MELO3C029480 (gene) Melon (DHL92) v4

Overview
NameMELO3C029480
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGlial fibrillary acidic protein-like
Locationchr10: 18600673 .. 18600900 (-)
RNA-Seq ExpressionMELO3C029480
SyntenyMELO3C029480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAATTGTCTTTTGGCAATAGAGAACGAAAAGTTGAGAGAAGAAGTCAAGAAATGGGTCCAGCTAACTGTTAATACTCAAAGAGATTTGGATGAGACGAAACGAAAGCAATTGGAGCAGGAGAAGAATAACGATTCTTTAAATACTAAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAACATTGTCGACTTGCATGAAGAGACAGAAGCTAAAAAG

mRNA sequence

ATAAATTGTCTTTTGGCAATAGAGAACGAAAAGTTGAGAGAAGAAGTCAAGAAATGGGTCCAGCTAACTGTTAATACTCAAAGAGATTTGGATGAGACGAAACGAAAGCAATTGGAGCAGGAGAAGAATAACGATTCTTTAAATACTAAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAACATTGTCGACTTGCATGAAGAGACAGAAGCTAAAAAG

Coding sequence (CDS)

ATAAATTGTCTTTTGGCAATAGAGAACGAAAAGTTGAGAGAAGAAGTCAAGAAATGGGTCCAGCTAACTGTTAATACTCAAAGAGATTTGGATGAGACGAAACGAAAGCAATTGGAGCAGGAGAAGAATAACGATTCTTTAAATACTAAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAACATTGTCGACTTGCATGAAGAGACAGAAGCTAAAAAG

Protein sequence

INCLLAIENEKLREEVKKWVQLTVNTQRDLDETKRKQLEQEKNNDSLNTKAIQVRKKNKRLLRNIVDLHEETEAKK
Homology
BLAST of MELO3C029480 vs. NCBI nr
Match: TYK28968.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 2.5e-30
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0

Query: 1   INCLLAIENEKLREEVKKWVQLTVNTQRDLDETKRKQLEQEKNNDSLNTKAIQVRKKNKR 60
           INCLLAIENEKLREEVKKWVQLTVNTQRDLDETKRKQLEQEKNNDSLNTKAIQVRKKNKR
Sbjct: 28  INCLLAIENEKLREEVKKWVQLTVNTQRDLDETKRKQLEQEKNNDSLNTKAIQVRKKNKR 87

Query: 61  LLRNIVDLHEETEAKK 77
           LLRNIVDLHEETEAKK
Sbjct: 88  LLRNIVDLHEETEAKK 103

BLAST of MELO3C029480 vs. NCBI nr
Match: KAA0049672.1 (uncharacterized protein E6C27_scaffold76G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 1.3e-23
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0

Query: 1  INCLLAIENEKLREEVKKWVQLTVNTQRDLDETKRKQLEQEKNNDSLNTKAIQVRKKNKR 60
          +NC+LA ENEKLREEVKKWVQ  VNTQRDLDE KRK+LE EK NDSLNT+AIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIVDLHEETEAKK 77
          LLRNI DLHEE EAKK
Sbjct: 61 LLRNIADLHEEMEAKK 76

BLAST of MELO3C029480 vs. NCBI nr
Match: TYK12200.1 (uncharacterized protein E5676_scaffold106G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 1.3e-23
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0

Query: 1  INCLLAIENEKLREEVKKWVQLTVNTQRDLDETKRKQLEQEKNNDSLNTKAIQVRKKNKR 60
          +NC+LA ENEKLREEVKKWVQ  VNTQRDLDE KRK+LE EK NDSLNT+AIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIVDLHEETEAKK 77
          LLRNI DLHEE EAKK
Sbjct: 61 LLRNIADLHEEMEAKK 76

BLAST of MELO3C029480 vs. NCBI nr
Match: KAA0041903.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK17835.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 2.3e-23
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0

Query: 1  INCLLAIENEKLREEVKKWVQLTVNTQRDLDETKRKQLEQEKNNDSLNTKAIQVRKKNKR 60
          +NC+LA ENEKLREEVKKWVQ  VNTQR LD+ KRKQLE EKNNDSLNT+AIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRALDKAKRKQLELEKNNDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIVDLHEETEAKK 77
          LLRNI DLHEE EAKK
Sbjct: 61 LLRNIADLHEEMEAKK 76

