Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGTTTGCGACATTGTAAGGGTACTAAAGACCAGTATGATAATTGGAGAGCATTTAGAAATTGGATTACAATTAATGCTATGTCAAAATCCTTAGTTCCAAACATAGAATTGAAGAAATATCATGATGGGAAAGAAGAGGAATTAAAGCGATTAAGAGAAATGAATTGTGTTTTGGCAACAGAGAACGAAAAGTTAGGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTCTTAATACTCCAAGAGATTTGGACGAGGCGAAACAAAAGCGATTGGGGTTGGAGAAGGAAAACGATTCTTTAAACACTGAGGCAATTCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGAAATATTGCCGACTTACATGAAGTAGAAGCTAAAAAGGTATGCATTACATATTTGAAACATGAAATAGAAAGATTGAATGGGGTTGCCTTAGAATTCCAAAATGCATTACATGAACAAGCCACGTCATCTCAACAGACCGCTTTGGAAATTGAGGTTCTACAACATTCGATTAAAGAATAA
mRNA sequence
ATGAAGAGTTTGCGACATTGTAAGGGTACTAAAGACCAGTATGATAATTGGAGAGCATTTAGAAATTGGATTACAATTAATGCTATGTCAAAATCCTTAGTTCCAAACATAGAATTGAAGAAATATCATGATGGGAAAGAAGAGGAATTAAAGCGATTAAGAGAAATGAATTGTGTTTTGGCAACAGAGAACGAAAAGTTAGGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTCTTAATACTCCAAGAGATTTGGACGAGGCGAAACAAAAGCGATTGGGGTTGGAGAAGGAAAACGATTCTTTAAACACTGAGGCAATTCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGAAATATTGCCGACTTACATGAAGTAGAAGCTAAAAAGGTATGCATTACATATTTGAAACATGAAATAGAAAGATTGAATGGGGTTGCCTTAGAATTCCAAAATGCATTACATGAACAAGCCACGTCATCTCAACAGACCGCTTTGGAAATTGAGGTTCTACAACATTCGATTAAAGAATAA
Coding sequence (CDS)
ATGAAGAGTTTGCGACATTGTAAGGGTACTAAAGACCAGTATGATAATTGGAGAGCATTTAGAAATTGGATTACAATTAATGCTATGTCAAAATCCTTAGTTCCAAACATAGAATTGAAGAAATATCATGATGGGAAAGAAGAGGAATTAAAGCGATTAAGAGAAATGAATTGTGTTTTGGCAACAGAGAACGAAAAGTTAGGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTCTTAATACTCCAAGAGATTTGGACGAGGCGAAACAAAAGCGATTGGGGTTGGAGAAGGAAAACGATTCTTTAAACACTGAGGCAATTCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGAAATATTGCCGACTTACATGAAGTAGAAGCTAAAAAGGTATGCATTACATATTTGAAACATGAAATAGAAAGATTGAATGGGGTTGCCTTAGAATTCCAAAATGCATTACATGAACAAGCCACGTCATCTCAACAGACCGCTTTGGAAATTGAGGTTCTACAACATTCGATTAAAGAATAA
Protein sequence
MKSLRHCKGTKDQYDNWRAFRNWITINAMSKSLVPNIELKKYHDGKEEELKRLREMNCVLATENEKLGEEVKKWVQQALNTPRDLDEAKQKRLGLEKENDSLNTEAIQVRKKNKRLLRNIADLHEVEAKKVCITYLKHEIERLNGVALEFQNALHEQATSSQQTALEIEVLQHSIKE
Homology
BLAST of MELO3C029509 vs. NCBI nr
Match:
TYK09458.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 227.6 bits (579), Expect = 8.2e-56
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0
Query: 56 MNCVLATENEKLGEEVKKWVQQALNTPRDLDEAKQKRLGLEKENDSLNTEAIQVRKKNKR 115
MNCVLATENEKLGEEVKKWVQQA+NTPRDLDEAKQKRL LEKENDSLNTEAIQVRKKNKR
Sbjct: 1 MNCVLATENEKLGEEVKKWVQQAVNTPRDLDEAKQKRLELEKENDSLNTEAIQVRKKNKR 60
Query: 116 LLRNIADLHEVEAKKVCITYLKHEIERLNGVALEFQNALHEQATSSQQTALEIEVLQHSI 175
LLRNIADLHEVEAKKVCITYLKHEIERLNGVALEFQNALHEQATSSQQTA+EIEVLQHSI
Sbjct: 61 LLRNIADLHEVEAKKVCITYLKHEIERLNGVALEFQNALHEQATSSQQTAMEIEVLQHSI 120
Query: 176 KE 178
KE
