MELO3C029167 (gene) Melon (DHL92) v4

Overview
NameMELO3C029167
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPH_TFIIH domain-containing protein
Locationchr01: 25838054 .. 25840416 (+)
RNA-Seq ExpressionMELO3C029167
SyntenyMELO3C029167
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTATCATATGGCACCAAGAGTTGCTTTGTAAAACATCAATTTTGAGTCCTAATTTCTCATTTTCCTCTCTGCCTCCAAACTCACTACAACTTCTCTTTGTCGCACTGAACCCCCATCGGCCACCCAATCTTCATCCGCCTACCTCTCATTGTCCTCCAATCGATATCGTTTCATTAGCCATTACTCCTCCATCACGAGTATAGAAACAGCTGCCAATTTCGACTCCTCTTTCGTGAAAATGATGCCACACCAACTTCTATTTCCTACCCATTTTGAAGGTTCAAGCTATTTCTATTTCGATTGGTAAAGAATCTTTGCCCTAAACTCAATCTTCACTTTACAATGATTTCCTATACAATGAACTTGATTTTTTTTCCATTTTAGTTTTCTAAAAGAAATATATGAGTTTGCTTGAATTATAGCATGCTTTGTTAATTTTTTGTAGGACTAAAGCAACTTATGCTCCAAGCTATTTCTATTTCAATTGGTAAACAATCTTTGCCTAAGCCAACTATAATGAACTTCGTTTTTTTTTTCATTTTAACTTAATTTTATAAAACTAGAAATATATATATATATATATATATATATATATATATATATATATATAGAAATAATATAATAGTTGAACGATTTTGAGATAAATCTGCTTGTAGGATTTTGCTAAAAGTGTTGTCTTGTATTTGTATGCTACGATGGATACATTAATTATTTGGATTAATATGCTTTGATGGACAAAAGGTTACCTGGATTATGTCACTACAAGAAATTTATTATTTAGTGACAAAGTTTTAGTGACGTAAGTAGTTTTTGCCGGTTTTTAATATGTGTCACTAAAAGAATTAGTAACACAGCAATAATGTCACTAAACATTAAATAGTTTTAGCAAGAAACATCTATATTGTTTCTATTTGGGTTTTCCACTTTATTTTTCTTTTGGTATAAGAGTTTGAATGTGCTTAGCACTCTATCCATCAAGATTAAGGACGTTGGTTCTGCATTTGTATTGGTTTGGAACCCATTCAAACACAAACTAACATGTAGTTAAGCTTTTTGGGCATTAGTCAGTGGGTAAGGATTTTTTCATGAATTTCAAACTCATTTAAGTTAGATTACTTAGTCTCTATCTTGGAAGTTCTTGTCAAACCTCTGCATTGTTATTTGTAGATTTGTAATTGTTTTTTAAGAAAATCTTATGCTCTAAAGTTGGTTGTGTCTTTCAAAATAAACTCTAGGAATATTAAATAATGGATAAAAACCTCAACATGAAAAGTTGAAGCATTGATCTTGATCGTAGCACAAACAATAATTTTATTTGGGTTCATTATGGTTGAATTAAATTGAATTTTGAAAATCAACTTATTCTAGTCAAGGACATTGTTATTAATTGGATTTAATGTTGTTAAATTACTTTAAACAATAATGGTGGGATTTTGAGTTTTGTGTCTGATTTCATTATTAGCTTATGGGATTTCTCTTGTTATTATTTCTCATTAGCTTTTGGTGTGATTCTTTAGTGGCTTCTCTTTAGATTTAATGTTTAAATTGTGCTGGCTTCTCACTTATTATTCAGAAGCTTCAGAGACTTACTTTGCAGAGGCAAGTTGCAATGGTGCAAAAAATAAATAAGAGAGTACCTTCAACTTAAGGCACTTTTAAGGTTTTGCATTTGCGCTTTAGCCTAAATTCTCTAGAACAAGTTATTGTTTTTGTTTAAAACAAAGTCTTTTTTTTTTTCTCTACAAAAGCATCTAATAACTATGACATCCCATGTGTTCTCTCTTATTCTTTAGATAGCTATGTGAGCAAATATCCACTAATTCTTAAAATATGTTTGTAAGGTTTAAATATTTCATAGAGATCCTACATTTTGTTTCTATTTCTAGGACATAATCCTAGTATCAAAGTTCCTAGACTTAAAAGTTAAAGTTCTTTTAGTTTTAATGCTATTCTCATTTTGTTTGTAGATTTCAAGGAGTTGAGGATAACAATTGGTGAGACTTTGAGTTTGGAGTTATCTAAGAGTGTAATGGTGCTTGGAGGAAGGTAATGTTTCTGTTTATTATTACATATACTTTGTGCTTAATGATTAAAAACAATGATCACAACTCGTTTTGTAATATGAATAAGAATGATGTTTTTATGTTGTAAGTATGTAATGACCAACTATATGTATATTCAAGGATATATGCAATTTGTTAGTTCATTGAATGAAAATTTGGGTTAATTTAGGAAACACAAATAGTTGAATTGATCATGGAAAACTTAATTTTTTGTTTAGGTTTATATAGTAAATTGAATATTGCTTTTTTTATTTAGTAAAATACTTTTACTGGCGTTTTCAATAACGTTGCAATAA

