MELO3C029328 (gene) Melon (DHL92) v4

Overview
NameMELO3C029328
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionBeta-galactosidase
Locationchr02: 1984151 .. 1986475 (+)
RNA-Seq ExpressionMELO3C029328
SyntenyMELO3C029328
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGAGTGCGATCAAAGTACCACGTTGGCTAGAACAAGGATGATATATGGTATGTAAATGAAGAGAATTATTTTCAATGGCATGAGGTCATTTGGGTGAAACAAAAAACAAATCAAGAATTATGCCCAAAATGGATAATGTCGTACCTTGGAGAGATATATTGGAAAGATTGCCACAATGTAATTAATATTATTAGGGCATGAAGATTATGAAATCTATATTTAATGGTTGTTATGAGGCAGGATTTGATAATCTTTCCACTGTACTACCATTCGTGATGAAAATGGAAAGCCATGAGAAATTGAGTACGAATGTGTTGCAAAGCCACAAGCTTTTTCTCTAGGAGGCTCCATGTTTTTAATGAAACTTAGGGTGGAATTAGTTTTCATAATTCTAATATGTGTTCTAGCTTCCAGCAAAAGAGAGTCAACTTGACCATCAGTAAAGAAGAGTCCTCTGTATGCTTGTTCAATAGAAGTCCTCCAGTTATATGAACCTTCCACCTTTAATTGTGAGCAAGGGTTTGGAGGATCCCAAAATAACTTTCAGCAAATATGTTAATCTCAAGGAAGGAGTTAACAAGCTTTCCATGTTGAGTGTTACTGTCGGTCTTCCGATTAGTTCATTCGTTTCTATAGTTCTTGTTATTGATTATGTAACCAACTTACCTTTCCATTTGTTTTATGTCAGAATGTTGGCCTGCATTTTGATACTTGAAATGCTGGTGTTTTAGGCCCTGTCACATTGAAGGGTCTGAACGAGGGCACTCGAGACATGTCTAAATATAAATGGTCTTACAAGGTACATTACCAAATCGACTTACCCTCAACTTGCACTTTCTGTTTGTTTTTTCTATATTCTTGAAAAACAGTAGTAATGCTTTTAGAAGCTTCAGAATCTCAATTAGAATGTTCCTGAGCAGGTTGGTTTGAGGGGAGAAATCTTGAATCTTTATTCTATTAAAGGAAGTAATTCTGTGCAATGGACGAAAGGCTCATTGGTTCAAAAGCAACCTCTCACATGGTACAAGGTGAGAAAACTCCATCTTTAATTTCAAACTAACATTCTTTAATTTCTACATCTTTTTCTATGGTGAAAAAACTCCACCTTTCGAATCTACAGACCACTTTCAATACTCCGACTGGCAACGAACCATTGGCTTTAGACATGAGCAGCATGAGTAAAGGTCAAATATGGGTTAACGGTCGGAGCATTGGCCGCTATTTTCCTGGATATATTGCAAATGGCAAGTGTAACAAATGCAGTTATACTGGATTCTTTACTGAGAAGAAATGTTTGTGGAACTGTGGTGGACCCTCTCAGAAATGGTAAAATTAATTACCATTGCACACTGATTTAATACATGTTCGGCAAAATCACTCTAAAACATGTCTTTAATCATTCAAAATCAATCGAAGGTTTACGTTTAGACTTTTACATACAATTATCATTTTGTCAAAATTGATTTTGAAGGATTACATATAAGTTTCGGAGCGATTTTGACCATTTTAAGATCATTCCTAATTAAGCATGGCCTCGAAAGTTTTTGTCTGGCTATCACCATTGATTAATAAACATTTCAAAATCTCAGGTATCACATTCCCCGCGACTGGTTAAGTCCAAATGGCAACTTGTTGATAATTTTTGAAGAAATTGGTGGGAATCCCGGAGGGATTTCTTTGGTTAAGAGGACTGCATTCTGATGGTGATATCACAATGAAGCTTTTTGTCGAGGCTGCCCTGCAACTAATGATGGAGTTTATGCTAAATTCACACACAGTGATGAAGTTTGTTAATATACATAAAAATTAATTACCATTGCACACTGATTTAGTACATGTTCGGTAAAATCACTCTAAAACATGTCTTTAATCGTTCAAAATCAATTGAAGGTTTACGTTTAGACTTTTACATACAATTATCATTTTGTCAAAATTGATTTTGAAGGATTACAGATAAGTTTCGGAGCGATTTTGACCATTTTAAGATCATTCCTAATTAAGCATAGCCTTGAAAGTTTTTGTGTGGCTATTACCATTGATTGATAAACATTTAAAAATCTGAGGTATCACATTCCCCGCGACTGGTTAAGTCTAAATGGCAACTTGTTGATAATTTTTGAAGAAATTTGTAAGAATCCTGGAGGGATTTCTTTTGTTAAGAGGACTGCATTCTGATAGTGATATCACAATGAAGCTTTGTGTTGAGGCTGCCCTATGTCACAATCGTAACCTTTCAAACACGATTGTGCGGCACTTGTTCTACTCGGTCAATAAGTCAGCCGCTCAATATTCAAAATTCGTGGACAAACTTGCGGTATGA