Sbjct: 121 KE 122
BLAST of MELO3C029509 vs. NCBI nr
Match:
TYK16834.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 220.7 bits (561), Expect = 1.0e-53
Identity = 126/178 (70.79%), Postives = 136/178 (76.40%), Query Frame = 0
Query: 1 MKSLRHCKGTKDQYDNWRAFRNWITINAMSKSLVPNIELKKYHDGKEEELKRLREMNCVL 60
MKSLRHC+GT +QYDNWRA RN ITINAMS+SLVPNIELKKYHD KE+ELKRLREMNCV+
Sbjct: 295 MKSLRHCEGTTEQYDNWRASRNGITINAMSESLVPNIELKKYHD-KEKELKRLREMNCVM 354
Query: 61 ATENEKLGEEVKKWVQQALNTPRDLDEAKQKRLGLEKENDSLNTEAIQVRKKNKRLLRNI 120
ATENEKL EEVKKWVQQA+NT RDLDEAK+K L LEKENDSLNTEAIQVRKKNKRLLRNI
Sbjct: 355 ATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKRLLRNI 414
Query: 121 ADLH-EVEAKKVCITYLKHEIERLNGVALEFQNALHEQATSSQQTALEIEVLQHSIKE 178
A+LH E+EAKK TA+EIEVLQHSIKE
Sbjct: 415 ANLHEEIEAKK---------------------------------TAIEIEVLQHSIKE 438
BLAST of MELO3C029509 vs. NCBI nr
Match:
KAA0032013.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 220.7 bits (561), Expect = 1.0e-53
Identity = 126/178 (70.79%), Postives = 136/178 (76.40%), Query Frame = 0
Query: 1 MKSLRHCKGTKDQYDNWRAFRNWITINAMSKSLVPNIELKKYHDGKEEELKRLREMNCVL 60
MKSLRHC+GT +QYDNWRA RN ITINAMS+SLVPNIELKKYHD KE+ELKRLREMNCV+
Sbjct: 231 MKSLRHCEGTTEQYDNWRASRNGITINAMSESLVPNIELKKYHD-KEKELKRLREMNCVM 290
Query: 61 ATENEKLGEEVKKWVQQALNTPRDLDEAKQKRLGLEKENDSLNTEAIQVRKKNKRLLRNI 120
ATENEKL EEVKKWVQQA+NT RDLDEAK+K L LEKENDSLNTEAIQVRKKNKRLLRNI
Sbjct: 291 ATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKRLLRNI 350
Query: 121 ADLH-EVEAKKVCITYLKHEIERLNGVALEFQNALHEQATSSQQTALEIEVLQHSIKE 178
A+LH E+EAKK TA+EIEVLQHSIKE
Sbjct: 351 ANLHEEIEAKK---------------------------------TAIEIEVLQHSIKE 374
BLAST of MELO3C029509 vs. NCBI nr
Match:
XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])
HSP 1 Score: 198.0 bits (502), Expect = 7.0e-47
Identity = 115/150 (76.67%), Postives = 125/150 (83.33%), Query Frame = 0
Query: 29 MSKSLVPNIELKKYHDGKEEELKRLREMNCVLATENEKLGEEVKKWVQQALNTPRDLDEA 88
MS+SLVPNIELKKYHD +E+ELKRLREMNCVLATENEKL EEVKKWVQQA+NT RDLDEA
Sbjct: 1 MSESLVPNIELKKYHD-QEKELKRLREMNCVLATENEKLREEVKKWVQQAVNTQRDLDEA 60
Query: 89 KQKRLGLEKENDSLNTEAIQVRKKNKRLLRNIADLH-EVEAKKVCITYLKHEIERLNGVA 148
K+KRL LEKENDSLNTEAIQVRKKNKRLLRNIA+LH E+EA+K
Sbjct: 61 KRKRLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAEK----------------- 120
Query: 149 LEFQNALHEQATSSQQTALEIEVLQHSIKE 178
EFQNALHEQA SSQQTA+ IEVLQHSI+E
Sbjct: 121 -EFQNALHEQAISSQQTAMGIEVLQHSIEE 131
BLAST of MELO3C029509 vs. NCBI nr
Match:
KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 197.6 bits (501), Expect = 9.1e-47
Identity = 106/123 (86.18%), Postives = 115/123 (93.50%), Query Frame = 0
Query: 56 MNCVLATENEKLGEEVKKWVQQALNTPRDLDEAKQKRLGLEKENDSLNTEAIQVRKKNKR 115
