MELO3C029493 (gene) Melon (DHL92) v4

Overview
NameMELO3C029493
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Description(1->3)-beta-glucan endohydrolase
Locationchr02: 6258356 .. 6258706 (+)
RNA-Seq ExpressionMELO3C029493
SyntenyMELO3C029493
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGCGATTAATTATAATAATGACGATGAAGATTCAATGGCGCTTTTTCCCTTTGGATCTTCCTCTGGCTTCGGCAGCTTCGGTTCTGGTTGCTATCATCCTCACCTCCCTTCCCCCACTGGTATTCTTTCCCTTCTTTTCTACCTATTTCTTAAAACTTCAAATTAAAGTACGGGTGACTCCTAGGATGCCCTCCATTTGCGTGCTTGATACTCGAGCCTTGATTTTCTATGTTCTATGCTTTATATTATATATATATATGCTCTATATTATATACTAGATACTACTATTAAACTAATTAACTACTCGATGTTCAATGCTCGATATTTAGTGTTCAATACTTGA

mRNA sequence

ATGGCGATGGCGATTAATTATAATAATGACGATGAAGATTCAATGGCGCTTTTTCCCTTTGGATCTTCCTCTGGCTTCGGCAGCTTCGGTTCTGGTTGCTATCATCCTCACCTCCCTTCCCCCACTGATACTACTATTAAACTAATTAACTACTCGATGTTCAATGCTCGATATTTAGTGTTCAATACTTGA

Coding sequence (CDS)

ATGGCGATGGCGATTAATTATAATAATGACGATGAAGATTCAATGGCGCTTTTTCCCTTTGGATCTTCCTCTGGCTTCGGCAGCTTCGGTTCTGGTTGCTATCATCCTCACCTCCCTTCCCCCACTGATACTACTATTAAACTAATTAACTACTCGATGTTCAATGCTCGATATTTAGTGTTCAATACTTGA

Protein sequence

MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPTDTTIKLINYSMFNARYLVFNT
Homology
[Close]
BLAST of MELO3C029493 vs. NCBI nr
Match: TYK18912.1 (glucan endo-1,3-beta-glucosidase-like [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 8.6e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0 

Query: 1  MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPT 43
          MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPT
Sbjct: 1  MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPT 42

[Close]
BLAST of MELO3C029493 vs. NCBI nr
Match: XP_016900880.1 (PREDICTED: glucan endo-1,3-beta-glucosidase-like [Cucumis melo] >KAA0067209.1 glucan endo-1,3-beta-glucosidase-like [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 8.6e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0 

Query: 1  MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPT 43
          MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPT
Sbjct: 1  MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPT 42

[Close]
BLAST of MELO3C029493 vs. NCBI nr
Match: XP_011660145.1 (glucan endo-1,3-beta-glucosidase isoform X3 [Cucumis sativus] >XP_011660146.1 glucan endo-1,3-beta-glucosidase isoform X3 [Cucumis sativus] >XP_011660147.1 glucan endo-1,3-beta-glucosidase isoform X3 [Cucumis sativus] >XP_011660148.1 glucan endo-1,3-beta-glucosidase isoform X3 [Cucumis sativus] >KAE8653517.1 hypothetical protein Csa_007014 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 1  MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPT 43
          MAMAIN NN+ EDSMALFPFGS +GFGSFGSGCYHP LPSPT
Sbjct: 3  MAMAINNNNEHEDSMALFPFGSFNGFGSFGSGCYHPRLPSPT 44

[Close]
BLAST of MELO3C029493 vs. NCBI nr
Match: XP_031736966.1 (glucan endo-1,3-beta-glucosidase isoform X1 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 1  MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPT 43
          MAMAIN NN+ EDSMALFPFGS +GFGSFGSGCYHP LPSPT
Sbjct: 38 MAMAINNNNEHEDSMALFPFGSFNGFGSFGSGCYHPRLPSPT 79

[Close]
BLAST of MELO3C029493 vs. NCBI nr
Match: XP_031736967.1 (glucan endo-1,3-beta-glucosidase isoform X2 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 1  MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPT 43
          MAMAIN NN+ EDSMALFPFGS +GFGSFGSGCYHP LPSPT
Sbjct: 37 MAMAINNNNEHEDSMALFPFGSFNGFGSFGSGCYHPRLPSPT 78

[Close]
BLAST of MELO3C029493 vs. ExPASy TrEMBL
Match: A0A5A7VPQ8 ((1->3)-beta-glucan endohydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00120 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.2e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0 

Query: 1  MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPT 43
          MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPT
Sbjct: 1  MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPT 42

[Close]
BLAST of MELO3C029493 vs. ExPASy TrEMBL
Match: A0A5D3D5V2 ((1->3)-beta-glucan endohydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001280 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.2e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0 

Query: 1  MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPT 43
          MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPT
Sbjct: 1  MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPT 42

[Close]
BLAST of MELO3C029493 vs. ExPASy TrEMBL
Match: A0A1S4DYT0 ((1->3)-beta-glucan endohydrolase OS=Cucumis melo OX=3656 GN=LOC103492011 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.2e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0 

Query: 1  MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPT 43
          MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPT
Sbjct: 1  MAMAINYNNDDEDSMALFPFGSSSGFGSFGSGCYHPHLPSPT 42

The following BLAST results are available for this feature:
BLAST of MELO3C029493 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK18912.18.6e-16100.00glucan endo-1,3-beta-glucosidase-like [Cucumis melo var. makuwa][more]
XP_016900880.18.6e-16100.00PREDICTED: glucan endo-1,3-beta-glucosidase-like [Cucumis melo] >KAA0067209.1 gl... [more]
XP_011660145.11.7e-1185.71glucan endo-1,3-beta-glucosidase isoform X3 [Cucumis sativus] >XP_011660146.1 gl... [more]
XP_031736966.11.7e-1185.71glucan endo-1,3-beta-glucosidase isoform X1 [Cucumis sativus][more]
XP_031736967.11.7e-1185.71glucan endo-1,3-beta-glucosidase isoform X2 [Cucumis sativus][more]
BLAST of MELO3C029493 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029493 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VPQ84.2e-16100.00(1->3)-beta-glucan endohydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5D3D5V24.2e-16100.00(1->3)-beta-glucan endohydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S4DYT04.2e-16100.00(1->3)-beta-glucan endohydrolase OS=Cucumis melo OX=3656 GN=LOC103492011 PE=3 SV... [more]
BLAST of MELO3C029493 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029493.1MELO3C029493.1mRNA