MELO3C029559.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C029559.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionMyb family transcription factor APL isoform X2
Locationchr02: 8258772 .. 8262234 (+)
RNA-Seq ExpressionMELO3C029559.jh1
SyntenyMELO3C029559.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGAAAGAAAGAAAAGAGAAGGGTATCAAACCTCTTGCACGATTTTTTCTTCTGCACAAAACATTTATCCCTAAATCCTTCTACACTATTTTCTCTCGTCCAAGGAAGAACAGGTACATCGTTTCATTCTTCTTCTTTATCTCTCTTCCTCTCTTGCCCTTTTCCAGCTTCTTCTTCTTCCTCCTATCTTAGATTCATCAACATTTCCAATCTCTTTTTCTCCCCAAGCCCTAATTTCCCACATTTTGTTTCTTCCAAGCACATCATCTCCATTTGTCGTCTTCAGTTGTCCCGTGCTTCTCCTCGCTTTCTCATCCGTCTGGTACATTCTTCGTTCATTCCTATAGAACTCCTCTTTGTTTTTTCGTTCTTCGATTCGTTCTTTGCTCTTCGACTTCCTTTTTGCTTAACTGCCACTAATTGCCTTCATTTACTTTTTCTTCATGGATTCGAACGTGTTTGATGTGGGTATTCTTGTTTAGTTTTTGTTGTTTGTTCTTCTGTCTGCAAACTATTTGAGAAAATGACTGAAAGAGTAATTTCTAGATTATGATTCCTTGGGTATGAAATTTTCTTCCTTGTTGACTAATAAACTTTGAGGATGATTGCACAAGATCTACTCTCATTTTTCTTTTTAAGTTCTACTCTAACTTTGGTCTTCTAGTTCTTGGATGCACATTTGATATATATGAGTTATTAGATTTTGAATGTTTGAGAAAAAAAGTTTGGAGGAAACCATTAGAAAATTGGAGACATATAGACAAAAGCTTCCAAGCTTGGAAAGGTAATTTCATTCTTGTAAAGTCATCTTCAAGATGGTTAAATATAAGTTTTCTTCATTTTTTTTTCTCAATAACTTTTATTGGGTCCTTACTTATTGTGTAGTGTATAGATTTCTTTTAGAAAAAAGGTAATTTTTTCTTTTTGGATTGTTTTTCAGTGGAAAGTTTTGTAAACAAGCAATTATATTATCTAATTTTCAAGTGAAATCTACATTGAAGACTTTCTGTGGAAAGTTTTGTAAACAAGCAATCTTAGTGCACGTGTTAATTTGCATTGTTATGGAAACTGAATTTTCTAATTGGTTGTGATATTAGTTATAACAATAATGCACATTGATTTTATTGTGGATTCGATGATGATAGGTAGTAGCATAGCATGTGTTTAAAATTAAGACTATTGTATCATCATCATGAATGCCTAAATTTGTTCTCTAATTGTGATTAAAAAACTACTAGAACTGATTTTAAATCTAATGCATTAAGATGCGGAAAACAGTCCTTTTAGTGCAGTTGATTTTAATTTTTAATAATGAGAAACCAGGATTATTAATCTTCTTCTTTTGTTCTTATAGTTGAAATCTATACATAGACTTCTTTTGTTTGTTAATTTATATTATTATTTTGTAAATTGTGATAGCAGTGAATCAAAATTACCATTTTGTGCATATTGCTTCTGAGGTGTTGCTTAAGAAAGAGTATGATGACAAGGTAAATGTTATAATATAATTATATATATATATATATATATATATATATATATATATATACACACACACATGTGTATCAATATGCTCATTCTATCTTGTGATGTGTTTTAAGGTTGACATTATTTATCTTTTTTGGGTCTACTGACGGTGCATTTCCGATTACAGATGTGTGGTCGTGTGGGGTGACCTTATATGTTCTTTGGTTTGTTATCCATTTGTTATAATTAATAGCAAAGTTAGATATTATTATTGGCTGCATATGTTTCCTCTGTGCTCCTAAAAATGGTTGGTTTGGTTTTCACGTTGACAACAAGATATTGTTTTGCAATAGGTGCTAACTAAACAATGCCTTTGTCCATTCCCTAAGGTACTATAACTCAAAAATGCATTTTAACTATTTTGTGATTCTCTAAAGGTATATTGATGGTTTTGTGAAATATATTGTTGGCTATGTGATGAAACATTTTGGTAGCTTACAATGTGTTTGATGAAATGCCTCAATGAAGCCTTTGGTTGATTTTTAGTTGATTTTTAATTGAATTTTGTTTGTTTAAATTAGGAAATCAAGGGCAAGGGAGATTTCATGGCTATGTGAGGAAGCTTTGGAAAAAAGAGAATGAAAAATGAATGGTTAGATTTTAAACTTTGATGGTGTGCAGGGCCTTTAAGCAATTTCTAGAATTTAGTTGTTATTGTCATACATGTTTAGTATTAGGTTTTATTTCTAGTAGTGCAGGAATTTCAATCTCCTCTCTTATTGAAAAGAATATTTAGCCTTAGGATGTATTTAGGATTGTTTCTCAAGTAATGACTTTTTGGAATGAATAGAAAATTATTTGGATACTTGGTTTTATATTCTGCTATGGTTTCTTACATAGTACTTTAAGGATGGCCTTCATGACACCTTCACTTTCTTGAATAGATCCTTTTGATGCTTCGGAAAGTAACTTGTCTAGAACCCTTCTTTCTCATTTTTTGCTTGTTCTCTAAAATTAAGGTCATCCAAAAATTCTCTCTATTTTTCTTCTCTTTTGTTTCTCTCTTTTTCCCTCAGTTTATTCTCATTTCCTTGCTCACACATGTTTGTACTATACATGTACTTTTCTGATGGTTTTGATGTTCTCCTTTTTCTTAGCGAATGCCTTTAATCGAAAACCATATCCCCTTGAAAAAGTTCTATTTTATATATGCGTGAGCAATTTCTTGTATATATGTTAACAAAAGTTCTCATCATATATTTGTTTTTGTAACATATTACTTGTATAAAATCTTTCATTTCAAGAACATTTACATGCATAAACTTTGGTTCCTTTTGCCCTAAACCCTAAACCTTATTTAGAATAACTTAAGTTTTTTGAATTAGCAAAAACAATGAACGGGTCCTTTGAGTTAACCCATAACATGCATGCTCTGTTACTTATCCTAAAGCTTTGTCATGCATTTGAATTAGTGCTCAATTCTACTACTTCCTCGTGAATGTTCTTTCTTATTCTCTATCTTCAAGCTTGATTTTTAATTCATGAAAATATTTGATAGCTTTGTGTGTTGATAATTGGAAACTTTATGTTGGGTTGTTTTTTGTTCAACGAGTTCTTGTGTGAACATTTCCTTTAGAATGGAAGTTCATATCAACTATTTTTAGGTATGGACTTTTTCTCTTTATGATAAGATAACAACAAAAAGGAAAAAAAAGCATTGAGGCCTTATAAAATAGAAGTTTGTTTGAATTTGAATTTCATGTCCTCTCTCTTATTGTATCTTTTTATCCATTTTATAAGGTCTTTTATAGCATGTGTAAGTGAATGTGTTGTGTATATGAATGTGTTGCAGTTAAATGAACTGAATATAAATCTTTTTTATATTCTTATTTTGATGTGTAGAGTCATACTTTAAATTTTCATTTTGTTTTGTTACTAGTTTTGCAAGAATCCATTGGAGCAATAGAGCCATATTTGTGGCAATTGATTGA

mRNA sequence

ATGAAAGGAAAGAAAGAAAAGAGAAGGGTATCAAACCTCTTGCACGATTTTTTCTTCTGCACAAAACATTTATCCCTAAATCCTTCTACACTATTTTCTCTCGTCCAAGGAAGAACAGGTACATCGTTTCATTCTTCTTCTTTATCTCTCTTCCTCTCTTGCCCTTTTCCAGCTTCTTCTTCTTCCTCCTATCTTAGATTCATCAACATTTCCAATCTCTTTTTCTCCCCAAGCCCTAATTTCCCACATTTTGTTTCTTCCAAGCACATCATCTCCATTTGTCGTCTTCAGTTGTCCCGTGCTTCTCCTCGCTTTCTCATCCGTCTGTTCTACTCTAACTTTGGTCTTCTAGTTCTTGGATGCACATTTGATATATATGAGTTATTAGATTTTGAATGTTTGAGAAAAAAAGTTTGGAGGAAACCATTAGAAAATTGGAGACATATAGACAAAAGCTTCCAAGCTTGGAAAGCAGTGAATCAAAATTACCATTTTGTGCATATTGCTTCTGAGGTGTTGCTTAAGAAAGAGTATGATGACAAGGAAATCAAGGGCAAGGGAGATTTCATGGCTATTTTTGCAAGAATCCATTGGAGCAATAGAGCCATATTTGTGGCAATTGATTGA

Coding sequence (CDS)

ATGAAAGGAAAGAAAGAAAAGAGAAGGGTATCAAACCTCTTGCACGATTTTTTCTTCTGCACAAAACATTTATCCCTAAATCCTTCTACACTATTTTCTCTCGTCCAAGGAAGAACAGGTACATCGTTTCATTCTTCTTCTTTATCTCTCTTCCTCTCTTGCCCTTTTCCAGCTTCTTCTTCTTCCTCCTATCTTAGATTCATCAACATTTCCAATCTCTTTTTCTCCCCAAGCCCTAATTTCCCACATTTTGTTTCTTCCAAGCACATCATCTCCATTTGTCGTCTTCAGTTGTCCCGTGCTTCTCCTCGCTTTCTCATCCGTCTGTTCTACTCTAACTTTGGTCTTCTAGTTCTTGGATGCACATTTGATATATATGAGTTATTAGATTTTGAATGTTTGAGAAAAAAAGTTTGGAGGAAACCATTAGAAAATTGGAGACATATAGACAAAAGCTTCCAAGCTTGGAAAGCAGTGAATCAAAATTACCATTTTGTGCATATTGCTTCTGAGGTGTTGCTTAAGAAAGAGTATGATGACAAGGAAATCAAGGGCAAGGGAGATTTCATGGCTATTTTTGCAAGAATCCATTGGAGCAATAGAGCCATATTTGTGGCAATTGATTGA

Protein sequence

MKGKKEKRRVSNLLHDFFFCTKHLSLNPSTLFSLVQGRTGTSFHSSSLSLFLSCPFPASSSSSYLRFINISNLFFSPSPNFPHFVSSKHIISICRLQLSRASPRFLIRLFYSNFGLLVLGCTFDIYELLDFECLRKKVWRKPLENWRHIDKSFQAWKAVNQNYHFVHIASEVLLKKEYDDKEIKGKGDFMAIFARIHWSNRAIFVAID
Homology
[Close]
BLAST of MELO3C029559.jh1 vs. NCBI nr
Match: XP_016902535.1 (PREDICTED: uncharacterized protein LOC103499160 [Cucumis melo])

HSP 1 Score: 162 bits (410), Expect = 2.47e-46
Identity = 99/175 (56.57%), Postives = 116/175 (66.29%), Query Frame = 0 

Query: 4   KKEKRRVSNLLHDFFFCTKHLSLNPSTLFSLVQGRTGTSFHSSSLSLFLSCPFPASSSSS 63
           KKEKR+V NLLHDFF CTKHLS NPSTLFSL QGRTGTSFHSSSLSL LSC FP+SSSSS
Sbjct: 30  KKEKRKVPNLLHDFFLCTKHLSPNPSTLFSLAQGRTGTSFHSSSLSLCLSCLFPSSSSSS 89

Query: 64  YLRFINISNLFFSPSPNFPHFVSSKHIISICRLQLSRASPRFLIRLFYSNFGLLVLGCTF 123
            LRFINISN FFSPSP FP FVSS+H+IS+C LQ SRASPR L+ L              
Sbjct: 90  -LRFINISNPFFSPSPCFPLFVSSRHVISVCHLQSSRASPRSLLHL-------------- 149

Query: 124 DIYELLDFECLRKKVWRKPLENWRH-----------IDKSFQAWKAV--NQNYHF 165
           +I    DF  +     +K ++N  H           +++SF+ ++ V  NQ  HF
Sbjct: 150 EIKAKGDFMAMEGSFEKKRIKNEWHFKDDLHHTFAFLNRSFRCFEKVELNQTCHF 189

[Close]
BLAST of MELO3C029559.jh1 vs. NCBI nr
Match: XP_008447319.1 (PREDICTED: uncharacterized protein LOC103489789 [Cucumis melo])

HSP 1 Score: 137 bits (346), Expect = 1.68e-35
Identity = 94/177 (53.11%), Postives = 106/177 (59.89%), Query Frame = 0 

Query: 7   KRRVSNLLHDFFFCTKHLSLNPSTLFSLVQGRTGTSFHSSSLSLFLSCPFPASSSSSYLR 66
           K R    LHDFFF TKHLS NP  LFSL QGRTGT+F SSSL L LSCPFP+SSSSS LR
Sbjct: 91  KERKEKALHDFFFYTKHLSPNPFALFSLAQGRTGTTFCSSSLFLCLSCPFPSSSSSS-LR 150

Query: 67  FINISNLFFSPSPNFPHFVSSKHIISICRLQLSRASPRFLIRLFYSNFGLLVL------- 126
           FINISN FFSPSP+F HFVSS+ +I +CRLQ SRASP  L+ L      L +L       
Sbjct: 151 FINISNPFFSPSPSFAHFVSSRRVIFVCRLQSSRASPCSLLHLRIKITILCILLNEVLLK 210

Query: 127 ----GCTF--DIYELL-----DFECLRKKVWRKPL-ENWRHIDKSFQAWKAVNQNYH 164
               G  F  D+Y         F C  K   R PL EN   ++KS   W  +NQ  H
Sbjct: 211 KEYGGKHFKDDLYHTFAFLNRSFRCFNK---RMPLIENHIPLEKSI-LWVELNQTCH 262

[Close]
BLAST of MELO3C029559.jh1 vs. NCBI nr
Match: KAA0031659.1 (myb family transcription factor APL isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 4.89e-08
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 147 RHIDKSFQ-AWKAVNQNYHFVHIASEVLLKKEYDDKEIKGKGDFMAI 192
           RH+D   Q   K  NQNYHFV+IA EVLLKKEY  K+IK KGDFMA+
Sbjct: 62  RHVDAVTQLCGKDTNQNYHFVYIALEVLLKKEYGGKKIKAKGDFMAM 108

[Close]
BLAST of MELO3C029559.jh1 vs. NCBI nr
Match: XP_008447166.1 (PREDICTED: uncharacterized protein LOC103489683 isoform X1 [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 4.12e-07
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 45 SSSLSLFLSCPFPASSSSSYLRFINISNLFFSPSPNFPHFVSSKHIISI 93
          SSSLSL L  PFP+SSSSS LRFINISN FFSPSPNFP  VSS+   S+
Sbjct: 5  SSSLSLCLFFPFPSSSSSSSLRFINISNPFFSPSPNFPLLVSSRRRSSL 53

[Close]
BLAST of MELO3C029559.jh1 vs. NCBI nr
Match: XP_004139811.1 (uncharacterized protein LOC101209189 isoform X1 [Cucumis sativus] >KAE8646086.1 hypothetical protein Csa_016304 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 1.41e-06
Identity = 37/49 (75.51%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 45 SSSLSLFLSCPFPASSSSSYLRFINISNLFFSPSPNFPHFVSSKHIISI 93
          SSSLSL L  PFP+SSSSS LRFINISN FFSPSPNFP FVSS+   S+
Sbjct: 4  SSSLSLCLFFPFPSSSSSS-LRFINISNPFFSPSPNFPLFVSSRRRSSL 51

[Close]
BLAST of MELO3C029559.jh1 vs. ExPASy TrEMBL
Match: A0A1S4E3H9 (uncharacterized protein LOC103499160 OS=Cucumis melo OX=3656 GN=LOC103499160 PE=4 SV=1)

HSP 1 Score: 162 bits (410), Expect = 1.20e-46
Identity = 99/175 (56.57%), Postives = 116/175 (66.29%), Query Frame = 0 

Query: 4   KKEKRRVSNLLHDFFFCTKHLSLNPSTLFSLVQGRTGTSFHSSSLSLFLSCPFPASSSSS 63
           KKEKR+V NLLHDFF CTKHLS NPSTLFSL QGRTGTSFHSSSLSL LSC FP+SSSSS
Sbjct: 30  KKEKRKVPNLLHDFFLCTKHLSPNPSTLFSLAQGRTGTSFHSSSLSLCLSCLFPSSSSSS 89

Query: 64  YLRFINISNLFFSPSPNFPHFVSSKHIISICRLQLSRASPRFLIRLFYSNFGLLVLGCTF 123
            LRFINISN FFSPSP FP FVSS+H+IS+C LQ SRASPR L+ L              
Sbjct: 90  -LRFINISNPFFSPSPCFPLFVSSRHVISVCHLQSSRASPRSLLHL-------------- 149

Query: 124 DIYELLDFECLRKKVWRKPLENWRH-----------IDKSFQAWKAV--NQNYHF 165
           +I    DF  +     +K ++N  H           +++SF+ ++ V  NQ  HF
Sbjct: 150 EIKAKGDFMAMEGSFEKKRIKNEWHFKDDLHHTFAFLNRSFRCFEKVELNQTCHF 189

[Close]
BLAST of MELO3C029559.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BH46 (uncharacterized protein LOC103489789 OS=Cucumis melo OX=3656 GN=LOC103489789 PE=4 SV=1)

HSP 1 Score: 137 bits (346), Expect = 8.13e-36
Identity = 94/177 (53.11%), Postives = 106/177 (59.89%), Query Frame = 0 

Query: 7   KRRVSNLLHDFFFCTKHLSLNPSTLFSLVQGRTGTSFHSSSLSLFLSCPFPASSSSSYLR 66
           K R    LHDFFF TKHLS NP  LFSL QGRTGT+F SSSL L LSCPFP+SSSSS LR
Sbjct: 91  KERKEKALHDFFFYTKHLSPNPFALFSLAQGRTGTTFCSSSLFLCLSCPFPSSSSSS-LR 150

Query: 67  FINISNLFFSPSPNFPHFVSSKHIISICRLQLSRASPRFLIRLFYSNFGLLVL------- 126
           FINISN FFSPSP+F HFVSS+ +I +CRLQ SRASP  L+ L      L +L       
Sbjct: 151 FINISNPFFSPSPSFAHFVSSRRVIFVCRLQSSRASPCSLLHLRIKITILCILLNEVLLK 210

Query: 127 ----GCTF--DIYELL-----DFECLRKKVWRKPL-ENWRHIDKSFQAWKAVNQNYH 164
               G  F  D+Y         F C  K   R PL EN   ++KS   W  +NQ  H
Sbjct: 211 KEYGGKHFKDDLYHTFAFLNRSFRCFNK---RMPLIENHIPLEKSI-LWVELNQTCH 262

[Close]
BLAST of MELO3C029559.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SQW3 (Myb family transcription factor APL isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004380 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.37e-08
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 147 RHIDKSFQ-AWKAVNQNYHFVHIASEVLLKKEYDDKEIKGKGDFMAI 192
           RH+D   Q   K  NQNYHFV+IA EVLLKKEY  K+IK KGDFMA+
Sbjct: 62  RHVDAVTQLCGKDTNQNYHFVYIALEVLLKKEYGGKKIKAKGDFMAM 108

[Close]
BLAST of MELO3C029559.jh1 vs. ExPASy TrEMBL
Match: A0A0A0K8V7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G232500 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.72e-07
Identity = 37/49 (75.51%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 45 SSSLSLFLSCPFPASSSSSYLRFINISNLFFSPSPNFPHFVSSKHIISI 93
          SSSLSL L  PFP+SSSSS LRFINISN FFSPSPNFP FVSS+   S+
Sbjct: 4  SSSLSLCLFFPFPSSSSSS-LRFINISNPFFSPSPNFPLFVSSRRRSSL 51

[Close]
BLAST of MELO3C029559.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BHE5 (uncharacterized protein LOC103489683 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489683 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.00e-07
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 45 SSSLSLFLSCPFPASSSSSYLRFINISNLFFSPSPNFPHFVSSKHIISI 93
          SSSLSL L  PFP+SSSSS LRFINISN FFSPSPNFP  VSS+   S+
Sbjct: 5  SSSLSLCLFFPFPSSSSSSSLRFINISNPFFSPSPNFPLLVSSRRRSSL 53

The following BLAST results are available for this feature:
BLAST of MELO3C029559.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016902535.12.47e-4656.57PREDICTED: uncharacterized protein LOC103499160 [Cucumis melo][more]
XP_008447319.11.68e-3553.11PREDICTED: uncharacterized protein LOC103489789 [Cucumis melo][more]
KAA0031659.14.89e-0865.96myb family transcription factor APL isoform X2 [Cucumis melo var. makuwa][more]
XP_008447166.14.12e-0773.47PREDICTED: uncharacterized protein LOC103489683 isoform X1 [Cucumis melo][more]
XP_004139811.11.41e-0675.51uncharacterized protein LOC101209189 isoform X1 [Cucumis sativus] >KAE8646086.1 ... [more]
BLAST of MELO3C029559.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029559.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4E3H91.20e-4656.57uncharacterized protein LOC103499160 OS=Cucumis melo OX=3656 GN=LOC103499160 PE=... [more]
A0A1S3BH468.13e-3653.11uncharacterized protein LOC103489789 OS=Cucumis melo OX=3656 GN=LOC103489789 PE=... [more]
A0A5A7SQW32.37e-0865.96Myb family transcription factor APL isoform X2 OS=Cucumis melo var. makuwa OX=11... [more]
A0A0A0K8V71.72e-0775.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G232500 PE=4 SV=1[more]
A0A1S3BHE52.00e-0773.47uncharacterized protein LOC103489683 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of MELO3C029559.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029559.jh1.t1MELO3C029559.jh1.t1mRNA