mRNA sequence

ATGTTGGAGTGCGATCAAAGTACCACGTTGGCTAGAACAAGGATGATATATGGCCCTGTCACATTGAAGGGTCTGAACGAGGGCACTCGAGACATGTCTAAATATAAATGGTCTTACAAGAAATTTGTAAGAATCCTGGAGGGATTTCTTTTGTTAAGAGGACTGCATTCTGATAGTGATATCACAATGAAGCTTTGTGTTGAGGCTGCCCTATGTCACAATCGTAACCTTTCAAACACGATTGTGCGGCACTTGTTCTACTCGGTCAATAAGTCAGCCGCTCAATATTCAAAATTCGTGGACAAACTTGCGGTATGA

Coding sequence (CDS)

ATGTTGGAGTGCGATCAAAGTACCACGTTGGCTAGAACAAGGATGATATATGGCCCTGTCACATTGAAGGGTCTGAACGAGGGCACTCGAGACATGTCTAAATATAAATGGTCTTACAAGAAATTTGTAAGAATCCTGGAGGGATTTCTTTTGTTAAGAGGACTGCATTCTGATAGTGATATCACAATGAAGCTTTGTGTTGAGGCTGCCCTATGTCACAATCGTAACCTTTCAAACACGATTGTGCGGCACTTGTTCTACTCGGTCAATAAGTCAGCCGCTCAATATTCAAAATTCGTGGACAAACTTGCGGTATGA

Protein sequence

MLECDQSTTLARTRMIYGPVTLKGLNEGTRDMSKYKWSYKKFVRILEGFLLLRGLHSDSDITMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKLAV
Homology
[Close]
BLAST of MELO3C029328 vs. NCBI nr
Match: TYK10092.1 (beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 3.5e-14
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0 

Query: 1  MLECDQSTTLARTRMIYGPVTLKGLNEGTRDMSKYKWSYKKFVR 45
          MLECDQSTTLARTRMIYGPVTLKGLNEGTRDMSKYKWSYK  +R
Sbjct: 1  MLECDQSTTLARTRMIYGPVTLKGLNEGTRDMSKYKWSYKVGLR 44

[Close]
BLAST of MELO3C029328 vs. NCBI nr
Match: KAA0036728.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-05
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 62  TMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKLAV 106
           T KL  + A CHN NLSNTIVRHLF S+NKS  QYS+ VDKLAV
Sbjct: 165 TQKLS-KGATCHNCNLSNTIVRHLFCSINKSVVQYSELVDKLAV 207

