MELO3C029832 (gene) Melon (DHL92) v4

Overview
NameMELO3C029832
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPre-mRNA-splicing factor SPF27-like protein
Locationchr01: 17205310 .. 17205575 (+)
RNA-Seq ExpressionMELO3C029832
SyntenyMELO3C029832
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAATGTTGATTGTTATCAGAATGCAAAAAATAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTGAACCGTGAAAGAAAATTCCATCAAGTAAATAGCATCCTCGTAATTCATACTACAATAATAGAGTAGAGGTTAATTAGCATTTTGTATTTAATCTAGTATTACAGGTAGAAGCTGAGCACAAGGAGGAGGAAGAATCTGAACAAGAATCTGGGGATGAATTTGATTATCAGGGAGATAAACCTAAAATTTGTATTTAGTGA

mRNA sequence

ACAATGTTGATTGTTATCAGAATGCAAAAAATAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTGAACCGTGAAAGAAAATTCCATCAAGTAAATAGCATCCTCGTAATTCATACTACAATAATAGAGTAGAGGTTAATTAGCATTTTGTATTTAATCTAGTATTACAGGTAGAAGCTGAGCACAAGGAGGAGGAAGAATCTGAACAAGAATCTGGGGATGAATTTGATTATCAGGGAGATAAACCTAAAATTTGTATTTAGTGA

Coding sequence (CDS)

ATGTTGATTGTTATCAGAATGCAAAAAATAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTGAACCGTGAAAGAAAATTCCATCAAGTAAATAGCATCCTCGTAATTCATACTACAATAATAGAGTAG

Protein sequence

MLIVIRMQKIAQEQNEKIEKVNRERKFHQVNSILVIHTTIIE
Homology
BLAST of MELO3C029832 vs. NCBI nr
Match: TYJ99022.1 (pre-mRNA-splicing factor SPF27-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 3.5e-05
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 0

Query: 3   IVIRMQKIAQEQNEKIEKVNRERKFHQVNSILVIHTTIIE 43
           ++ RMQK+AQEQNEKIEKVNRERKFHQV+SI VIH   ++
Sbjct: 167 LLSRMQKLAQEQNEKIEKVNRERKFHQVSSIPVIHVNSLK 206

BLAST of MELO3C029832 vs. ExPASy Swiss-Prot
Match: Q949S9 (Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana OX=3702 GN=MOS4 PE=1 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 5.2e-04
Identity = 20/28 (71.43%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 2   LIVIRMQKIAQEQNEKIEKVNRERKFHQ 30
           + + RMQ++AQEQNE+IEKVNRERK+HQ
Sbjct: 164 VFLTRMQRLAQEQNEEIEKVNRERKYHQ 191

BLAST of MELO3C029832 vs. ExPASy TrEMBL
Match: A0A5D3BGY3 (Pre-mRNA-splicing factor SPF27-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002260 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-05
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 0

Query: 3   IVIRMQKIAQEQNEKIEKVNRERKFHQVNSILVIHTTIIE 43
           ++ RMQK+AQEQNEKIEKVNRERKFHQV+SI VIH   ++
Sbjct: 167 LLSRMQKLAQEQNEKIEKVNRERKFHQVSSIPVIHVNSLK 206

BLAST of MELO3C029832 vs. ExPASy TrEMBL
Match: A0A6J1KLZ4 (pre-mRNA-splicing factor SPF27 homolog OS=Cucurbita maxima OX=3661 GN=LOC111495390 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.2e-04
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 3   IVIRMQKIAQEQNEKIEKVNRERKFHQVNSILVIH 38
           ++ RMQK+AQEQNEKIEKVNRERKFHQ N+   +H
Sbjct: 167 LLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELH 201

BLAST of MELO3C029832 vs. ExPASy TrEMBL
Match: A0A6J1EDE4 (pre-mRNA-splicing factor SPF27 homolog OS=Cucurbita moschata OX=3662 GN=LOC111431514 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.2e-04
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 3   IVIRMQKIAQEQNEKIEKVNRERKFHQVNSILVIH 38
           ++ RMQK+AQEQNEKIEKVNRERKFHQ N+   +H
Sbjct: 167 LLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELH 201

BLAST of MELO3C029832 vs. ExPASy TrEMBL
Match: A0A0A0LQG2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042680 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.2e-04
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 3   IVIRMQKIAQEQNEKIEKVNRERKFHQVNSILVIH 38
           ++ RMQK+AQEQNEKIEKVNRERKFHQ N+   +H
Sbjct: 167 LLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELH 201

BLAST of MELO3C029832 vs. ExPASy TrEMBL
Match: A0A6J1CB04 (pre-mRNA-splicing factor SPF27 homolog OS=Momordica charantia OX=3673 GN=LOC111009059 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.2e-04
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 3   IVIRMQKIAQEQNEKIEKVNRERKFHQVNSILVIH 38
           ++ RMQK+AQEQNEKIEKVNRERKFHQ N+   +H
Sbjct: 167 LLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELH 201

BLAST of MELO3C029832 vs. TAIR 10
Match: AT3G18165.1 (modifier of snc1,4 )

HSP 1 Score: 43.9 bits (102), Expect = 3.7e-05
Identity = 20/28 (71.43%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 2   LIVIRMQKIAQEQNEKIEKVNRERKFHQ 30
           + + RMQ++AQEQNE+IEKVNRERK+HQ
Sbjct: 164 VFLTRMQRLAQEQNEEIEKVNRERKYHQ 191

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYJ99022.13.5e-0572.50pre-mRNA-splicing factor SPF27-like protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Q949S95.2e-0471.43Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana OX=3702 GN=MOS4 P... [more]
Match NameE-valueIdentityDescription
A0A5D3BGY31.7e-0572.50Pre-mRNA-splicing factor SPF27-like protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1KLZ49.2e-0471.43pre-mRNA-splicing factor SPF27 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114953... [more]
A0A6J1EDE49.2e-0471.43pre-mRNA-splicing factor SPF27 homolog OS=Cucurbita moschata OX=3662 GN=LOC11143... [more]
A0A0A0LQG29.2e-0471.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042680 PE=4 SV=1[more]
A0A6J1CB049.2e-0471.43pre-mRNA-splicing factor SPF27 homolog OS=Momordica charantia OX=3673 GN=LOC1110... [more]
Match NameE-valueIdentityDescription
AT3G18165.13.7e-0571.43modifier of snc1,4 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..31

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029832.1MELO3C029832.1mRNA