MNCVLATENEKL EEVKKWVQQA+NT RDLDEAK+KRL LEKENDSLNTEAIQ+RKKNKR
Sbjct: 1 MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQMRKKNKR 60
Query: 116 LLRNIADLH-EVEAKKVCITYLKHEIERLNGVALEFQNALHEQATSSQQTALEIEVLQHS 175
LLRNIA+LH E+EAKKVCIT LKHEIE+LNG+ALEFQNALHEQA SSQQTA+ IEVLQH
Sbjct: 61 LLRNIANLHEEIEAKKVCITDLKHEIEKLNGIALEFQNALHEQAISSQQTAMGIEVLQHL 120
Query: 176 IKE 178
I+E
Sbjct: 121 IEE 123
BLAST of MELO3C029509 vs. ExPASy TrEMBL
Match:
A0A5D3CE19 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00510 PE=4 SV=1)
HSP 1 Score: 227.6 bits (579), Expect = 4.0e-56
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0
Query: 56 MNCVLATENEKLGEEVKKWVQQALNTPRDLDEAKQKRLGLEKENDSLNTEAIQVRKKNKR 115
MNCVLATENEKLGEEVKKWVQQA+NTPRDLDEAKQKRL LEKENDSLNTEAIQVRKKNKR
Sbjct: 1 MNCVLATENEKLGEEVKKWVQQAVNTPRDLDEAKQKRLELEKENDSLNTEAIQVRKKNKR 60
Query: 116 LLRNIADLHEVEAKKVCITYLKHEIERLNGVALEFQNALHEQATSSQQTALEIEVLQHSI 175
LLRNIADLHEVEAKKVCITYLKHEIERLNGVALEFQNALHEQATSSQQTA+EIEVLQHSI
Sbjct: 61 LLRNIADLHEVEAKKVCITYLKHEIERLNGVALEFQNALHEQATSSQQTAMEIEVLQHSI 120
Query: 176 KE 178
KE
Sbjct: 121 KE 122
BLAST of MELO3C029509 vs. ExPASy TrEMBL
Match:
A0A5A7SNY0 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001110 PE=4 SV=1)
HSP 1 Score: 220.7 bits (561), Expect = 4.8e-54
Identity = 126/178 (70.79%), Postives = 136/178 (76.40%), Query Frame = 0
Query: 1 MKSLRHCKGTKDQYDNWRAFRNWITINAMSKSLVPNIELKKYHDGKEEELKRLREMNCVL 60
MKSLRHC+GT +QYDNWRA RN ITINAMS+SLVPNIELKKYHD KE+ELKRLREMNCV+
Sbjct: 231 MKSLRHCEGTTEQYDNWRASRNGITINAMSESLVPNIELKKYHD-KEKELKRLREMNCVM 290
Query: 61 ATENEKLGEEVKKWVQQALNTPRDLDEAKQKRLGLEKENDSLNTEAIQVRKKNKRLLRNI 120
ATENEKL EEVKKWVQQA+NT RDLDEAK+K L LEKENDSLNTEAIQVRKKNKRLLRNI
Sbjct: 291 ATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKRLLRNI 350
Query: 121 ADLH-EVEAKKVCITYLKHEIERLNGVALEFQNALHEQATSSQQTALEIEVLQHSIKE 178
A+LH E+EAKK TA+EIEVLQHSIKE
Sbjct: 351 ANLHEEIEAKK---------------------------------TAIEIEVLQHSIKE 374
BLAST of MELO3C029509 vs. ExPASy TrEMBL
Match:
A0A5D3D0S2 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001090 PE=4 SV=1)
HSP 1 Score: 220.7 bits (561), Expect = 4.8e-54
Identity = 126/178 (70.79%), Postives = 136/178 (76.40%), Query Frame = 0
Query: 1 MKSLRHCKGTKDQYDNWRAFRNWITINAMSKSLVPNIELKKYHDGKEEELKRLREMNCVL 60
MKSLRHC+GT +QYDNWRA RN ITINAMS+SLVPNIELKKYHD KE+ELKRLREMNCV+
Sbjct: 295 MKSLRHCEGTTEQYDNWRASRNGITINAMSESLVPNIELKKYHD-KEKELKRLREMNCVM 354
Query: 61 ATENEKLGEEVKKWVQQALNTPRDLDEAKQKRLGLEKENDSLNTEAIQVRKKNKRLLRNI 120
ATENEKL EEVKKWVQQA+NT RDLDEAK+K L LEKENDSLNTEAIQVRKKNKRLLRNI
Sbjct: 355 ATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKRLLRNI 414
Query: 121 ADLH-EVEAKKVCITYLKHEIERLNGVALEFQNALHEQATSSQQTALEIEVLQHSIKE 178
