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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAGGATTTATTTCGCCGCTTACAAAACCTATCAGCCAACCTTTCCTTCAATCATAGCACTATAATGAACTTCCTCCTCCAGCCGCAAGAGGCTCGACCAGCCTCACTCCTCTGCCACTGGGATGCACGTGTGCCACAACACCACCCGACAATAACCCGGTCGCAATTGGATCTTAGGTTTCCTACAAGGGTCGTCGTCAATCCCCACATGCTGCCGCTGCTTCAACATGAGCCACCGCTTAGTCACCTCCAGACGCAAACTAATATCCAGCTGCCACCCATTGTTTCCGCTACTCACATCCATTCAACTATTGAGGTTGGTGATGTCAAAATCAAATCCTCAGGTACAGACTTCCCCTCGAGAATAGCCCAACAACAATTGGACATGCTTCGACAATAA mRNA sequence ATGGAGGATTTATTTCGCCGCTTACAAAACCTATCAGCCAACCTTTCCTTCAATCATAGCACTATAATGAACTTCCTCCTCCAGCCGCAAGAGGCTCGACCAGCCTCACTCCTCTGCCACTGGGATGCACGTGTGCCACAACACCACCCGACAATAACCCGGTCGCAATTGGATCTTAGGTTTCCTACAAGGGTCGTCGTCAATCCCCACATGCTGCCGCTGCTTCAACATGAGCCACCGCTTAGTCACCTCCAGACGCAAACTAATATCCAGCTGCCACCCATTGTTTCCGCTACTCACATCCATTCAACTATTGAGGTTGGTGATGTCAAAATCAAATCCTCAGGTACAGACTTCCCCTCGAGAATAGCCCAACAACAATTGGACATGCTTCGACAATAA Coding sequence (CDS) ATGGAGGATTTATTTCGCCGCTTACAAAACCTATCAGCCAACCTTTCCTTCAATCATAGCACTATAATGAACTTCCTCCTCCAGCCGCAAGAGGCTCGACCAGCCTCACTCCTCTGCCACTGGGATGCACGTGTGCCACAACACCACCCGACAATAACCCGGTCGCAATTGGATCTTAGGTTTCCTACAAGGGTCGTCGTCAATCCCCACATGCTGCCGCTGCTTCAACATGAGCCACCGCTTAGTCACCTCCAGACGCAAACTAATATCCAGCTGCCACCCATTGTTTCCGCTACTCACATCCATTCAACTATTGAGGTTGGTGATGTCAAAATCAAATCCTCAGGTACAGACTTCCCCTCGAGAATAGCCCAACAACAATTGGACATGCTTCGACAATAA Protein sequence MEDLFRRLQNLSANLSFNHSTIMNFLLQPQEARPASLLCHWDARVPQHHPTITRSQLDLRFPTRVVVNPHMLPLLQHEPPLSHLQTQTNIQLPPIVSATHIHSTIEVGDVKIKSSGTDFPSRIAQQQLDMLRQ
Homology
BLAST of MELO3C029609 vs. NCBI nr
Match: KAA0038284.1 (reverse transcriptase [Cucumis melo var. makuwa]) HSP 1 Score: 237.3 bits (604), Expect = 7.8e-59 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 Query: 1 MEDLFRRLQNLSANLSFNHSTIMNFLLQPQEARPASLLCHWDARVPQHHPTITRSQLDLR 60 MEDLFRRLQNLSANLSFNHSTIMNFLLQPQEARPASLLCHWDARVPQHHPTITRSQLDLR Sbjct: 1 MEDLFRRLQNLSANLSFNHSTIMNFLLQPQEARPASLLCHWDARVPQHHPTITRSQLDLR 60
Query: 61 FPTRVVVNPHMLPLLQHEPPLSHLQTQTNIQLPPIVSATHIHSTIEVGDVKIKSSG 117 FPTRVVVNPHMLPLLQHEPPLSHLQTQTNIQLPPIVSATHIHSTIEVGDVKIKSSG Sbjct: 61 FPTRVVVNPHMLPLLQHEPPLSHLQTQTNIQLPPIVSATHIHSTIEVGDVKIKSSG 116
BLAST of MELO3C029609 vs. ExPASy TrEMBL
Match: A0A5A7T487 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001440 PE=4 SV=1) HSP 1 Score: 237.3 bits (604), Expect = 3.8e-59 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 Query: 1 MEDLFRRLQNLSANLSFNHSTIMNFLLQPQEARPASLLCHWDARVPQHHPTITRSQLDLR 60 MEDLFRRLQNLSANLSFNHSTIMNFLLQPQEARPASLLCHWDARVPQHHPTITRSQLDLR Sbjct: 1 MEDLFRRLQNLSANLSFNHSTIMNFLLQPQEARPASLLCHWDARVPQHHPTITRSQLDLR 60
Query: 61 FPTRVVVNPHMLPLLQHEPPLSHLQTQTNIQLPPIVSATHIHSTIEVGDVKIKSSG 117 FPTRVVVNPHMLPLLQHEPPLSHLQTQTNIQLPPIVSATHIHSTIEVGDVKIKSSG Sbjct: 61 FPTRVVVNPHMLPLLQHEPPLSHLQTQTNIQLPPIVSATHIHSTIEVGDVKIKSSG 116
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0038284.1 | 7.8e-59 | 100.00 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7T487 | 3.8e-59 | 100.00 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 121..133 |
Relationships
The following mRNA feature(s) are a part of this gene:
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