MELO3C029898 (gene) Melon (DHL92) v4

Overview


Name	MELO3C029898
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr03: 8803688 .. 8805044 (-)
RNA-Seq Expression	MELO3C029898
Synteny	MELO3C029898

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCAAACAAGGTATTCATGAAATTGTTGAACCACTAATACTGTTACAAATATGGGCTTAGGAATGATTCCCAATAGTGGCTCCATAACTCCTACATGTCAATGCTCATAAATTACACAGTCGAGCTTATGGTTCAAGGTAAGCTGTTTCAATTTAATTTAGATTAATAGTAACTTTTTATATGTAATTCATTTAAAATCTATAATATTAGTTGAACAATACAGATTGAGAGATCAATTTTGTGTGACCAGATCGGCTATACATGTAGTCTCTTAGTATAGGTAGATGTTTGATCTTCTTCAACCTAGTCAGGTACGTCGTGCTGAACTAGAATTTTAAGTTCCATATATTTTTTTAATATTATTTGTTTTATACGTTATGTTTCAGATTATCTAAGAACCATACAAAGTTGTCATAGATAGCTTGCCACATTTTTATACAAACGGTCACGACATATGACGGACGATTAGTCCTCTCATATGTTTCTACATTGGTGAGTGGCATCATCCTGATAGAGTACTTAGATAGTTTGGTATTCAACAAGTTGTTCCACATGACTGTAATACTAAACCACTATTGCACAACATTGACCTGAGAACTGCTGATTGGTCAAATAGAGTTGCTCATTTAATGATGCAATGGGTAAATCGTAGAAGGTTTACTGCTATGTGACCTCCTATTGAGCAATTTGATATGAATGTAACTTAAGAATACATCCATTGATACAAAAACATTACCAGACTCTATATCACTCAATCGGGAGCTGTTGTGGGTCATCTGGTATACATTTAAATATTGTATAATTATTTTTAGTGCAAATTTATTTTCAATGCTTTCTAATTCATTTTAATATTTTACAGACATTGAACAATATTAGACTTCAGAATGTTGCAGATGATCAACAACAAGTCCTAAATATATGTAACGATAACGAGCAGTACATAGAGAACATTCACTATATGTACGATGTCCCTATTGTACCTGCTCTAGTTTAGAGGAGACGTGCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACTAACACATGGAAGAAGTGTCTCCTATGACACGGACACAAAACAAGCATGATTACGTTAGTCCAGTAATGATGAAGCCAGCATTTGGAACGATATATTATGATTTAGGAGTCGGTCAATCATCAATCTTTAGAACAAGATATTACAATTCAGAGGCAGGTCCATCATCATCAAACTTTGGGCAACAATACTATGATTTAGGAAGTTATCAGCGTCTTCATACATGCATGGTCACGGGCGTGGTTGTGGAAAACATAATGAATATTTGAACTACGAAGTGCCTATAGCGGTACCTGAGCAATCAGATGAGCAATAG

mRNA sequence

ATCCAAACAAGGTATTCATGAAATTGTTGAACCACTAATACTGTTACAAATATGGGCTTAGGAATGATTCCCAATAGTGGCTCCATAACTCCTACATGTCAATGCTCATAAATTACACAGTCGAGCTTATGGTTCAAGATTGAGAGATCAATTTTGTGTGACCAGATCGGCTATACATGTAGTCTCTTAGTATAGGTAGATGTTTGATCTTCTTCAACCTAGTCAGGTACGTCGTGCTGAACTAGAATTTTAAGTTCCATATATTTTTTTAATATTATTTGTTTTATACGTTATGTTTCAGATTATCTAAGAACCATACAAAGTTGTCATAGATAGCTTGCCACATTTTTATACAAACGGTCACGACATATGACGGACGATTAGTCCTCTCATATGTTTCTACATTGGTGAGTGGCATCATCCTGATAGAGTACTTAGATAGTTTGGTATTCAACAAGTTGTTCCACATGACTGTAATACTAAACCACTATTGCACAACATTGACCTGAGAACTGCTGATTGGTCAAATAGAGTTGCTCATTTAATGATGCAATGGGTAAATCGTAGAAGGTTTACTGCTATGTGACCTCCTATTGAGCAATTTGATATGAATGTAACTTAAGAATACATCCATTGATACAAAAACATTACCAGACTCTATATCACTCAATCGGGAGCTGTTGTGGGTCATCTGACATTGAACAATATTAGACTTCAGAATGTTGCAGATGATCAACAACAAGTCCTAAATATATGTAACGATAACGAGCAGTACATAGAGAACATTCACTATATGTACGATGTCCCTATTGTACCTGCTCTAGTTTAGAGGAGACGTGCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACTAACACATGGAAGAAGTGTCTCCTATGACACGGACACAAAACAAGCATGATTACGTTAGTCCAGTAATGATGAAGCCAGCATTTGGAACGATATATTATGATTTAGGAGTCGGTCAATCATCAATCTTTAGAACAAGATATTACAATTCAGAGGCAGCGTCTTCATACATGCATGGTCACGGGCGTGGTTGTGGAAAACATAATGAATATTTGAACTACGAAGTGCCTATAGCGGTACCTGAGCAATCAGATGAGCAATAG

