TYK27303.1 girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MRRMNEASRSLKNEKTTLQVTIESQDEYIKDLESGKEYFLELVNDLNTSIGK 53
           MRRMN+A+RSLKNEKTTLQ T+ SQDEYIKDLE+GKEYFLELVNDLNTSI K
Sbjct: 136 MRRMNKANRSLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSIVK 187

[Close]

BLAST of MELO3C030378 vs. ExPASy TrEMBL
Match: A0A5D3DLE9 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00180 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.9e-16
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MRRMNEASRSLKNEKTTLQVTIESQDEYIKDLESGKEYFLELVNDLNTSIGK 53
           MRRMN+A+RSLKNEKTTLQ T+ SQDEYIKDLESGKEYFL+LVNDLNTSIGK
Sbjct: 192 MRRMNKANRSLKNEKTTLQATVGSQDEYIKDLESGKEYFLQLVNDLNTSIGK 243

[Close]

BLAST of MELO3C030378 vs. ExPASy TrEMBL
Match: A0A5D3D533 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MRRMNEASRSLKNEKTTLQVTIESQDEYIKDLESGKEYFLELVNDLNTSIGK 53
           MRRMN+A+RSLKNEKTTLQ T+ S+DEYIKDLE+GKEYFLELVNDLNTSIGK
Sbjct: 177 MRRMNKANRSLKNEKTTLQATVGSEDEYIKDLENGKEYFLELVNDLNTSIGK 228

[Close]

BLAST of MELO3C030378 vs. ExPASy TrEMBL
Match: A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-15
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MRRMNEASRSLKNEKTTLQVTIESQDEYIKDLESGKEYFLELVNDLNTSIGK 53
           MRRMN+A+R LKNEKTTLQ T+ SQDEYIKDLE+GKEYFLELVNDLNTSIGK
Sbjct: 129 MRRMNKANRRLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSIGK 180

[Close]

BLAST of MELO3C030378 vs. ExPASy TrEMBL
Match: A0A5A7VFL0 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00850 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.0e-15
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MRRMNEASRSLKNEKTTLQVTIESQDEYIKDLESGKEYFLELVNDLNTSIGK 53
           MRRMN+A+RSLKNEKTTLQ T+ SQDEYIKDLE+GKEYFLE VNDLNTSIGK
Sbjct: 398 MRRMNKANRSLKNEKTTLQATMGSQDEYIKDLENGKEYFLERVNDLNTSIGK 449

[Close]

BLAST of MELO3C030378 vs. ExPASy TrEMBL
Match: A0A5D3DUG2 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00160 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.5e-15
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MRRMNEASRSLKNEKTTLQVTIESQDEYIKDLESGKEYFLELVNDLNTSIGK 53
           MRRMN+A+RSLKNEKTTLQ T+ SQDEYIKDLE+GKEYFLELVNDLNTSI K
Sbjct: 136 MRRMNKANRSLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSIVK 187

The following BLAST results are available for this feature:

BLAST of MELO3C030378 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C030378 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055606.1	1.2e-15	88.46	girdin-like [Cucumis melo var. makuwa] >TYK24461.1 girdin-like [Cucumis melo var...	[more]
TYK18656.1	2.7e-15	86.54	girdin-like [Cucumis melo var. makuwa]	[more]
TYK23632.1	4.6e-15	86.54	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0066094.1	1.0e-14	86.54	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0037780.1	1.3e-14	86.54	girdin-like [Cucumis melo var. makuwa] >TYK27303.1 girdin-like [Cucumis melo var...	[more]

BLAST of MELO3C030378 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DLE9	5.9e-16	88.46	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00180 PE...	[more]
A0A5D3D533	1.3e-15	86.54	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE...	[more]
A0A5D3DJ95	2.2e-15	86.54	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P...	[more]
A0A5A7VFL0	5.0e-15	86.54	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00850 PE=...	[more]
A0A5D3DUG2	6.5e-15	86.54	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00160 P...	[more]

BLAST of MELO3C030378 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030378.1	MELO3C030378.1	mRNA