MELO3C030370 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030370
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr04: 926629 .. 927018 (-)
RNA-Seq Expression	MELO3C030370
Synteny	MELO3C030370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTCTCAAACTTTCTTCTATTGTGTTCTTCATTTTATGTATTCATAGTTTAAAATCAGCTGGAGTTCTAACAACTTTTAGTGGTGGTGGTCAATATAATAATCCAAGTAGCCTTGATGATAGTAGGTATGGTTTTAAAGTTAATGAGCATGCAAAATATAATAACGATTACTATTGGGGTTGGGTCGGTGGTCGAGGAAGTACGACCGGTTATGGTTATGGTTATGGTGTTCCCGAATATAAAACAAGAAAATGTAAAAGAGATTCTTATGATAATCATAGAAGCAATTACAAAAGTGAAGGAGAATACAAACATCCTAACTTTCGAAGTGAAAACCAAGGTGACAACTCATCCAGGAGAAGAAGCAGTGTCAAAAGAAGTTAG

mRNA sequence

ATGGCTTCTCTCAAACTTTCTTCTATTGTGTTCTTCATTTTATGTATTCATAGTTTAAAATCAGCTGGAGTTCTAACAACTTTTAGTGGTGGTGGTCAATATAATAATCCAAGTAGCCTTGATGATAGTAGGTATGGTTTTAAAGTTAATGAGCATGCAAAATATAATAACGATTACTATTGGGGTTGGGTCGGTGGTCGAGGAAGTACGACCGGTTATGGTTATGGTTATGGTGTTCCCGAATATAAAACAAGAAAATGTAAAAGAGATTCTTATGATAATCATAGAAGCAATTACAAAAGTGAAGGAGAATACAAACATCCTAACTTTCGAAGTGAAAACCAAGGTGACAACTCATCCAGGAGAAGAAGCAGTGTCAAAAGAAGTTAG

Coding sequence (CDS)

ATGGCTTCTCTCAAACTTTCTTCTATTGTGTTCTTCATTTTATGTATTCATAGTTTAAAATCAGCTGGAGTTCTAACAACTTTTAGTGGTGGTGGTCAATATAATAATCCAAGTAGCCTTGATGATAGTAGGTATGGTTTTAAAGTTAATGAGCATGCAAAATATAATAACGATTACTATTGGGGTTGGGTCGGTGGTCGAGGAAGTACGACCGGTTATGGTTATGGTTATGGTGTTCCCGAATATAAAACAAGAAAATGTAAAAGAGATTCTTATGATAATCATAGAAGCAATTACAAAAGTGAAGGAGAATACAAACATCCTAACTTTCGAAGTGAAAACCAAGGTGACAACTCATCCAGGAGAAGAAGCAGTGTCAAAAGAAGTTAG

Protein sequence

MASLKLSSIVFFILCIHSLKSAGVLTTFSGGGQYNNPSSLDDSRYGFKVNEHAKYNNDYYWGWVGGRGSTTGYGYGYGVPEYKTRKCKRDSYDNHRSNYKSEGEYKHPNFRSENQGDNSSRRRSSVKRS

Homology

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BLAST of MELO3C030370 vs. ExPASy TrEMBL
Match: A0A0A0LK39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902240 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 75/126 (59.52%), Postives = 87/126 (69.05%), Query Frame = 0


Query: 1   MASLKLSSIVFFILCIHSLKSAGVLTTFSGGG-QYNNPSSLDDSRYG-FKVNEHAKYNND 60
           MASLKLSS++FFILCI   K+A VLTTF GGG QY NP SL DSRYG FKVN +AKYNND
Sbjct: 1   MASLKLSSLMFFILCIEISKAARVLTTFGGGGVQYGNPRSLGDSRYGNFKVNGYAKYNND 60

Query: 61  YYWGWVGGRGSTTGYGYGYGVPEYKTRKCKRDSYDNHRSNYKSEGEYKHPNFRSENQGDN 120
           YYWGW+GG+GS++     YG           D YD+HRS+ KS G YK+ N+   N GDN
Sbjct: 61  YYWGWIGGQGSSS-----YG-----------DDYDSHRSSCKSGGGYKYANYGGGNIGDN 110

Query: 121 SSRRRS 125
           SS   S
Sbjct: 121 SSEGSS 110

The following BLAST results are available for this feature:

BLAST of MELO3C030370 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C030370 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C030370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK39	1.0e-24	59.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902240 PE=4 SV=1	[more]

BLAST of MELO3C030370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030370.1	MELO3C030370.1	mRNA