Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTTATATCCACGTAATAATTTTATGGAGACGGACGCTATGTTCCTCGAGTTTGAGGACGATTTAGATAACATCGCGGAAGGGTCATCGTCTGTGGGCAACAATACGAGTGAATTAAGAATTTTCTTCATTTTAACTTACGATTATTTCATGTTCTTTTTTCTAACATTATATGTTATTATCGATTTATTGAGTAGGGTATTCTTCTCAACAACCTATGACTCCGACTCATAGGAGACGTGCAAAGTCTCGACTCTTGGACTTAAAGCACCACGTTGCAATAAATGCACGCATTTCGATGACAATCGCCTCTGGAGCGGAGAAGCCTATTTCTCCACATGTCGTTCGCTTCAGCCAGGCAATAGGCGTGTGCATGCGAAAGAAATTTCCTGTCTGCTGCCTTAAGTAGACAGACGTTGGGAGAGAATACATTGAGGTAGTCAAGGGCGACCTCCAGGTAATGAAGTGCACTACACATTTATGATTTCATTTCAAACATATCTAAGTTTAACCAATCTAATGTGTTATGTTTGTAATGTGTAGCGATTGTTTGTACTTGATTTCAATGATCAAGCAATGAATAGGTTCGTTGGGCATCATATGCTCACGACCTTTAAAGAGTTCCGGGCCGACTGTCCCAGACATTTCAAAAAGTACAGGGACCAAGAGGAGGCTCGTGCCAACCCACCAAACACATTGGTTGGACGTCATGAGGATTGA
mRNA sequence
CGTTATATCCACGTAATAATTTTATGGAGACGGACGCTATGTTCCTCGAGTTTGAGGACGATTTAGATAACATCGCGGAAGGGTCATCGTCTGTGGGCAACAATACGAGGTATTCTTCTCAACAACCTATGACTCCGACTCATAGGAGACGTGCAAAGTCTCGACTCTTGGACTTAAAGCACCACGTTGCAATAAATGCACGCATTTCGATGACAATCGCCTCTGGAGCGGAGAAGCCTATTTCTCCACATGTCGTTCGCTTCAGCCAGGCAATAGGCACAGACGTTGGGAGAGAATACATTGAGGTAGTCAAGGGCGACCTCCAGCGATTGTTTGTACTTGATTTCAATGATCAAGCAATGAATAGGTTCGTTGGGCATCATATGCTCACGACCTTTAAAGAGTTCCGGGCCGACTGTCCCAGACATTTCAAAAAGTACAGGGACCAAGAGGAGGCTCGTGCCAACCCACCAAACACATTGGTTGGACGTCATGAGGATTGA
Coding sequence (CDS)
ATGGAGACGGACGCTATGTTCCTCGAGTTTGAGGACGATTTAGATAACATCGCGGAAGGGTCATCGTCTGTGGGCAACAATACGAGGTATTCTTCTCAACAACCTATGACTCCGACTCATAGGAGACGTGCAAAGTCTCGACTCTTGGACTTAAAGCACCACGTTGCAATAAATGCACGCATTTCGATGACAATCGCCTCTGGAGCGGAGAAGCCTATTTCTCCACATGTCGTTCGCTTCAGCCAGGCAATAGGCACAGACGTTGGGAGAGAATACATTGAGGTAGTCAAGGGCGACCTCCAGCGATTGTTTGTACTTGATTTCAATGATCAAGCAATGAATAGGTTCGTTGGGCATCATATGCTCACGACCTTTAAAGAGTTCCGGGCCGACTGTCCCAGACATTTCAAAAAGTACAGGGACCAAGAGGAGGCTCGTGCCAACCCACCAAACACATTGGTTGGACGTCATGAGGATTGA
Protein sequence
METDAMFLEFEDDLDNIAEGSSSVGNNTRYSSQQPMTPTHRRRAKSRLLDLKHHVAINARISMTIASGAEKPISPHVVRFSQAIGTDVGREYIEVVKGDLQRLFVLDFNDQAMNRFVGHHMLTTFKEFRADCPRHFKKYRDQEEARANPPNTLVGRHED
Homology
BLAST of MELO3C029062.jh1 vs. NCBI nr
Match:
KAA0056316.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 243 bits (619), Expect = 2.17e-79
Identity = 134/174 (77.01%), Postives = 139/174 (79.89%), Query Frame = 0
Query: 1 METDAMFLEFEDDLDN-IAEGSSSVGNNTRYSSQQPMTPTHRRRAKSRLLDLKHHVAINA 60
METD MFL+FEDDLDN IA GSSSVG+NT SS Q TPT RR A+SRLL+L+ HVAIN
Sbjct: 1 METDDMFLQFEDDLDNNIAGGSSSVGDNTAGSSSQQTTPTPRRCAQSRLLELERHVAING 60
Query: 61 RISMTIASGAEKPISPHVVRFSQAIG--------------TDVGREYIEVVKGDLQRLFV 120
RI MTIA GAEKPISPHVVRFSQAIG TDVGREYIEVVKGDLQRLFV
Sbjct: 61 RIPMTIAPGAEKPISPHVVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRLFV 120