mRNA sequence

ATGCCTATCATATGGCACCAAGAGTTGCTTTGTAAAACATCAATTTTGAGTCCTAATTTCTCATTTTCCTCTCTGCCTCCAAACTCACTACAACTTCTCTTTGTCGCACTGAACCCCCATCGGCCACCCAATCTTCATCCGCCTACCTCTCATTGTCCTCCAATCGATATCGTTTCATTAGCCATTACTCCTCCATCACGAAGTTTGAATGTGCTTAGCACTCTATCCATCAAGATTAAGGACGTTGGTTCTGCATTTGTATTGGTTTGGAACCCATTCAAACACAAACTAACATGTAATTTCAAGGAGTTGAGGATAACAATTGGTGAGACTTTGAGTTTGGAGTTATCTAAGAGTGTAATGGTGCTTGGAGGAAGTAAAATACTTTTACTGGCGTTTTCAATAACGTTGCAATAA

Coding sequence (CDS)

ATGCCTATCATATGGCACCAAGAGTTGCTTTGTAAAACATCAATTTTGAGTCCTAATTTCTCATTTTCCTCTCTGCCTCCAAACTCACTACAACTTCTCTTTGTCGCACTGAACCCCCATCGGCCACCCAATCTTCATCCGCCTACCTCTCATTGTCCTCCAATCGATATCGTTTCATTAGCCATTACTCCTCCATCACGAAGTTTGAATGTGCTTAGCACTCTATCCATCAAGATTAAGGACGTTGGTTCTGCATTTGTATTGGTTTGGAACCCATTCAAACACAAACTAACATGTAATTTCAAGGAGTTGAGGATAACAATTGGTGAGACTTTGAGTTTGGAGTTATCTAAGAGTGTAATGGTGCTTGGAGGAAGTAAAATACTTTTACTGGCGTTTTCAATAACGTTGCAATAA

Protein sequence

MPIIWHQELLCKTSILSPNFSFSSLPPNSLQLLFVALNPHRPPNLHPPTSHCPPIDIVSLAITPPSRSLNVLSTLSIKIKDVGSAFVLVWNPFKHKLTCNFKELRITIGETLSLELSKSVMVLGGSKILLLAFSITLQ
Homology
[Close]
BLAST of MELO3C029167 vs. NCBI nr
Match: KGN54745.2 (hypothetical protein Csa_012761 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 0 

Query: 67  RSLNVLSTLSIKIKDVGSAFVLVWNPFKHKLTCNFKELRITIG 110
           +S NVLSTLS KIKDVG AFV VWNPFKH+ T N+  L +  G
Sbjct: 66  KSSNVLSTLSSKIKDVGRAFVSVWNPFKHEPTVNYAFLALISG 108

[Close]
BLAST of MELO3C029167 vs. ExPASy TrEMBL
Match: A0A0A0KYD2 (PH_TFIIH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G338430 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.2e-05
Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 58  VSLAITPPSRSLNVLSTLSIKIKDVGSAFVLVWNPFKHKLTCNFKELRITIG 110
           V  A+     S NVLSTLS KIKDVG AFV VWNPFKH+ T N+  L +  G
Sbjct: 16  VVTAVPTSENSSNVLSTLSSKIKDVGRAFVSVWNPFKHEPTVNYAFLALISG 67

The following BLAST results are available for this feature:
BLAST of MELO3C029167 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54745.21.1e-0465.12hypothetical protein Csa_012761 [Cucumis sativus][more]
BLAST of MELO3C029167 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029167 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYD23.2e-0557.69PH_TFIIH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G338430 PE... [more]
BLAST of MELO3C029167 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029167.1MELO3C029167.1mRNA