[Close]
BLAST of MELO3C029328 vs. NCBI nr
Match: TYK07339.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 5.1e-05
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 62  TMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKLAV 106
           T KL  + A CHN NLSNTI +HLF  +NKSA QYS+FVDKLAV
Sbjct: 165 TQKLS-KGATCHNCNLSNTIAQHLFCLINKSAVQYSEFVDKLAV 207

[Close]
BLAST of MELO3C029328 vs. NCBI nr
Match: XP_008453893.1 (PREDICTED: uncharacterized protein LOC103494475 isoform X1 [Cucumis melo] >XP_008453894.1 PREDICTED: uncharacterized protein LOC103494475 isoform X1 [Cucumis melo] >XP_016901578.1 PREDICTED: uncharacterized protein LOC103494475 isoform X1 [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 8.7e-05
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 60  DITMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKL 104
           +++ +  +  A CHNRN SNTIVRHLF S+NKSA Q SKF DKL
Sbjct: 19  EMSSRRTIGTARCHNRNSSNTIVRHLFSSINKSALQNSKFADKL 62

[Close]
BLAST of MELO3C029328 vs. NCBI nr
Match: XP_016901580.1 (PREDICTED: uncharacterized protein LOC103494475 isoform X3 [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 8.7e-05
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 60  DITMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKL 104
           +++ +  +  A CHNRN SNTIVRHLF S+NKSA Q SKF DKL
Sbjct: 19  EMSSRRTIGTARCHNRNSSNTIVRHLFSSINKSALQNSKFADKL 62

[Close]
BLAST of MELO3C029328 vs. ExPASy Swiss-Prot
Match: Q9LFA6 (Beta-galactosidase 2 OS=Arabidopsis thaliana OX=3702 GN=BGAL2 PE=2 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYK 41
           I GPVTLKG+N GT DMSK+KWSYK
Sbjct: 561 ILGPVTLKGVNSGTWDMSKWKWSYK 585

[Close]
BLAST of MELO3C029328 vs. ExPASy Swiss-Prot
Match: Q9SCV8 (Beta-galactosidase 4 OS=Arabidopsis thaliana OX=3702 GN=BGAL4 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-04
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYK 41
           + GPVTLKG+N GT DMSK+KWSYK
Sbjct: 561 VLGPVTLKGVNSGTWDMSKWKWSYK 585

[Close]
BLAST of MELO3C029328 vs. ExPASy TrEMBL
Match: A0A5D3CFR8 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002320 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.7e-14
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0 

Query: 1  MLECDQSTTLARTRMIYGPVTLKGLNEGTRDMSKYKWSYKKFVR 45
          MLECDQSTTLARTRMIYGPVTLKGLNEGTRDMSKYKWSYK  +R
Sbjct: 1  MLECDQSTTLARTRMIYGPVTLKGLNEGTRDMSKYKWSYKVGLR 44

[Close]
BLAST of MELO3C029328 vs. ExPASy TrEMBL
Match: A0A5A7T1U2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1244G00130 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.5e-06
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 62  TMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKLAV 106
           T KL  + A CHN NLSNTIVRHLF S+NKS  QYS+ VDKLAV
Sbjct: 165 TQKLS-KGATCHNCNLSNTIVRHLFCSINKSVVQYSELVDKLAV 207

[Close]
BLAST of MELO3C029328 vs. ExPASy TrEMBL
Match: A0A5D3CAK3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00550 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.5e-05
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 62  TMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKLAV 106
           T KL  + A CHN NLSNTI +HLF  +NKSA QYS+FVDKLAV
Sbjct: 165 TQKLS-KGATCHNCNLSNTIAQHLFCLINKSAVQYSEFVDKLAV 207

[Close]
BLAST of MELO3C029328 vs. ExPASy TrEMBL
Match: A0A1S3BXB5 (uncharacterized protein LOC103494475 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494475 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.2e-05
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 60  DITMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKL 104
           +++ +  +  A CHNRN SNTIVRHLF S+NKSA Q SKF DKL
Sbjct: 19  EMSSRRTIGTARCHNRNSSNTIVRHLFSSINKSALQNSKFADKL 62

