MELO3C029286.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C029286.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Glycine-rich protein family
Location	chr02: 524862 .. 525698 (-)
RNA-Seq Expression	MELO3C029286.jh1
Synteny	MELO3C029286.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTACATTTTCTTCACCATTTTCCAACTTCTGGGTTGGCCCAACTTCCAACTGCCATTCCCAATCCCATCATCATCATCATCTCATTCCATCTATTCACATAAATATATCATCTCCCCTTTCTTTCTTGGTTAATTTTCCTCACCCTCCCTTTCAGTCCAATGGCTTCCCCAATTACCTTCCTCCCCGTTGTTCTTGCTCTTGTTGTCTCGCTCCGCTGTCCCTCAGGTCATCTCCATGTCGTTTGGGAACTCGAACCCGACACGCTTTTCCCCCCATTTTATTTTTCGTTTTCTTAATCGAAAGTTTGATATATATCGGTTTATTTGAAGAAAAGAAGATGGTTTTAACTTTTAAGTAATTCTCATGATATGATCTATTTGTGTTGTATTTTCTGTATTGTGACAGTTAATGGTGATCAAGAGATTCCTGGACAAATGGTGGTTGAATCCTTCAAATGCTTTGACAATAAGTTTGTGAGTTTTTCTTATCCCTTTTCCTCTTTCTTATAATGAGTTTCATCATGTTTTGTTTATATGATTTTTTTATGTTTGTTAGATATACAATGGTTGTGAAAGTGCTTATAGATTGAACCCAAGTGGGAGTTTCAATGTCCCTCCTGAGGCTACTAACCTATTTTGCAATGGACCATGTTTGATCGAAACACAACTTTTGCTCAACTGCCTTGACAACAGTTTTCATAACTTCTTGTTCTACAACAAAGCCACCGCACAAAGCGTTCGAAACGCCCTTCGTATTGGCTGCAGCTTCTCAAGCCAAAGAGGTAGGCCATACGTTGTTGGTCAGCTACCTACCTTGTTAACTCAGAGAAAATGA

mRNA sequence

CTCTACATTTTCTTCACCATTTTCCAACTTCTGGGTTGGCCCAACTTCCAACTGCCATTCCCAATCCCATCATCATCATCATCTCATTCCATCTATTCACATAAATATATCATCTCCCCTTTCTTTCTTGGTTAATTTTCCTCACCCTCCCTTTCAGTCCAATGGCTTCCCCAATTACCTTCCTCCCCGTTGTTCTTGCTCTTGTTGTCTCGCTCCGCTGTCCCTCAGTTAATGGTGATCAAGAGATTCCTGGACAAATGGTGGTTGAATCCTTCAAATGCTTTGACAATAAGTTTATATACAATGGTTGTGAAAGTGCTTATAGATTGAACCCAAGTGGGAGTTTCAATGTCCCTCCTGAGGCTACTAACCTATTTTGCAATGGACCATGTTTGATCGAAACACAACTTTTGCTCAACTGCCTTGACAACAGTTTTCATAACTTCTTGTTCTACAACAAAGCCACCGCACAAAGCGTTCGAAACGCCCTTCGTATTGGCTGCAGCTTCTCAAGCCAAAGAGGTAGGCCATACGTTGTTGGTCAGCTACCTACCTTGTTAACTCAGAGAAAATGA

Coding sequence (CDS)

ATGGCTTCCCCAATTACCTTCCTCCCCGTTGTTCTTGCTCTTGTTGTCTCGCTCCGCTGTCCCTCAGTTAATGGTGATCAAGAGATTCCTGGACAAATGGTGGTTGAATCCTTCAAATGCTTTGACAATAAGTTTATATACAATGGTTGTGAAAGTGCTTATAGATTGAACCCAAGTGGGAGTTTCAATGTCCCTCCTGAGGCTACTAACCTATTTTGCAATGGACCATGTTTGATCGAAACACAACTTTTGCTCAACTGCCTTGACAACAGTTTTCATAACTTCTTGTTCTACAACAAAGCCACCGCACAAAGCGTTCGAAACGCCCTTCGTATTGGCTGCAGCTTCTCAAGCCAAAGAGGTAGGCCATACGTTGTTGGTCAGCTACCTACCTTGTTAACTCAGAGAAAATGA

Protein sequence

MASPITFLPVVLALVVSLRCPSVNGDQEIPGQMVVESFKCFDNKFIYNGCESAYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQRGRPYVVGQLPTLLTQRK

Homology

[Close]