Coding sequence (CDS)

ATGGAAGAAGTGTCTCCTATGACACGGACACAAAACAAGCATGATTACGTTAGTCCAGTAATGATGAAGCCAGCATTTGGAACGATATATTATGATTTAGGAGTCGGTCAATCATCAATCTTTAGAACAAGATATTACAATTCAGAGGCAGCGTCTTCATACATGCATGGTCACGGGCGTGGTTGTGGAAAACATAATGAATATTTGAACTACGAAGTGCCTATAGCGGTACCTGAGCAATCAGATGAGCAATAG

Protein sequence

MEEVSPMTRTQNKHDYVSPVMMKPAFGTIYYDLGVGQSSIFRTRYYNSEAASSYMHGHGRGCGKHNEYLNYEVPIAVPEQSDEQ

Homology

[Close]

BLAST of MELO3C029898 vs. NCBI nr
Match: KAA0036767.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 1.8e-24
Identity = 63/100 (63.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 2   EEVSPMTRTQNKHDYVSPVMMKPAFGTIYYDLGVGQSSIFRTRYYNSEA----------- 61
           +EV PMT+TQ++H+YVSPVMM P FGT YYD GVGQSS F   YYNS+A           
Sbjct: 366 KEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQY 425

Query: 62  -------ASSYMHGHGRGCGKHNEYLNYEVPIAVPEQSDE 84
                  +SSYMHGHGRG GKHNEYL YEVP AVPEQSDE
Sbjct: 426 YDLGSDPSSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDE 465

[Close]

BLAST of MELO3C029898 vs. NCBI nr
Match: KAA0055624.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 1.8e-24
Identity = 63/100 (63.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 2   EEVSPMTRTQNKHDYVSPVMMKPAFGTIYYDLGVGQSSIFRTRYYNSEA----------- 61
           EEV PMT+T+++H+YVSPVMM P FGT YYD GVGQSS F   YYNSEA           
Sbjct: 636 EEVPPMTQTKSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQY 695

Query: 62  -------ASSYMHGHGRGCGKHNEYLNYEVPIAVPEQSDE 84
                  +SSYMHGHGRG G+HNEYL YEVP AVPEQSDE
Sbjct: 696 YDLGSDPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSDE 735

[Close]

BLAST of MELO3C029898 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 1.8e-24
Identity = 63/100 (63.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 2    EEVSPMTRTQNKHDYVSPVMMKPAFGTIYYDLGVGQSSIFRTRYYNSEA----------- 61
            +EV PMT+TQ++H+YVSPVMM P FGT YYD GVGQSS F   YYNS+A           
Sbjct: 1127 KEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQY 1186

Query: 62   -------ASSYMHGHGRGCGKHNEYLNYEVPIAVPEQSDE 84
                   +SSYMHGHGRG GKHNEYL YEVP AVPEQSDE
Sbjct: 1187 YDLGSDPSSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDE 1226

[Close]

BLAST of MELO3C029898 vs. NCBI nr
Match: KAA0050408.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYJ97999.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-24
Identity = 64/102 (62.75%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 1   MEEVSPMTRTQNKHDYVSPVMMKPAFGTIYYDLGVGQSSIFRTRYYNSEA---------- 60
           +EE+  MT+TQ++H YVSPVMM  AFGT YYDLGVGQSS F T YYNSEA          
Sbjct: 177 VEEMPLMTQTQSEHSYVSPVMMMSAFGTTYYDLGVGQSSDFGTGYYNSEASPSSSNFGQQ 236

Query: 61  --------ASSYMHGHGRGCGKHNEYLNYEVPIAVPEQSDEQ 85
                   +SSYMHGHGRG G+HNEYL Y+VP AVPEQSDEQ
Sbjct: 237 YYDLGSDPSSSYMHGHGRGHGEHNEYLYYKVPAAVPEQSDEQ 278

[Close]

BLAST of MELO3C029898 vs. NCBI nr
Match: KAA0034013.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-24
Identity = 63/100 (63.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 2   EEVSPMTRTQNKHDYVSPVMMKPAFGTIYYDLGVGQSSIFRTRYYNSEA----------- 61
           EEV PMT+TQ++H+YVSPVMM P FGT YYD GVGQSS F   YYNSEA           
Sbjct: 628 EEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQY 687

