MELO3C030235 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030235
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	CACTA en-spm transposon protein
Location	chr01: 17818100 .. 17820305 (+)
RNA-Seq Expression	MELO3C030235
Synteny	MELO3C030235

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACATATTTATGTAGTTTATATATTTTTATTCTAGCTATGCATTCGTATTTGCTTATTGAATGTTTGTTTTCTATGTCCACAACCATTATGTCATCGTTATATCCGGGCGAAGCCACCGATTAGCCTTAGCCGGACAAGTCAGAGGGCGAAGGGCGAGACCAGGAGCATAGGACCCAGGATCGGAGGACGGACTTCCATCTTGCCAGTTCGTTCTGGGGCACCTATTGGATTGGAGGAGCCCTTGCTCCAGCAGTTCCGGTTTGAGCTCTTGCTTTCATCCTGATTCCAAGGCCTTCTTTCTTTCGTGGGCTGGGTGCATTCGGGTCGGACCACGAAAGGTTTAGGCGCCTCAAGCCTATTGGCATTCGTTAAGACTATCCGTGATAACTAACCCCACTCCGCGGTCTCCTTCTTTCTCCTCAGGGGAATCCTCCCCGTTAAATCAAGGAAATAATTTTATGGAGACGGACGCTATGTTCCTCGAGTTTGAGGACGATTTAGATAACATCGCGGAAGGGTCGTCGTCTGTGGGTAACAATACGAGTGAGTTAAGAATTTTCTTCATTTTAACTTACGGTTATTTCATGTTCTTTTTTCTAACATTATATGTTATTATCGATTTATTAAGTAGGGTCTTCTTCTCAACAACCTATGACTCCGACTCATAGGAGACGTGCAAAGTCTCGACTCTTGGACTTAAAGCACCACGTTGCAATAAATGCACGCATTTCGATGACAATCGCCTCTGGAGCGGAGAAGCCTATTTCTCCACATGTCGTTCGCTTCAGCCAGGCGATAGGCGTGTGCATGCGAAAGACATTTCCTGTCTGCTGCCTTAAGTAGACAGACGTTGGGAGAGAATACATTGAGGTAGTCAAGGGCGACCTCCAGGTAATTAAGTGCACTACACATTTATGATTTCATTTCAAACATATCTAAGTTTAACCAATCTAATGTGTTATGTTTGTAATGTGTAGCGATTGTTTGTACTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGGGCATCATATGCTCACGACCTTTAAAGAGTTCCGGGCCGACTGTCCCAGACATTTCAAAAAGTACAGCGACCAAGAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTCATGAGGATTGACACTTCCACTACGACCACTATATGGGCCGTGCATTCCAGGTATTTTTCATGATTAATTATGATAACAAGTTTTAATATGTATAAGAAATAAACAACATAATTGTTTTTCATGCAGGAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATCATAGTAGAGGGTCCAAGCCGTTTCTACAACGATAGTACGAGCTCGCTGAGAGAAAAGAGGAGTTGATCGATAGTGTGGAGTTGTTCCAGGAAACACACGTTCGAGCTAGGACGTTTGTGTCGCAGGCCGCAAAGGATGCACATGTAAGTTATGCCCTTATTAATTATCCTCTTTCATTATATATTTTTGCGCGTTACCTAACATAGTTTTTAAATTTGTTGCAGAATCAAATGCTGGAACACCAATTTTAGTCTACCCCAAAGGGTAGTCAGCCAATCTCTGAGGATGAGATATGCGATCAGGTGTTGGGTAGAAGACCAGGCTACTCAAAAGGCCTTTGTTGGGGACCCAAGCCGAAGCCCCGCAGGACAACGAGTGTGAGCAGTTCGTTGACATCTTGTACGCAGTCCACACAAAAAGAGATTGAATTATAAGCTAAACTTAATGAAGCTTCGGAACAGATTGAAGTCCAAGATAGAAATCACCAAGCGTTAGCTTCACAAGTGGAACGAATGCAAAAGCTGATAGAAGAATTCACTTGTGCACAATAGGGACCACCACATGATCCCTAGCTTTGCGGTACGTATATATGTCTCCATTATTTTTAAGTTTTTTCAATGATAGTATACAGTGAACATATGGATATATGTACTAAACTTGGTTACTTTTATATTAGGACCAAAGATGTAGAATGACACGTACGCACCTCGTTGGGAGACTTTTTGTTATGCTTTCGTTTTCTTGTATTATGAAAACTACATTTTTTGTATTAAAATTACTAATATTTTGTGAACTTATTCGTATTATTAATTTTAAATATTTTTTAATTTATGTTTGTATTTCTTAATTTATTAATTTATATTGAATTTATTTTAATTTAATCCAAA

mRNA sequence

CACATATTTATGTAGTTTATATATTTTTATTCTAGCTATGCATTCGTATTTGCTTATTGAATGTTTGTTTTCTATGTCCACAACCATTATGTCATCGTTATATCCGGGAAATAATTTTATGGAGACGGACGCTATGTTCCTCGAGTTTGAGGACGATTTAGATAACATCGCGGAAGGGTCGTCGTCTGTGGGTAACAATACGAGGTCTTCTTCTCAACAACCTATGACTCCGACTCATAGGAGACGTGCAAAGTCTCGACTCTTGGACTTAAAGCACCACGTTGCAATAAATGCACGCATTTCGATGACAATCGCCTCTGGAGCGGAGAAGCCTATTTCTCCACATTAGACAGACGTTGGGAGAGAATACATTGAGGTAGTCAAGGGCGACCTCCAGCGATTGTTTGTACTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGGGCATCATATGCTCACGACCTTTAAAGAGTTCCGGGCCGACTGTCCCAGACATTTCAAAAAGTACAGCGACCAAGAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTCATGAGGATTGACACTTCCACTACGACCACTATATGGGCCGTGCATTCCAGTACGAGCTCGCTGAGAGAAAAGAGGAGTTGATCGATAGTGTGGAGTTGTTCCAGGAAACACACGTTCGAGCTAGGACGTTTGTGTCGCAGGCCGCAAAGGATGCACATGACCAAAGATGTAGAATGACACGTACGCACCTCGTTGGGAGACTTTTTGTTATGCTTTCGTTTTCTTGTATTATGAAAACTACATTTTTTGTATTAAAATTACTAATATTTTGTGAACTTATTCGTATTATTAATTTTAAATATTTTTTAATTTATGTTTGTATTTCTTAATTTATTAATTTATATTGAATTTATTTTAATTTAATCCAAA

Coding sequence (CDS)

ATGCATTCGTATTTGCTTATTGAATGTTTGTTTTCTATGTCCACAACCATTATGTCATCGTTATATCCGGGAAATAATTTTATGGAGACGGACGCTATGTTCCTCGAGTTTGAGGACGATTTAGATAACATCGCGGAAGGGTCGTCGTCTGTGGGTAACAATACGAGGTCTTCTTCTCAACAACCTATGACTCCGACTCATAGGAGACGTGCAAAGTCTCGACTCTTGGACTTAAAGCACCACGTTGCAATAAATGCACGCATTTCGATGACAATCGCCTCTGGAGCGGAGAAGCCTATTTCTCCACATTAG

Protein sequence

MHSYLLIECLFSMSTTIMSSLYPGNNFMETDAMFLEFEDDLDNIAEGSSSVGNNTRSSSQQPMTPTHRRRAKSRLLDLKHHVAINARISMTIASGAEKPISPH

Homology

[Close]

BLAST of MELO3C030235 vs. NCBI nr
Match: KAA0033533.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYJ95656.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 1.0e-29
Identity = 80/104 (76.92%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MHSYLLIECLFSMSTTIMSSLYPGNNFMETDAMFLEFEDDLDNIAEGSSSVGNNTR-SSS 60
           M SYLLIECLFSMST IMSS YP  NFM+TDAMFLEFEDDLDNI  G SSVG++T  SSS
Sbjct: 108 MCSYLLIECLFSMSTAIMSSSYP-RNFMKTDAMFLEFEDDLDNITGGLSSVGDDTAGSSS 167

Query: 61  QQPMTPTHRRRAKSRLLDLKHHVAINARISMTIASGAEKPISPH 104
           QQP TPT RRRA SRLL+L+  VAIN RI MTIA G EKPISPH
Sbjct: 168 QQPATPTPRRRAHSRLLELERQVAINGRIPMTIAPGVEKPISPH 210

[Close]