BLAST of MELO3C029286.jh1 vs. NCBI nr
Match: KAA0050947.1 (uncharacterized protein E6C27_scaffold761G00740 [Cucumis melo var. makuwa] >TYK10294.1 uncharacterized protein E5676_scaffold16G004450 [Cucumis melo var. makuwa])

HSP 1 Score: 276 bits (706), Expect = 1.39e-93
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MASPITFLPVVLALVVSLRCPSVNGDQEIPGQMVVESFKCFDNKFIYNGCESAYRLNPSG 60
           MASPI+FLPVVLALVVSLRCPSVNGDQEI GQMVVESFKCFDNKFIYNGCESAYRLNPSG
Sbjct: 1   MASPISFLPVVLALVVSLRCPSVNGDQEISGQMVVESFKCFDNKFIYNGCESAYRLNPSG 60

Query: 61  SFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQR 120
           SFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQR
Sbjct: 61  SFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQR 120

Query: 121 GRPYVVGQLPTLLTQRK 137
           GRPYVVGQL TLLTQRK
Sbjct: 121 GRPYVVGQLHTLLTQRK 137

[Close]

BLAST of MELO3C029286.jh1 vs. NCBI nr
Match: XP_008450550.1 (PREDICTED: uncharacterized protein LOC103492117 [Cucumis melo])

HSP 1 Score: 248 bits (633), Expect = 4.10e-82
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MASPITFLPVVLALVVSLRCPSVNGDQEIPGQMVVESFKCFDNKFIYNGCESAYRLNPSG 60
           MASPI+FLPVVLALVVSLRCPSVNGDQEI GQMVVESFKCFDNKFIYNGCESAYRLNPSG
Sbjct: 1   MASPISFLPVVLALVVSLRCPSVNGDQEISGQMVVESFKCFDNKFIYNGCESAYRLNPSG 60

Query: 61  SFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQR 120
           SFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQR
Sbjct: 61  SFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQR 120

[Close]

BLAST of MELO3C029286.jh1 vs. NCBI nr
Match: XP_031736077.1 (uncharacterized protein LOC101204762 [Cucumis sativus])

HSP 1 Score: 227 bits (578), Expect = 1.05e-73
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MASPITFLPVVLALVVSLRCPSV-NGDQEIPGQMVVESFKCFDNKFIYNGCESAYRLNPS 60
           MASPI+FLP+ LAL V LRCPSV + DQEIPGQMVVE FKCFDNKFIYNGCE AYRLNPS
Sbjct: 1   MASPISFLPIALALAVLLRCPSVYSDDQEIPGQMVVEGFKCFDNKFIYNGCERAYRLNPS 60

Query: 61  GSFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQ 120
           GSFNVPPEATNLFCNGPCLIETQLLLNCLDN+F NFLFYNKATAQSVRNALR+GCS+SSQ
Sbjct: 61  GSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRVGCSYSSQ 120

[Close]

BLAST of MELO3C029286.jh1 vs. NCBI nr
Match: XP_022158829.1 (uncharacterized protein LOC111025289 [Momordica charantia])

HSP 1 Score: 190 bits (483), Expect = 2.54e-59
Identity = 91/121 (75.21%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MASPITFLPVVLALVVSLRCPSVNGDQEIPGQMVVESFKCFDNKFIYNGCESAYRLNPSG 60
           MA P TFLP++LAL VSL  PSV  + EIPGQ+V E+ +CFDNKFIYNGC+S YRLNPSG
Sbjct: 1   MAFP-TFLPILLALAVSLPTPSVCAE-EIPGQVVTEALRCFDNKFIYNGCDSGYRLNPSG 60

Query: 61  SFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQR 120
           SFNVPPEATNLFC+GPCL+ET+L+L+CLD++F NFLFYNKA AQ+VRNALR GCS+SSQR
Sbjct: 61  SFNVPPEATNLFCSGPCLVETRLVLDCLDDAFGNFLFYNKAMAQNVRNALRAGCSYSSQR 119

[Close]

BLAST of MELO3C029286.jh1 vs. NCBI nr
Match: KAE8653344.1 (hypothetical protein Csa_007318 [Cucumis sativus])

HSP 1 Score: 182 bits (463), Expect = 1.18e-56
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 33  MVVESFKCFDNKFIYNGCESAYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNSF 92
           MVVE FKCFDNKFIYNGCE AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDN+F
Sbjct: 1   MVVEGFKCFDNKFIYNGCERAYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTF 60

Query: 93  HNFLFYNKATAQSVRNALRIGCSFSSQRG 121
            NFLFYNKATAQSVRNALR+GCS+SSQRG
Sbjct: 61  QNFLFYNKATAQSVRNALRVGCSYSSQRG 89