BLAST of MELO3C029480 vs. NCBI nr
Match: TYK02650.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 3.9e-23
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0

Query: 1  INCLLAIENEKLREEVKKWVQLTVNTQRDLDETKRKQLEQEKNNDSLNTKAIQVRKKNKR 60
          +NC+LA ENEKLREEVKKWVQ  V TQRDLDE KRKQLE EK NDSLNT+AIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKRKQLELEKENDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIVDLHEETEAKK 77
          LLRNI +LHEETEAKK
Sbjct: 61 LLRNIANLHEETEAKK 76

BLAST of MELO3C029480 vs. ExPASy TrEMBL
Match: A0A5D3DZT4 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00640 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0

Query: 1   INCLLAIENEKLREEVKKWVQLTVNTQRDLDETKRKQLEQEKNNDSLNTKAIQVRKKNKR 60
           INCLLAIENEKLREEVKKWVQLTVNTQRDLDETKRKQLEQEKNNDSLNTKAIQVRKKNKR
Sbjct: 28  INCLLAIENEKLREEVKKWVQLTVNTQRDLDETKRKQLEQEKNNDSLNTKAIQVRKKNKR 87

Query: 61  LLRNIVDLHEETEAKK 77
           LLRNIVDLHEETEAKK
Sbjct: 88  LLRNIVDLHEETEAKK 103

BLAST of MELO3C029480 vs. ExPASy TrEMBL
Match: A0A5A7U1L8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00070 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.5e-24
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0

Query: 1  INCLLAIENEKLREEVKKWVQLTVNTQRDLDETKRKQLEQEKNNDSLNTKAIQVRKKNKR 60
          +NC+LA ENEKLREEVKKWVQ  VNTQRDLDE KRK+LE EK NDSLNT+AIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIVDLHEETEAKK 77
          LLRNI DLHEE EAKK
Sbjct: 61 LLRNIADLHEEMEAKK 76

BLAST of MELO3C029480 vs. ExPASy TrEMBL
Match: A0A5D3CLA9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001510 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.5e-24
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0

Query: 1  INCLLAIENEKLREEVKKWVQLTVNTQRDLDETKRKQLEQEKNNDSLNTKAIQVRKKNKR 60
          +NC+LA ENEKLREEVKKWVQ  VNTQRDLDE KRK+LE EK NDSLNT+AIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIVDLHEETEAKK 77
          LLRNI DLHEE EAKK
Sbjct: 61 LLRNIADLHEEMEAKK 76

BLAST of MELO3C029480 vs. ExPASy TrEMBL
Match: A0A5A7TFC7 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00940 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0

Query: 1  INCLLAIENEKLREEVKKWVQLTVNTQRDLDETKRKQLEQEKNNDSLNTKAIQVRKKNKR 60
          +NC+LA ENEKLREEVKKWVQ  VNTQR LD+ KRKQLE EKNNDSLNT+AIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRALDKAKRKQLELEKNNDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIVDLHEETEAKK 77
          LLRNI DLHEE EAKK
Sbjct: 61 LLRNIADLHEEMEAKK 76

BLAST of MELO3C029480 vs. ExPASy TrEMBL
Match: A0A5D3BU47 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00620 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.9e-23
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0

Query: 1  INCLLAIENEKLREEVKKWVQLTVNTQRDLDETKRKQLEQEKNNDSLNTKAIQVRKKNKR 60
          +NC+LA ENEKLREEVKKWVQ  V TQRDLDE KRKQLE EK NDSLNT+AIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKRKQLELEKENDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIVDLHEETEAKK 77
          LLRNI +LHEETEAKK
Sbjct: 61 LLRNIANLHEETEAKK 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK28968.12.5e-30100.00glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0049672.11.3e-2384.21uncharacterized protein E6C27_scaffold76G00070 [Cucumis melo var. makuwa][more]
TYK12200.11.3e-2384.21uncharacterized protein E5676_scaffold106G001510 [Cucumis melo var. makuwa][more]
KAA0041903.12.3e-2384.21glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK17835.1 glia... [more]
TYK02650.13.9e-2384.21glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DZT41.2e-30100.00Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7U1L86.5e-2484.21Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3CLA96.5e-2484.21Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7TFC71.1e-2384.21Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3BU471.9e-2384.21Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 30..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029480.1MELO3C029480.1mRNA