BLAST of MELO3C030235 vs. NCBI nr
Match: TYK10969.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-26
Identity = 66/86 (76.74%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 18  MSSLYPGNNFMETDAMFLEFEDDLDNIAEGSSSVGNNTRSSSQQPMTPTHRRRAKSRLLD 77
           MSS YP NNFME D MFLEFEDDLDNI  GSSS+G+NT SSSQQP+TPT +RRA+SRLL+
Sbjct: 1   MSSSYPRNNFMEMDVMFLEFEDDLDNIVGGSSSMGDNTESSSQQPVTPTPKRRAQSRLLE 60

Query: 78  LKHHVAINARISMTIASGAEKPISPH 104
           L+ HVAIN RI MTIA GAEKPI PH
Sbjct: 61  LERHVAINGRIPMTIAPGAEKPIFPH 86

[Close]

BLAST of MELO3C030235 vs. NCBI nr
Match: TYK09800.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 2.3e-26
Identity = 68/93 (73.12%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 11  FSMSTTIMSSLYPGNNFMETDAMFLEFEDDLDNIAEGSSSVGNNTRSSSQQPMTPTHRRR 70
           +S    IMSS YP NNFMETDA FLEFEDDLDN+A GSSS+GNN RSSSQ P TPT RRR
Sbjct: 48  YSDKPHIMSSSYPSNNFMETDATFLEFEDDLDNLAGGSSSMGNNARSSSQPPATPTPRRR 107

Query: 71  AKSRLLDLKHHVAINARISMTIASGAEKPISPH 104
           A+S+LL+L+HHV IN  I MTIA  AEKPISPH
Sbjct: 108 AQSQLLELEHHVTINGCILMTIALEAEKPISPH 140

[Close]

BLAST of MELO3C030235 vs. NCBI nr
Match: TYK19073.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-25
Identity = 69/87 (79.31%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 17  IMSSLYPGNNFMETDAMFLEFEDDLDNIAEGSSSVGNNTRSSSQQPMTPTHRRRAKSRLL 76
           IMSS YP NNFMETDAMFLEFEDDLDNIA GSSSVG+N  SSSQQP T T +R A+S+LL
Sbjct: 152 IMSSSYPRNNFMETDAMFLEFEDDLDNIAGGSSSVGDNAGSSSQQPATLTPKRCAQSQLL 211

Query: 77  DLKHHVAINARISMTIASGAEKPISPH 104
           +L+ HVAINARI MTIAS AEKPISPH
Sbjct: 212 ELECHVAINARIPMTIASRAEKPISPH 238

[Close]

BLAST of MELO3C030235 vs. NCBI nr
Match: KAA0038961.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-25
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 13  MST--TIMSSLYPGNNFMETDAMFLEFEDDLDNIAEGSSSVGNNTR-SSSQQPMTPTHRR 72
           MST  TIMSS Y  NNFMETDAMFLEFE+DLDNIA GSSS+G+NT  SSSQQP TPT RR
Sbjct: 100 MSTLYTIMSSSYQRNNFMETDAMFLEFENDLDNIAGGSSSLGDNTAGSSSQQPATPTPRR 159

Query: 73  RAKSRLLDLKHHVAINARISMTIASGAEKPISPH 104
           RA+SRLL+L+ HVAIN  I MTIA GA+KPISPH
Sbjct: 160 RAQSRLLELERHVAINGCIPMTIAHGAKKPISPH 193

[Close]

BLAST of MELO3C030235 vs. ExPASy TrEMBL
Match: A0A5A7SSV3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00850 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.8e-30
Identity = 80/104 (76.92%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MHSYLLIECLFSMSTTIMSSLYPGNNFMETDAMFLEFEDDLDNIAEGSSSVGNNTR-SSS 60
           M SYLLIECLFSMST IMSS YP  NFM+TDAMFLEFEDDLDNI  G SSVG++T  SSS
Sbjct: 108 MCSYLLIECLFSMSTAIMSSSYP-RNFMKTDAMFLEFEDDLDNITGGLSSVGDDTAGSSS 167

Query: 61  QQPMTPTHRRRAKSRLLDLKHHVAINARISMTIASGAEKPISPH 104
           QQP TPT RRRA SRLL+L+  VAIN RI MTIA G EKPISPH
Sbjct: 168 QQPATPTPRRRAHSRLLELERQVAINGRIPMTIAPGVEKPISPH 210