[Close]

BLAST of MELO3C029286.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U972 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004450 PE=4 SV=1)

HSP 1 Score: 276 bits (706), Expect = 6.73e-94
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MASPITFLPVVLALVVSLRCPSVNGDQEIPGQMVVESFKCFDNKFIYNGCESAYRLNPSG 60
           MASPI+FLPVVLALVVSLRCPSVNGDQEI GQMVVESFKCFDNKFIYNGCESAYRLNPSG
Sbjct: 1   MASPISFLPVVLALVVSLRCPSVNGDQEISGQMVVESFKCFDNKFIYNGCESAYRLNPSG 60

Query: 61  SFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQR 120
           SFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQR
Sbjct: 61  SFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQR 120

Query: 121 GRPYVVGQLPTLLTQRK 137
           GRPYVVGQL TLLTQRK
Sbjct: 121 GRPYVVGQLHTLLTQRK 137

[Close]

BLAST of MELO3C029286.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BPH6 (uncharacterized protein LOC103492117 OS=Cucumis melo OX=3656 GN=LOC103492117 PE=4 SV=1)

HSP 1 Score: 248 bits (633), Expect = 1.98e-82
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MASPITFLPVVLALVVSLRCPSVNGDQEIPGQMVVESFKCFDNKFIYNGCESAYRLNPSG 60
           MASPI+FLPVVLALVVSLRCPSVNGDQEI GQMVVESFKCFDNKFIYNGCESAYRLNPSG
Sbjct: 1   MASPISFLPVVLALVVSLRCPSVNGDQEISGQMVVESFKCFDNKFIYNGCESAYRLNPSG 60

Query: 61  SFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQR 120
           SFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQR
Sbjct: 61  SFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQR 120

[Close]

BLAST of MELO3C029286.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LYD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561940 PE=4 SV=1)

HSP 1 Score: 220 bits (560), Expect = 3.55e-71
Identity = 106/129 (82.17%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 1   MASPITFLPVVLALVVSLRCPS--------VNGDQEIPGQMVVESFKCFDNKFIYNGCES 60
           MASPI+FLP+ LAL V LRCPS        +  D EIPGQMVVE FKCFDNKFIYNGCE 
Sbjct: 1   MASPISFLPIALALAVLLRCPSGHLHVIRELKPDTEIPGQMVVEGFKCFDNKFIYNGCER 60

Query: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRI 120
           AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDN+F NFLFYNKATAQSVRNALR+
Sbjct: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRV 120

[Close]

BLAST of MELO3C029286.jh1 vs. ExPASy TrEMBL
Match: A0A6J1E0J9 (uncharacterized protein LOC111025289 OS=Momordica charantia OX=3673 GN=LOC111025289 PE=4 SV=1)

HSP 1 Score: 190 bits (483), Expect = 1.23e-59
Identity = 91/121 (75.21%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MASPITFLPVVLALVVSLRCPSVNGDQEIPGQMVVESFKCFDNKFIYNGCESAYRLNPSG 60
           MA P TFLP++LAL VSL  PSV  + EIPGQ+V E+ +CFDNKFIYNGC+S YRLNPSG
Sbjct: 1   MAFP-TFLPILLALAVSLPTPSVCAE-EIPGQVVTEALRCFDNKFIYNGCDSGYRLNPSG 60

Query: 61  SFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQR 120
           SFNVPPEATNLFC+GPCL+ET+L+L+CLD++F NFLFYNKA AQ+VRNALR GCS+SSQR
Sbjct: 61  SFNVPPEATNLFCSGPCLVETRLVLDCLDDAFGNFLFYNKAMAQNVRNALRAGCSYSSQR 119

[Close]

BLAST of MELO3C029286.jh1 vs. ExPASy TrEMBL
Match: A0A6J1EZD6 (uncharacterized protein LOC111437811 OS=Cucurbita moschata OX=3662 GN=LOC111437811 PE=4 SV=1)

HSP 1 Score: 170 bits (430), Expect = 1.29e-51
Identity = 83/121 (68.60%), Postives = 99/121 (81.82%), Query Frame = 0


Query: 1   MASPITFLPVVLALVVSLRCPSVNGDQEIPGQMVVESFKCFDNKFIYNGCESAYRLNPSG 60
           MASP   LP++L L  +L C SV G+ E+ GQ V ++F+CFDN  IY GCESAYRLNP+G
Sbjct: 1   MASP---LPILLLL--ALYCSSVCGE-ELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTG 60

