Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACATTTACTTAACAATTTTGCAATCAGTACTCATACGTGATATTTTTTTTCCCCGCAGTCGCATCCTGTAGCGAAGGGACTCCTGAACAAACCATTCGCGTATTACAACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACCAGTCGGTTCGCTGAGACATTCGCGGACGTCGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAATGAAGAGTTCCCGCTCGTGTACAGCCAGAGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGAACGAATTGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGATTTCGATGTTGAAGCGATACATCTGACGCTCGACCAAACAAACGAGCAACTCAGGTAGATTGCGGAGTGGCCTGCACGCAACCTTGCAAATGACAACCATGTGCGCACGGAATTCTTCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCAGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATTATAAGATAG
mRNA sequence
ATGTACATTTACTTAACAATTTTGCAATCATCGCATCCTGTAGCGAAGGGACTCCTGAACAAACCATTCGCGTATTACAACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACCAGTCGGTTCGCTGAGACATTCGCGGACGTCGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAATGAAGAGTTCCCGCTCGTGTACAGCCAGAGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGAACGAATTGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGATTTCGATGTTGAAGCGATACATCTGACGCTCGACCAAACAAACGAGCAACTCAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCAGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATTATAAGATAG
Coding sequence (CDS)
ATGTACATTTACTTAACAATTTTGCAATCATCGCATCCTGTAGCGAAGGGACTCCTGAACAAACCATTCGCGTATTACAACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACCAGTCGGTTCGCTGAGACATTCGCGGACGTCGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAATGAAGAGTTCCCGCTCGTGTACAGCCAGAGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGAACGAATTGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGATTTCGATGTTGAAGCGATACATCTGACGCTCGACCAAACAAACGAGCAACTCAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCAGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATTATAAGATAG
Protein sequence
MYIYLTILQSSHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNEEFPLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQLRALLQRHLLSRMDDLQGFVLMPEDEREGFCRVLLRDIIR
Homology
BLAST of MELO3C029115 vs. NCBI nr
Match:
KAA0066208.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 268.1 bits (684), Expect = 5.2e-68
Identity = 143/193 (74.09%), Postives = 147/193 (76.17%), Query Frame = 0
Query: 11 SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNEEF 70
SHP AKGLLNKPF YY+ELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNE+F
Sbjct: 114 SHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF 173
Query: 71 PLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQL- 130
P VYSQ +D+SQDDVRASRPSRASEGR SGSKRKRGSQRDFDVEAIHL LDQTNEQL
Sbjct: 174 PPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLR 233
Query: 131 ----------------------------------RALLQRHLLSRMDDLQGFVLMPEDER 169
RALLQRHLLSRMDDL GFVLMPEDER
Sbjct: 234 QIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLWGFVLMPEDER 293
BLAST of MELO3C029115 vs. NCBI nr
Match:
KAA0041588.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 266.5 bits (680), Expect = 1.5e-67
Identity = 141/193 (73.06%), Postives = 148/193 (76.68%), Query Frame = 0
Query: 11 SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNEEF 70
SHP AKGLLNKPF YY+ELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNE+F
Sbjct: 114 SHPAAKGLLNKPFPYYDELTYVFGRDRATDRFAETFADVGSNEPGGGYDRFDMGDGNEDF 173
Query: 71 PLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQL- 130
P VYSQ +D+SQDDVRASRPSRASEGR SGSKRKRGSQRDF++EAIHL LDQTNEQL
Sbjct: 174 PPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLR 233
Query: 131 ----------------------------------RALLQRHLLSRMDDLQGFVLMPEDER 169
RALLQRHLLSRMDDL+GFVLMPEDER
Sbjct: 234 QIAEWPARNLANDNHVRTEFFRILREMPEHTSLDRALLQRHLLSRMDDLRGFVLMPEDER 293
BLAST of MELO3C029115 vs. NCBI nr
Match:
TYK10915.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15088.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 266.5 bits (680), Expect = 1.5e-67
Identity = 141/193 (73.06%), Postives = 148/193 (76.68%), Query Frame = 0
Query: 11 SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNEEF 70
SHP AKGLLNKPF YY+ELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNE+F
Sbjct: 64 SHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF 123
Query: 71 PLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQL- 130
P VYSQ +D+SQDDVRASRPSRASEGR SGSKRKRGSQRDF++EAIHL LDQTNEQL
Sbjct: 124 PPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLR 183
Query: 131 ----------------------------------RALLQRHLLSRMDDLQGFVLMPEDER 169
RALLQRHLLSRMDDL+GFVLMPEDER
Sbjct: 184 QIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDER 243
BLAST of MELO3C029115 vs. NCBI nr
Match:
KAA0032766.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 266.5 bits (680), Expect = 1.5e-67
Identity = 141/193 (73.06%), Postives = 148/193 (76.68%), Query Frame = 0
Query: 11 SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNEEF 70
SHP AKGLLNKPF YY+ELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNE+F
Sbjct: 114 SHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF 173
Query: 71 PLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQL- 130
P VYSQ +D+SQDDVRASRPSRASEGR SGSKRKRGSQRDF++EAIHL LDQTNEQL
Sbjct: 174 PPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLR 233
Query: 131 ----------------------------------RALLQRHLLSRMDDLQGFVLMPEDER 169
RALLQRHLLSRMDDL+GFVLMPEDER
Sbjct: 234 QIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDER 293
BLAST of MELO3C029115 vs. NCBI nr
Match:
KAA0033744.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046274.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049705.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0057135.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 266.5 bits (680), Expect = 1.5e-67
Identity = 141/193 (73.06%), Postives = 148/193 (76.68%), Query Frame = 0