Query: 62  -------ASSYMHGHGRGCGKHNEYLNYEVPIAVPEQSDE 84
                  +SSYMHGHGRG G+HNEYL YEVP AVPEQS+E
Sbjct: 688 YDLGSDPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNE 727

[Close]

BLAST of MELO3C029898 vs. ExPASy TrEMBL
Match: A0A5A7UKC7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G001140 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.5e-25
Identity = 63/100 (63.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 2   EEVSPMTRTQNKHDYVSPVMMKPAFGTIYYDLGVGQSSIFRTRYYNSEA----------- 61
           EEV PMT+T+++H+YVSPVMM P FGT YYD GVGQSS F   YYNSEA           
Sbjct: 636 EEVPPMTQTKSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQY 695

Query: 62  -------ASSYMHGHGRGCGKHNEYLNYEVPIAVPEQSDE 84
                  +SSYMHGHGRG G+HNEYL YEVP AVPEQSDE
Sbjct: 696 YDLGSDPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSDE 735

[Close]

BLAST of MELO3C029898 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.5e-25
Identity = 63/100 (63.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 2    EEVSPMTRTQNKHDYVSPVMMKPAFGTIYYDLGVGQSSIFRTRYYNSEA----------- 61
            +EV PMT+TQ++H+YVSPVMM P FGT YYD GVGQSS F   YYNS+A           
Sbjct: 1127 KEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQY 1186

Query: 62   -------ASSYMHGHGRGCGKHNEYLNYEVPIAVPEQSDE 84
                   +SSYMHGHGRG GKHNEYL YEVP AVPEQSDE
Sbjct: 1187 YDLGSDPSSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDE 1226

[Close]

BLAST of MELO3C029898 vs. ExPASy TrEMBL
Match: A0A5A7T598 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00500 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.5e-25
Identity = 63/100 (63.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 2   EEVSPMTRTQNKHDYVSPVMMKPAFGTIYYDLGVGQSSIFRTRYYNSEA----------- 61
           +EV PMT+TQ++H+YVSPVMM P FGT YYD GVGQSS F   YYNS+A           
Sbjct: 366 KEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQY 425

Query: 62  -------ASSYMHGHGRGCGKHNEYLNYEVPIAVPEQSDE 84
                  +SSYMHGHGRG GKHNEYL YEVP AVPEQSDE
Sbjct: 426 YDLGSDPSSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDE 465

[Close]

BLAST of MELO3C029898 vs. ExPASy TrEMBL
Match: A0A5A7U558 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00220 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 64/102 (62.75%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 1   MEEVSPMTRTQNKHDYVSPVMMKPAFGTIYYDLGVGQSSIFRTRYYNSEA---------- 60
           +EE+  MT+TQ++H YVSPVMM  AFGT YYDLGVGQSS F T YYNSEA          
Sbjct: 177 VEEMPLMTQTQSEHSYVSPVMMMSAFGTTYYDLGVGQSSDFGTGYYNSEASPSSSNFGQQ 236

Query: 61  --------ASSYMHGHGRGCGKHNEYLNYEVPIAVPEQSDEQ 85
                   +SSYMHGHGRG G+HNEYL Y+VP AVPEQSDEQ
Sbjct: 237 YYDLGSDPSSSYMHGHGRGHGEHNEYLYYKVPAAVPEQSDEQ 278

[Close]

BLAST of MELO3C029898 vs. ExPASy TrEMBL
Match: A0A5A7SU33 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00810 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 63/100 (63.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 2   EEVSPMTRTQNKHDYVSPVMMKPAFGTIYYDLGVGQSSIFRTRYYNSEA----------- 61
           EEV PMT+TQ++H+YVSPVMM P FGT YYD GVGQSS F   YYNSEA           
Sbjct: 628 EEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQY 687

Query: 62  -------ASSYMHGHGRGCGKHNEYLNYEVPIAVPEQSDE 84
                  +SSYMHGHGRG G+HNEYL YEVP AVPEQS+E
Sbjct: 688 YDLGSDPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNE 727

The following BLAST results are available for this feature:

BLAST of MELO3C029898 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036767.1	1.8e-24	63.00	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0055624.1	1.8e-24	63.00	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYJ95836.1	1.8e-24	63.00	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0050408.1	2.3e-24	62.75	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0034013.1	2.3e-24	63.00	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]

BLAST of MELO3C029898 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C029898 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKC7	8.5e-25	63.00	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3BAB0	8.5e-25	63.00	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7T598	8.5e-25	63.00	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7U558	1.1e-24	62.75	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7SU33	1.1e-24	63.00	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]

BLAST of MELO3C029898 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029898.1	MELO3C029898.1	mRNA