Query: 61  SFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQR 120
           + NVP EATNLFCNGPCLIETQLLLNCLD++FHNFLFYNKAT   ++NALR GCS+S+QR
Sbjct: 61  NLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDIQNALRAGCSYSTQR 115

[Close]

BLAST of MELO3C029286.jh1 vs. TAIR 10
Match: AT1G56320.1 (BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT5G49350.2); Has 60 Blast hits to 60 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-24
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 31  GQMVVESFKCFDNKFIYNGCESAYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDN 90
           G +V  +  CF+N  +Y GC  A+RLN  G F VPPE T+ FCNGPC  ET+L+L C+++
Sbjct: 37  GILVQRAAFCFNNNLLYRGCNEAFRLNQQGEFKVPPEETDRFCNGPCSAETELVLTCINS 96

Query: 91  SFHNFLFYNKATAQSVRNALRIGCSFSSQRG 122
              +F+FYN+AT + VRNALR GCS S  RG
Sbjct: 97  VMSDFVFYNRATPRDVRNALRGGCSSSFTRG 127

[Close]

BLAST of MELO3C029286.jh1 vs. TAIR 10
Match: AT5G49350.1 (Glycine-rich protein family )

HSP 1 Score: 94.7 bits (234), Expect = 6.0e-20
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 28  EIPGQMVVESFKCFDNKFIYNGCESAYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNC 87
           E P ++V ++ +C + K IY  C+ ++RL  +G  N+P   T  FC GPC  ET L LNC
Sbjct: 175 EDPPEIVAKALECLNEKHIYRECDESWRLTLNGDLNIPLGRTEEFCEGPCFSETHLALNC 234

Query: 88  LDNSFHNFLFYNKATAQSVRNALRIGCSFSSQRG 122
           ++   H++ F+N+AT   +R  L+ GCS+  +RG
Sbjct: 235 IEEIIHHYRFFNRATIHDIRETLKSGCSYGPERG 268

[Close]

BLAST of MELO3C029286.jh1 vs. TAIR 10
Match: AT5G49350.2 (Glycine-rich protein family )

HSP 1 Score: 94.7 bits (234), Expect = 6.0e-20
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 28  EIPGQMVVESFKCFDNKFIYNGCESAYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNC 87
           E P ++V ++ +C + K IY  C+ ++RL  +G  N+P   T  FC GPC  ET L LNC
Sbjct: 98  EDPPEIVAKALECLNEKHIYRECDESWRLTLNGDLNIPLGRTEEFCEGPCFSETHLALNC 157

Query: 88  LDNSFHNFLFYNKATAQSVRNALRIGCSFSSQRG 122
           ++   H++ F+N+AT   +R  L+ GCS+  +RG
Sbjct: 158 IEEIIHHYRFFNRATIHDIRETLKSGCSYGPERG 191

The following BLAST results are available for this feature:

BLAST of MELO3C029286.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050947.1	1.39e-93	97.81	uncharacterized protein E6C27_scaffold761G00740 [Cucumis melo var. makuwa] >TYK1...	[more]
XP_008450550.1	4.10e-82	98.35	PREDICTED: uncharacterized protein LOC103492117 [Cucumis melo]	[more]
XP_031736077.1	1.05e-73	88.52	uncharacterized protein LOC101204762 [Cucumis sativus]	[more]
XP_022158829.1	2.54e-59	75.21	uncharacterized protein LOC111025289 [Momordica charantia]	[more]
KAE8653344.1	1.18e-56	93.26	hypothetical protein Csa_007318 [Cucumis sativus]	[more]

BLAST of MELO3C029286.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C029286.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U972	6.73e-94	97.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BPH6	1.98e-82	98.35	uncharacterized protein LOC103492117 OS=Cucumis melo OX=3656 GN=LOC103492117 PE=...	[more]
A0A0A0LYD5	3.55e-71	82.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561940 PE=4 SV=1	[more]
A0A6J1E0J9	1.23e-59	75.21	uncharacterized protein LOC111025289 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1EZD6	1.29e-51	68.60	uncharacterized protein LOC111437811 OS=Cucurbita moschata OX=3662 GN=LOC1114378...	[more]

BLAST of MELO3C029286.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56320.1	1.4e-24	52.75	BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT...	[more]
AT5G49350.1	6.0e-20	39.36	Glycine-rich protein family	[more]
AT5G49350.2	6.0e-20	39.36	Glycine-rich protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34366	OS07G0289901 PROTEIN-RELATED	coord: 10..122
None	No IPR available	PANTHER	PTHR34366:SF8	BNAANNG20590D PROTEIN	coord: 10..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029286.jh1.t1	MELO3C029286.jh1.t1	mRNA