[Close]

BLAST of MELO3C030235 vs. ExPASy TrEMBL
Match: A0A5D3CL57 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00570 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 8.6e-27
Identity = 66/86 (76.74%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 18  MSSLYPGNNFMETDAMFLEFEDDLDNIAEGSSSVGNNTRSSSQQPMTPTHRRRAKSRLLD 77
           MSS YP NNFME D MFLEFEDDLDNI  GSSS+G+NT SSSQQP+TPT +RRA+SRLL+
Sbjct: 1   MSSSYPRNNFMEMDVMFLEFEDDLDNIVGGSSSMGDNTESSSQQPVTPTPKRRAQSRLLE 60

Query: 78  LKHHVAINARISMTIASGAEKPISPH 104
           L+ HVAIN RI MTIA GAEKPI PH
Sbjct: 61  LERHVAINGRIPMTIAPGAEKPIFPH 86

[Close]

BLAST of MELO3C030235 vs. ExPASy TrEMBL
Match: A0A5D3CEM8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00970 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.1e-26
Identity = 68/93 (73.12%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 11  FSMSTTIMSSLYPGNNFMETDAMFLEFEDDLDNIAEGSSSVGNNTRSSSQQPMTPTHRRR 70
           +S    IMSS YP NNFMETDA FLEFEDDLDN+A GSSS+GNN RSSSQ P TPT RRR
Sbjct: 48  YSDKPHIMSSSYPSNNFMETDATFLEFEDDLDNLAGGSSSMGNNARSSSQPPATPTPRRR 107

Query: 71  AKSRLLDLKHHVAINARISMTIASGAEKPISPH 104
           A+S+LL+L+HHV IN  I MTIA  AEKPISPH
Sbjct: 108 AQSQLLELEHHVTINGCILMTIALEAEKPISPH 140

[Close]

BLAST of MELO3C030235 vs. ExPASy TrEMBL
Match: A0A5D3D6F3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold529G00370 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.5e-26
Identity = 69/87 (79.31%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 17  IMSSLYPGNNFMETDAMFLEFEDDLDNIAEGSSSVGNNTRSSSQQPMTPTHRRRAKSRLL 76
           IMSS YP NNFMETDAMFLEFEDDLDNIA GSSSVG+N  SSSQQP T T +R A+S+LL
Sbjct: 152 IMSSSYPRNNFMETDAMFLEFEDDLDNIAGGSSSVGDNAGSSSQQPATLTPKRCAQSQLL 211

Query: 77  DLKHHVAINARISMTIASGAEKPISPH 104
           +L+ HVAINARI MTIAS AEKPISPH
Sbjct: 212 ELECHVAINARIPMTIASRAEKPISPH 238

[Close]

BLAST of MELO3C030235 vs. ExPASy TrEMBL
Match: A0A5A7TBG7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00370 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.2e-26
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 13  MST--TIMSSLYPGNNFMETDAMFLEFEDDLDNIAEGSSSVGNNTR-SSSQQPMTPTHRR 72
           MST  TIMSS Y  NNFMETDAMFLEFE+DLDNIA GSSS+G+NT  SSSQQP TPT RR
Sbjct: 100 MSTLYTIMSSSYQRNNFMETDAMFLEFENDLDNIAGGSSSLGDNTAGSSSQQPATPTPRR 159

Query: 73  RAKSRLLDLKHHVAINARISMTIASGAEKPISPH 104
           RA+SRLL+L+ HVAIN  I MTIA GA+KPISPH
Sbjct: 160 RAQSRLLELERHVAINGCIPMTIAHGAKKPISPH 193

The following BLAST results are available for this feature:

BLAST of MELO3C030235 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033533.1	1.0e-29	76.92	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYJ95656.1 CACTA en-...	[more]
TYK10969.1	1.8e-26	76.74	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK09800.1	2.3e-26	73.12	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK19073.1	1.1e-25	79.31	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0038961.1	1.5e-25	76.60	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C030235 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030235 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSV3	4.8e-30	76.92	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3CL57	8.6e-27	76.74	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3CEM8	1.1e-26	73.12	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3D6F3	5.5e-26	79.31	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7TBG7	7.2e-26	76.60	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of MELO3C030235 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030235.1	MELO3C030235.1	mRNA