MELO3C029960 (gene) Melon (DHL92) v4

Overview
NameMELO3C029960
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGATA zinc finger domain-containing protein 10-like isoform X2
Locationchr03: 13797071 .. 13797342 (-)
RNA-Seq ExpressionMELO3C029960
SyntenyMELO3C029960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGATGATGTCAACATTTGGAGCAAGATATTGTGATTCTGAGGTCGACCGGTACAAAATATTATGATTCAAGGATCGGTCCATCATCTTCATATAAATGGATGTCGGTCCATCAACTTCTTATATGCATGGACACAGACGTGACCGTGGAGAACATAACGAATATTTGTACTATGAAGCACTTGCAAAGGTATCAGATCGACAAGAGTGCCATAACAACACAGAGTTCAAAGTTAAAGGTGACAACCAACTCAAAATCGACAATGTCCA

mRNA sequence

ATGATGATGATGTCAACATTTGGAGCAAGATATTGTGATTCTGAGGTCGACCGGTACAAAATATTATGATTCAAGGATCGGTCCATCATCTTCATATAAATGGATGTCGGTCCATCAACTTCTTATATGCATGGACACAGACGTGACCGTGGAGAACATAACGAATATTTGTACTATGAAGCACTTGCAAAGGTATCAGATCGACAAGAGTGCCATAACAACACAGAGTTCAAAGTTAAAGGTGACAACCAACTCAAAATCGACAATGTCCA

Coding sequence (CDS)

ATGGATGTCGGTCCATCAACTTCTTATATGCATGGACACAGACGTGACCGTGGAGAACATAACGAATATTTGTACTATGAAGCACTTGCAAAGGTATCAGATCGACAAGAGTGCCATAACAACACAGAGTTCAAAGTTAAAGGTGACAACCAACTCAAAATCGACAATGTC

Protein sequence

MDVGPSTSYMHGHRRDRGEHNEYLYYEALAKVSDRQECHNNTEFKVKGDNQLKIDNV
Homology
BLAST of MELO3C029960 vs. NCBI nr
Match: KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 9.2e-09
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 0

Query: 1   MDVGPSTSYMHGHRRDRGEHNEYLYYEALAKVSDRQECHNNTE 44
           MDVGPSTSYMHGHR D GEHNEYLY+EA  +VSDRQE     E
Sbjct: 148 MDVGPSTSYMHGHRHDYGEHNEYLYHEAPTEVSDRQEYQQEPE 190

BLAST of MELO3C029960 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-07
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 1   MDVGPSTSYMHGHRRDRGEHNEYLYYEALAKVSDRQECHNNTE 44
           +DV PSTSYMHGHRR  GEHNEYLY+EA A VSDRQE     E
Sbjct: 139 VDVSPSTSYMHGHRRGYGEHNEYLYHEAPADVSDRQEYQQEPE 181

BLAST of MELO3C029960 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 31/43 (72.09%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 1   MDVGPSTSYMHGHRRDRGEHNEYLYYEALAKVSDRQECHNNTE 44
           MDVGPS SYMHGH R  GEHNEYLY+EA A VSDRQE     E
Sbjct: 80  MDVGPSNSYMHGHGRGYGEHNEYLYHEAPADVSDRQEYQQEPE 122

BLAST of MELO3C029960 vs. NCBI nr
Match: KAA0060605.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK02266.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 3.0e-07
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 1  MDVGPSTSYMHGHRRDRGEHNEYLYYEALAKVSDRQECHNNTE 44
          MDVGP TSYMHGH RD GEHNEYLY+EAL +V +RQE     E
Sbjct: 32 MDVGPLTSYMHGHGRDFGEHNEYLYHEALIEVPNRQEYQQELE 74

BLAST of MELO3C029960 vs. NCBI nr
Match: KAA0054357.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK12395.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 5.0e-07
Identity = 30/43 (69.77%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 1   MDVGPSTSYMHGHRRDRGEHNEYLYYEALAKVSDRQECHNNTE 44
           MDVGPS SYMHGH R  GEHN+YLY+EA A VSDRQE     E
Sbjct: 219 MDVGPSNSYMHGHGRGYGEHNQYLYHEAPADVSDRQEYQQEPE 261

BLAST of MELO3C029960 vs. ExPASy TrEMBL
Match: A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.5e-09
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 0

Query: 1   MDVGPSTSYMHGHRRDRGEHNEYLYYEALAKVSDRQECHNNTE 44
           MDVGPSTSYMHGHR D GEHNEYLY+EA  +VSDRQE     E
Sbjct: 148 MDVGPSTSYMHGHRHDYGEHNEYLYHEAPTEVSDRQEYQQEPE 190

BLAST of MELO3C029960 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.4e-08
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 1   MDVGPSTSYMHGHRRDRGEHNEYLYYEALAKVSDRQECHNNTE 44
           +DV PSTSYMHGHRR  GEHNEYLY+EA A VSDRQE     E
Sbjct: 139 VDVSPSTSYMHGHRRGYGEHNEYLYHEAPADVSDRQEYQQEPE 181

BLAST of MELO3C029960 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 31/43 (72.09%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 1   MDVGPSTSYMHGHRRDRGEHNEYLYYEALAKVSDRQECHNNTE 44
           MDVGPS SYMHGH R  GEHNEYLY+EA A VSDRQE     E
Sbjct: 80  MDVGPSNSYMHGHGRGYGEHNEYLYHEAPADVSDRQEYQQEPE 122

BLAST of MELO3C029960 vs. ExPASy TrEMBL
Match: A0A5A7V414 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00670 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 1  MDVGPSTSYMHGHRRDRGEHNEYLYYEALAKVSDRQECHNNTE 44
          MDVGP TSYMHGH RD GEHNEYLY+EAL +V +RQE     E
Sbjct: 32 MDVGPLTSYMHGHGRDFGEHNEYLYHEALIEVPNRQEYQQELE 74

BLAST of MELO3C029960 vs. ExPASy TrEMBL
Match: A0A5A7UIF6 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001780 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 30/43 (69.77%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 1   MDVGPSTSYMHGHRRDRGEHNEYLYYEALAKVSDRQECHNNTE 44
           MDVGPS SYMHGH R  GEHN+YLY+EA A VSDRQE     E
Sbjct: 219 MDVGPSNSYMHGHGRGYGEHNQYLYHEAPADVSDRQEYQQEPE 261

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0025972.19.2e-0974.42mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK01176.11.3e-0772.09GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0049532.12.3e-0772.09GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0060605.13.0e-0769.77GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0054357.15.0e-0769.77serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SLF84.5e-0974.42Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3BSG86.4e-0872.09GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5D3CXX31.1e-0772.09GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7V4141.4e-0769.77GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7UIF62.4e-0769.77Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029960.1MELO3C029960.1mRNA