[Close]
BLAST of MELO3C029328 vs. ExPASy TrEMBL
Match: A0A1S4E0T1 (uncharacterized protein LOC103494475 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103494475 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.2e-05
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 60  DITMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKL 104
           +++ +  +  A CHNRN SNTIVRHLF S+NKSA Q SKF DKL
Sbjct: 19  EMSSRRTIGTARCHNRNSSNTIVRHLFSSINKSALQNSKFADKL 62

[Close]
BLAST of MELO3C029328 vs. TAIR 10
Match: AT3G52840.1 (beta-galactosidase 2 )

HSP 1 Score: 47.4 bits (111), Expect = 8.4e-06
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYK 41
           I GPVTLKG+N GT DMSK+KWSYK
Sbjct: 561 ILGPVTLKGVNSGTWDMSKWKWSYK 585

[Close]
BLAST of MELO3C029328 vs. TAIR 10
Match: AT5G56870.1 (beta-galactosidase 4 )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYK 41
           + GPVTLKG+N GT DMSK+KWSYK
Sbjct: 561 VLGPVTLKGVNSGTWDMSKWKWSYK 585

[Close]
BLAST of MELO3C029328 vs. TAIR 10
Match: AT4G26140.1 (beta-galactosidase 12 )

HSP 1 Score: 43.9 bits (102), Expect = 9.3e-05
Identity = 17/25 (68.00%), Postives = 21/25 (84.00%), Query Frame = 0 

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYK 41
           + GPVTL G+N GT DM+K+KWSYK
Sbjct: 562 VLGPVTLNGVNSGTWDMTKWKWSYK 586

[Close]
BLAST of MELO3C029328 vs. TAIR 10
Match: AT4G26140.2 (beta-galactosidase 12 )

HSP 1 Score: 43.9 bits (102), Expect = 9.3e-05
Identity = 17/25 (68.00%), Postives = 21/25 (84.00%), Query Frame = 0 

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYK 41
           + GPVTL G+N GT DM+K+KWSYK
Sbjct: 560 VLGPVTLNGVNSGTWDMTKWKWSYK 584

The following BLAST results are available for this feature:
BLAST of MELO3C029328 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK10092.13.5e-1493.18beta-galactosidase [Cucumis melo var. makuwa][more]
KAA0036728.11.8e-0570.45ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK07339.15.1e-0568.18ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
XP_008453893.18.7e-0561.36PREDICTED: uncharacterized protein LOC103494475 isoform X1 [Cucumis melo] >XP_00... [more]
XP_016901580.18.7e-0561.36PREDICTED: uncharacterized protein LOC103494475 isoform X3 [Cucumis melo][more]
BLAST of MELO3C029328 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LFA61.2e-0480.00Beta-galactosidase 2 OS=Arabidopsis thaliana OX=3702 GN=BGAL2 PE=2 SV=2[more]
Q9SCV81.5e-0476.00Beta-galactosidase 4 OS=Arabidopsis thaliana OX=3702 GN=BGAL4 PE=1 SV=1[more]
BLAST of MELO3C029328 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CFR81.7e-1493.18Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00... [more]
A0A5A7T1U28.5e-0670.45Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3CAK32.5e-0568.18Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A1S3BXB54.2e-0561.36uncharacterized protein LOC103494475 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E0T14.2e-0561.36uncharacterized protein LOC103494475 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of MELO3C029328 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G52840.18.4e-0680.00beta-galactosidase 2 [more]
AT5G56870.11.1e-0576.00beta-galactosidase 4 [more]
AT4G26140.19.3e-0568.00beta-galactosidase 12 [more]
AT4G26140.29.3e-0568.00beta-galactosidase 12 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029328.1MELO3C029328.1mRNA