Query: 11 SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNEEF 70
SHP AKGLLNKPF YY+ELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNE+F
Sbjct: 114 SHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF 173
Query: 71 PLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQL- 130
P VYSQ +D+SQDDVRASRPSRASEGR SGSKRKRGSQRDF++EAIHL LDQTNEQL
Sbjct: 174 PPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLR 233
Query: 131 ----------------------------------RALLQRHLLSRMDDLQGFVLMPEDER 169
RALLQRHLLSRMDDL+GFVLMPEDER
Sbjct: 234 EIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDER 293
BLAST of MELO3C029115 vs. ExPASy TrEMBL
Match:
A0A5A7VES2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002250 PE=4 SV=1)
HSP 1 Score: 268.1 bits (684), Expect = 2.5e-68
Identity = 143/193 (74.09%), Postives = 147/193 (76.17%), Query Frame = 0
Query: 11 SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNEEF 70
SHP AKGLLNKPF YY+ELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNE+F
Sbjct: 114 SHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF 173
Query: 71 PLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQL- 130
P VYSQ +D+SQDDVRASRPSRASEGR SGSKRKRGSQRDFDVEAIHL LDQTNEQL
Sbjct: 174 PPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLR 233
Query: 131 ----------------------------------RALLQRHLLSRMDDLQGFVLMPEDER 169
RALLQRHLLSRMDDL GFVLMPEDER
Sbjct: 234 QIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLWGFVLMPEDER 293
BLAST of MELO3C029115 vs. ExPASy TrEMBL
Match:
A0A5A7SWU2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00190 PE=4 SV=1)
HSP 1 Score: 266.5 bits (680), Expect = 7.3e-68
Identity = 142/193 (73.58%), Postives = 147/193 (76.17%), Query Frame = 0
Query: 11 SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNEEF 70
SHPVAKGLLNKPF YY+ELTYVFGRDRAT RFAETFAD+GSNEPGGGYDRFDMGDG E+F
Sbjct: 219 SHPVAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADMGSNEPGGGYDRFDMGDGKEDF 278
Query: 71 PLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQL- 130
P +YSQRIDLSQDDVRASRPSRASEGR SGSKRKRGSQRDFDVEAIHL LDQTNEQL
Sbjct: 279 PPMYSQRIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLVLDQTNEQLR 338
Query: 131 ----------------------------------RALLQRHLLSRMDDLQGFVLMPEDER 169
R LLQRHLLS MDDL+GFVLMPEDER
Sbjct: 339 QIAEWPARNLANDNHVRTEFFRILREMPELTSLDRVLLQRHLLSHMDDLRGFVLMPEDER 398
BLAST of MELO3C029115 vs. ExPASy TrEMBL
Match:
A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)
HSP 1 Score: 266.5 bits (680), Expect = 7.3e-68
Identity = 141/193 (73.06%), Postives = 148/193 (76.68%), Query Frame = 0
Query: 11 SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNEEF 70
SHP AKGLLNKPF YY+ELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNE+F
Sbjct: 114 SHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF 173
Query: 71 PLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQL- 130
P VYSQ +D+SQDDVRASRPSRASEGR SGSKRKRGSQRDF++EAIHL LDQTNEQL
Sbjct: 174 PPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLR 233
Query: 131 ----------------------------------RALLQRHLLSRMDDLQGFVLMPEDER 169
RALLQRHLLSRMDDL+GFVLMPEDER
Sbjct: 234 EIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDER 293
BLAST of MELO3C029115 vs. ExPASy TrEMBL
Match:
A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)
HSP 1 Score: 266.5 bits (680), Expect = 7.3e-68
Identity = 141/193 (73.06%), Postives = 148/193 (76.68%), Query Frame = 0
Query: 11 SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNEEF 70
SHP AKGLLNKPF YY+ELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNE+F
Sbjct: 114 SHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF 173
Query: 71 PLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQL- 130
P VYSQ +D+SQDDVRASRPSRASEGR SGSKRKRGSQRDF++EAIHL LDQTNEQL
Sbjct: 174 PPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLR 233
Query: 131 ----------------------------------RALLQRHLLSRMDDLQGFVLMPEDER 169
RALLQRHLLSRMDDL+GFVLMPEDER
Sbjct: 234 QIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDER 293
BLAST of MELO3C029115 vs. ExPASy TrEMBL
Match:
A0A5D3CHA0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00970 PE=4 SV=1)
HSP 1 Score: 266.5 bits (680), Expect = 7.3e-68
Identity = 141/193 (73.06%), Postives = 148/193 (76.68%), Query Frame = 0
Query: 11 SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNEEF 70
SHP AKGLLNKPF YY+ELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNE+F
Sbjct: 64 SHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF 123
Query: 71 PLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQL- 130
P VYSQ +D+SQDDVRASRPSRASEGR SGSKRKRGSQRDF++EAIHL LDQTNEQL
Sbjct: 124 PPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLR 183
Query: 131 ----------------------------------RALLQRHLLSRMDDLQGFVLMPEDER 169
RALLQRHLLSRMDDL+GFVLMPEDER
Sbjct: 184 QIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDER 243
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0066208.1 | 5.2e-68 | 74.09 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0041588.1 | 1.5e-67 | 73.06 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK10915.1 | 1.5e-67 | 73.06 | retrotransposon protein [Cucumis melo var. makuwa] >TYK15088.1 retrotransposon p... | [more] |
KAA0032766.1 | 1.5e-67 | 73.06 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0033744.1 | 1.5e-67 | 73.06 | retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VES2 | 2.5e-68 | 74.09 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7SWU2 | 7.3e-68 | 73.58 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TRV1 | 7.3e-68 | 73.06 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3DCZ1 | 7.3e-68 | 73.06 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3CHA0 | 7.3e-68 | 73.06 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |