MELO3C029076.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C029076.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr01: 19311343 .. 19313349 (-)
RNA-Seq ExpressionMELO3C029076.jh1
SyntenyMELO3C029076.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCTTTACCCCTTTCGAAATTACAAGTTCCACCAGATCCCTCACTTTTACTGTGTTCATTGTTCATCTGTCCCCATTCACCATTGTGTTTCACCTCTCCAAAAACGCGTACCAGATTCTTCACATTCCTATTGTCCCTCCAACTCTCTCCCTGCCACCACTCCCTCCGATTATATGTCTGCCGCCGTCTTCGACTCTCTCCCCATCGCTCTGTCTCCATCTCCCTCGTCTTCCTCTCACGGAATTGAAGGAAGCAGCCGATATGGATCCCCTCGACCTAGAGGGGAAGGTTTCAATATCTCGGAGAGGAAGCATAACGGCCATGGATAGGATAATCCGTCGTCCTTTCATGATCAGTTTATTCTACATTTTTTTACGTTCTTGTTCTTCTCCTTGGGGCTTTCATTTCTCCAGGTTTCAATCGATTAGTTTGTAATTTTTCTTTAATTTCTTTGTTCTTAATATGATTTCCGCCTAAATTTTTCTAAGGTTTTTACTCGTAGCTTGTGGTGTGTCACATTCCACATGTGTTCAAGGAATTCAACTTTCTCTTCTTAGTTATCTACTGGTGTAAGTGTTTTCTGTTTTCATTTTTTTATTATTGAATCTTTCAGTTTCTACACTTTGGGTAATTGGAAATTTTCTTTATTTTATTTCTTTCTTTATTGAAATTTTCTTTGATCTAGTTTCTACTACTAGTGTAAGTCCCAATCAGTAGTTTCGAAAGCACTTTCAATATCTAATTAAATCACTTCACCTAGTTTCTTAGATTTAGTTGGAGTTGTGGGGGATCTAGAAAAAATTGCCTCTGGAAATTCTAAACATGTAATTCAATTATAACTTTATCTTTTCATTCCTTTTGTAGTGGTAATTTATATTTTATGTCTAACCTTGTTTATGTTGGGAACTCAATCTATTATATGGTATTCTGCTCTGTTCTTATTTTGTTAATTTGTATGGTAATGTACAAAGTCTTTTCCCCTCAATTTTTGCTATACTTCAAAGCCAATCACTTTGTCCTTCTTGACCTTGAAATTTGTACATCTCTATCAATTCAATTGGATTATACTATATATATCTGAAATTTTCTTATTACTTCTTCGGGTGTTGTATTATCTTTTTATAGTTGAACCATTCACAACTTTCTCAATTCAGTTGCAATGTGGTAAATTTGATCATGCTGATTGGATGTTTTTGAATATTTCTGGTACTTTGAATCGGGTTTTAGAAGATATATGAGTGATTTGAAGAAATTAGTGAGTTCGTTGATTTTGAGCGTTTTATTTTATTTATATTATGTTGTTATTAATTTGTTTTAAGAACTCACCTACTTTCATCATTTACAAGGACGACTTGATTAAGTAATGATGTTGTTATCTAATAAAATGATACCCTTTATTTCTTGTAGGTTTTAGAGCTTTTTTACCTTTTTGAGATCTTAACGAATGAAAACTCAATTGATTTTGGCACCACCCAATTAGGGCAAAACCTTGGTAATCCTTAAGGAATATACTTACTATTGATTATTCGTATGCCAGTAAGTTTCTCATTTAGATGTTATTTAACATTCCAGATTTCGTCAAACTCCCTCAGTAAGCTAAAAATCCAATTAACTTTATTCATAAACATCATATGGCTATTGAGAGCGAGCGTATGTATCAACACATCTGCATAAGTGGATTGATCTCATATTTGGGTAGGCCGTTTACTTCATTGAGGGTTTTCCTTAATCTTGCTTACTGGATTTTCAGTGTTTATAAGTTGGTATTATTGGATTTTCAGTGTTTGTAAGTTGGTATAATTTCTTAATCTTTTTTTTTTATCTTTCTTCTCCCTTCAATTTCTTAATCTTAATCAAAGAGGCAATCACTACTACAAAACTGTGTTTACTTGACACTTTTTAACTGTCAAGTATTGGTTTACTTGACGCTTTTCAATGTGTCAACTAATCCAGTGTCAAGAATAAGAAAGGTTTACTTGACAGTTTCTAAGTGTCAAGTATAA

mRNA sequence

ATGTGTCTTTACCCCTTTCGAAATTACAAGTTCCACCAGATCCCTCACTTTTACTGTGTTCATTGTTCATCTGTCCCCATTCACCATTGTGTTTCACCTCTCCAAAAACGCGTACCAGATTCTTCACATTCCTATTGTCCCTCCAACTCTCTCCCTGCCACCACTCCCTCCGATTATATGTCTGCCGCCGTCTTCGACTCTCTCCCCATCGCTCTGTCTCCATCTCCCTCGTCTTCCTCTCACGGAATTGAAGGAAGCAGCCGATATGGATCCCCTCGACCTAGAGGGGAAGCTTGTGGTGTGTCACATTCCACATGTGTTCAAGGAATTCAACTTTCTCTTCTTAGTTATCTACTGGTTTTTTATAGTTGAACCATTCACAACTTTCTCAATTCAGTTGCAATGTGGTAAATTTGATCATGCTGATTGGATGTTTTTGAATATTTCTGGTACTTTGAATCGGGTTTTAGAGCTTTTTTACCTTTTTGAGATCTTAACGAATGAAAACTCAATTGATTTTGGCACCACCCAATTAGGGCAAAACCTTGATTTCGTCAAACTCCCTCAGTAAGCTAAAAATCCAATTAACTTTATTCATAAACATCATATGGCTATTGAGAGCGAGCGTATGTATCAACACATCTGCATAAGTGGATTGATCTCATATTTGGGTAGGCCGTTTACTTCATTGAGGGTTTTCCTTAATCTTGCTTACTGGATTTTCAGTGTTTATAAGTTGAGGCAATCACTACTACAAAACTGTGTTTACTTGACACTTTTTAACTGTCAAGTATTGGTTTACTTGACGCTTTTCAATGTGTCAACTAATCCAGTGTCAAGAATAAGAAAGGTTTACTTGACAGTTTCTAAGTGTCAAGTATAA

Coding sequence (CDS)

ATGTGTCTTTACCCCTTTCGAAATTACAAGTTCCACCAGATCCCTCACTTTTACTGTGTTCATTGTTCATCTGTCCCCATTCACCATTGTGTTTCACCTCTCCAAAAACGCGTACCAGATTCTTCACATTCCTATTGTCCCTCCAACTCTCTCCCTGCCACCACTCCCTCCGATTATATGTCTGCCGCCGTCTTCGACTCTCTCCCCATCGCTCTGTCTCCATCTCCCTCGTCTTCCTCTCACGGAATTGAAGGAAGCAGCCGATATGGATCCCCTCGACCTAGAGGGGAAGCTTGTGGTGTGTCACATTCCACATGTGTTCAAGGAATTCAACTTTCTCTTCTTAGTTATCTACTGGTTTTTTATAGTTGA

Protein sequence

MCLYPFRNYKFHQIPHFYCVHCSSVPIHHCVSPLQKRVPDSSHSYCPSNSLPATTPSDYMSAAVFDSLPIALSPSPSSSSHGIEGSSRYGSPRPRGEACGVSHSTCVQGIQLSLLSYLLVFYS
Homology
[Close]
BLAST of MELO3C029076.jh1 vs. NCBI nr
Match: KAA0047028.1 (uncharacterized protein E6C27_scaffold829G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 6.55e-16
Identity = 61/129 (47.29%), Postives = 71/129 (55.04%), Query Frame = 0 

Query: 1   MCLYPFRNYKFHQIPHFYCVHCSSVPIHHCVSPLQKRVPDSSHSYCPSNSLPATTPSDYM 60
           MCL PFRNYK HQIPH   VH  SV +H  V P QK VPD SH   PS+SLPA+      
Sbjct: 1   MCLCPFRNYKLHQIPHLCRVHHPSVRVHPRVPPCQKCVPDPSHFVRPSDSLPAS------ 60

Query: 61  SAAVFDSLPIALSPSPSSSSHG------IEGSSRYGSPRPRGEACGVSHS-------TCV 116
              +FDSLP +LSPS S SS        +     + SP     AC VSHS       + V
Sbjct: 61  ---IFDSLPTSLSPSLSPSSQSTFCYILVLLLRAFISP-----ACDVSHSNLKSSSSSSV 115

[Close]
BLAST of MELO3C029076.jh1 vs. NCBI nr
Match: TYK13521.1 (uncharacterized protein E5676_scaffold1015G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 2.97e-14
Identity = 60/129 (46.51%), Postives = 70/129 (54.26%), Query Frame = 0 

Query: 1   MCLYPFRNYKFHQIPHFYCVHCSSVPIHHCVSPLQKRVPDSSHSYCPSNSLPATTPSDYM 60
           MCL PFRNYK HQIPH   VH  SV +H  V P QK VPD SH    S+SLPA+      
Sbjct: 1   MCLCPFRNYKLHQIPHLCRVHHPSVRVHPRVPPRQKCVPDPSHFVRLSDSLPAS------ 60

Query: 61  SAAVFDSLPIALSPSPSSSSHG------IEGSSRYGSPRPRGEACGVSHS-------TCV 116
              +FDSLP +LSPS S SS        +     + SP     AC VSHS       + V
Sbjct: 61  ---IFDSLPTSLSPSLSPSSQSTFCYILVLLLRAFISP-----ACDVSHSNLKSSSSSSV 115

[Close]
BLAST of MELO3C029076.jh1 vs. NCBI nr
Match: XP_016900105.1 (PREDICTED: uncharacterized protein LOC107990315 [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 6.36e-08
Identity = 43/91 (47.25%), Postives = 49/91 (53.85%), Query Frame = 0 

Query: 32  SPLQKRVPDSSHSYCPSNSLPATTPSDYMSAAVFDSLPIALSPSPSSSSHG--------I 91
           S LQKRVPD SH  C S+ LPAT  SD +SA VFDSLP+ LSPS S  S          +
Sbjct: 31  STLQKRVPDPSHFVCLSDFLPATALSDSLSATVFDSLPVTLSPSLSPFSQSTFCYVLVLV 90

Query: 92  EGSSRYGSPRPRGEACGVSHSTCVQGIQLSL 114
                + SP     ACGVSHS       LS+
Sbjct: 91  LLLRAFISPGFLAVACGVSHSNLKSSSSLSV 121

[Close]
BLAST of MELO3C029076.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TVW7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00110 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.17e-16
Identity = 61/129 (47.29%), Postives = 71/129 (55.04%), Query Frame = 0 

Query: 1   MCLYPFRNYKFHQIPHFYCVHCSSVPIHHCVSPLQKRVPDSSHSYCPSNSLPATTPSDYM 60
           MCL PFRNYK HQIPH   VH  SV +H  V P QK VPD SH   PS+SLPA+      
Sbjct: 1   MCLCPFRNYKLHQIPHLCRVHHPSVRVHPRVPPCQKCVPDPSHFVRPSDSLPAS------ 60

Query: 61  SAAVFDSLPIALSPSPSSSSHG------IEGSSRYGSPRPRGEACGVSHS-------TCV 116
              +FDSLP +LSPS S SS        +     + SP     AC VSHS       + V
Sbjct: 61  ---IFDSLPTSLSPSLSPSSQSTFCYILVLLLRAFISP-----ACDVSHSNLKSSSSSSV 115

[Close]
BLAST of MELO3C029076.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CNX2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1015G00020 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.44e-14
Identity = 60/129 (46.51%), Postives = 70/129 (54.26%), Query Frame = 0 

Query: 1   MCLYPFRNYKFHQIPHFYCVHCSSVPIHHCVSPLQKRVPDSSHSYCPSNSLPATTPSDYM 60
           MCL PFRNYK HQIPH   VH  SV +H  V P QK VPD SH    S+SLPA+      
Sbjct: 1   MCLCPFRNYKLHQIPHLCRVHHPSVRVHPRVPPRQKCVPDPSHFVRLSDSLPAS------ 60

Query: 61  SAAVFDSLPIALSPSPSSSSHG------IEGSSRYGSPRPRGEACGVSHS-------TCV 116
              +FDSLP +LSPS S SS        +     + SP     AC VSHS       + V
Sbjct: 61  ---IFDSLPTSLSPSLSPSSQSTFCYILVLLLRAFISP-----ACDVSHSNLKSSSSSSV 115

[Close]
BLAST of MELO3C029076.jh1 vs. ExPASy TrEMBL
Match: A0A1S4DWL6 (uncharacterized protein LOC107990315 OS=Cucumis melo OX=3656 GN=LOC107990315 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.08e-08
Identity = 43/91 (47.25%), Postives = 49/91 (53.85%), Query Frame = 0 

Query: 32  SPLQKRVPDSSHSYCPSNSLPATTPSDYMSAAVFDSLPIALSPSPSSSSHG--------I 91
           S LQKRVPD SH  C S+ LPAT  SD +SA VFDSLP+ LSPS S  S          +
Sbjct: 31  STLQKRVPDPSHFVCLSDFLPATALSDSLSATVFDSLPVTLSPSLSPFSQSTFCYVLVLV 90

Query: 92  EGSSRYGSPRPRGEACGVSHSTCVQGIQLSL 114
                + SP     ACGVSHS       LS+
Sbjct: 91  LLLRAFISPGFLAVACGVSHSNLKSSSSLSV 121

The following BLAST results are available for this feature:
BLAST of MELO3C029076.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047028.16.55e-1647.29uncharacterized protein E6C27_scaffold829G00110 [Cucumis melo var. makuwa][more]
TYK13521.12.97e-1446.51uncharacterized protein E5676_scaffold1015G00020 [Cucumis melo var. makuwa][more]
XP_016900105.16.36e-0847.25PREDICTED: uncharacterized protein LOC107990315 [Cucumis melo][more]
BLAST of MELO3C029076.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029076.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TVW73.17e-1647.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CNX21.44e-1446.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S4DWL63.08e-0847.25uncharacterized protein LOC107990315 OS=Cucumis melo OX=3656 GN=LOC107990315 PE=... [more]
BLAST of MELO3C029076.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029076.jh1.t1MELO3C029076.jh1.t1mRNA