A+LH E+EAKK TA+EIEVLQHSIKE
Sbjct: 415 ANLHEEIEAKK---------------------------------TAIEIEVLQHSIKE 438
BLAST of MELO3C029509 vs. ExPASy TrEMBL
Match:
A0A1S3CLQ1 (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)
HSP 1 Score: 198.0 bits (502), Expect = 3.4e-47
Identity = 115/150 (76.67%), Postives = 125/150 (83.33%), Query Frame = 0
Query: 29 MSKSLVPNIELKKYHDGKEEELKRLREMNCVLATENEKLGEEVKKWVQQALNTPRDLDEA 88
MS+SLVPNIELKKYHD +E+ELKRLREMNCVLATENEKL EEVKKWVQQA+NT RDLDEA
Sbjct: 1 MSESLVPNIELKKYHD-QEKELKRLREMNCVLATENEKLREEVKKWVQQAVNTQRDLDEA 60
Query: 89 KQKRLGLEKENDSLNTEAIQVRKKNKRLLRNIADLH-EVEAKKVCITYLKHEIERLNGVA 148
K+KRL LEKENDSLNTEAIQVRKKNKRLLRNIA+LH E+EA+K
Sbjct: 61 KRKRLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAEK----------------- 120
Query: 149 LEFQNALHEQATSSQQTALEIEVLQHSIKE 178
EFQNALHEQA SSQQTA+ IEVLQHSI+E
Sbjct: 121 -EFQNALHEQAISSQQTAMGIEVLQHSIEE 131
BLAST of MELO3C029509 vs. ExPASy TrEMBL
Match:
A0A5A7VDD9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00070 PE=4 SV=1)
HSP 1 Score: 197.6 bits (501), Expect = 4.4e-47
Identity = 106/123 (86.18%), Postives = 115/123 (93.50%), Query Frame = 0
Query: 56 MNCVLATENEKLGEEVKKWVQQALNTPRDLDEAKQKRLGLEKENDSLNTEAIQVRKKNKR 115
MNCVLATENEKL EEVKKWVQQA+NT RDLDEAK+KRL LEKENDSLNTEAIQ+RKKNKR
Sbjct: 1 MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQMRKKNKR 60
Query: 116 LLRNIADLH-EVEAKKVCITYLKHEIERLNGVALEFQNALHEQATSSQQTALEIEVLQHS 175
LLRNIA+LH E+EAKKVCIT LKHEIE+LNG+ALEFQNALHEQA SSQQTA+ IEVLQH
Sbjct: 61 LLRNIANLHEEIEAKKVCITDLKHEIEKLNGIALEFQNALHEQAISSQQTAMGIEVLQHL 120
Query: 176 IKE 178
I+E
Sbjct: 121 IEE 123
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYK09458.1 | 8.2e-56 | 97.54 | glial fibrillary acidic protein-like [Cucumis melo var. makuwa] | [more] |
TYK16834.1 | 1.0e-53 | 70.79 | glial fibrillary acidic protein-like [Cucumis melo var. makuwa] | [more] |
KAA0032013.1 | 1.0e-53 | 70.79 | glial fibrillary acidic protein-like [Cucumis melo var. makuwa] | [more] |
XP_008464352.1 | 7.0e-47 | 76.67 | PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo] | [more] |
KAA0065294.1 | 9.1e-47 | 86.18 | glial fibrillary acidic protein-like [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3CE19 | 4.0e-56 | 97.54 | Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5A7SNY0 | 4.8e-54 | 70.79 | Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5D3D0S2 | 4.8e-54 | 70.79 | Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A1S3CLQ1 | 3.4e-47 | 76.67 | glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=... | [more] |
A0A5A7VDD9 | 4.4e-47 | 86.18 | Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
Match Name | E-value | Identity | Description | |