Query: 121 LDFNDQAMNRFVGHHMLTTFKEFRADCPRHFKKYRDQEEARANPPNTLVGRHED 159
LDFNDQAMNRFV H MLTTFKEFRADC RHFKKY D EEARANPPN LVGR ED
Sbjct: 121 LDFNDQAMNRFVEHQMLTTFKEFRADCHRHFKKYSDPEEARANPPNALVGRDED 174
BLAST of MELO3C029062.jh1 vs. NCBI nr
Match:
KAA0049620.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 247 bits (630), Expect = 9.66e-79
Identity = 132/173 (76.30%), Postives = 139/173 (80.35%), Query Frame = 0
Query: 1 METDAMFLEFEDDLDNIAEGSSSVGNNTRYSSQQPMTPTHRRRAKSRLLDLKHHVAINAR 60
MET+ MFL+FE+DLDNIA GSSSVG+NT SS Q TPT R RA+SRLL+L+HHVAIN R
Sbjct: 1 METNDMFLQFEEDLDNIARGSSSVGDNTAGSSSQQTTPTPRSRAQSRLLELEHHVAINGR 60
Query: 61 ISMTIASGAEKPISPHVVRFSQAIG--------------TDVGREYIEVVKGDLQRLFVL 120
I MTIA GAEKPISPH VRFSQAIG TDVGREYIEVVKGDLQRLFVL
Sbjct: 61 IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLNWTDVGREYIEVVKGDLQRLFVL 120
Query: 121 DFNDQAMNRFVGHHMLTTFKEFRADCPRHFKKYRDQEEARANPPNTLVGRHED 159
DFNDQAMNRFV H MLTTFKEFRADC RHFKKY D EEARANPPN LVGR ED
Sbjct: 121 DFNDQAMNRFVEHQMLTTFKEFRADCHRHFKKYSDPEEARANPPNALVGRDED 173
BLAST of MELO3C029062.jh1 vs. NCBI nr
Match:
KAA0065518.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 246 bits (629), Expect = 1.69e-78
Identity = 132/160 (82.50%), Postives = 137/160 (85.62%), Query Frame = 0
Query: 1 METDAMFLEFEDDLDNIAEGSSSVGNNTRYSSQQPMTPTHRRRAKSRLLDLKHHVAINAR 60
METD MFL+FE+DLDNIA GSSSVG+NT SSQQ TPT RRRA+SRLL+LK HVAIN R
Sbjct: 176 METDDMFLQFEEDLDNIAGGSSSVGDNTGSSSQQT-TPTPRRRAQSRLLELKRHVAINGR 235
Query: 61 ISMTIASGAEKPISPHVVRFSQAIG-TDVGREYIEVVKGDLQRLFVLDFNDQAMNRFVGH 120
I MTIA GAEKPISPH VRFSQAIG DVGREYIEVVKGDLQRLFVLDFNDQAMNRFV H
Sbjct: 236 ILMTIAPGAEKPISPHAVRFSQAIGWADVGREYIEVVKGDLQRLFVLDFNDQAMNRFVEH 295
Query: 121 HMLTTFKEFRADCPRHFKKYRDQEEARANPPNTLVGRHED 159
M TTFKEFR DC RHFKKY D EEARANPPN LVGR ED
Sbjct: 296 QMFTTFKEFRTDCHRHFKKYSDSEEARANPPNALVGRDED 334
BLAST of MELO3C029062.jh1 vs. NCBI nr
Match:
TYJ99698.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 244 bits (624), Expect = 4.52e-78
Identity = 131/173 (75.72%), Postives = 138/173 (79.77%), Query Frame = 0
Query: 1 METDAMFLEFEDDLDNIAEGSSSVGNNTRYSSQQPMTPTHRRRAKSRLLDLKHHVAINAR 60
METD MFL+FE+DLDNIA GSSSVG+NT SS Q TPT RRRA+SRLL+L+ HVAIN R
Sbjct: 102 METDDMFLQFEEDLDNIAGGSSSVGDNTAGSSSQQTTPTPRRRAQSRLLELERHVAINGR 161
Query: 61 ISMTIASGAEKPISPHVVRFSQAIG--------------TDVGREYIEVVKGDLQRLFVL 120
I MTIA GAEKPISPH VRFSQAIG TDVGREYIEVVKGDLQR FVL
Sbjct: 162 IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVL 221
Query: 121 DFNDQAMNRFVGHHMLTTFKEFRADCPRHFKKYRDQEEARANPPNTLVGRHED 159
DFNDQAMNRFV H MLTTFKEFRADC +HFKKY D EEARANPPN LVGR ED
Sbjct: 222 DFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNALVGRDED 274
BLAST of MELO3C029062.jh1 vs. NCBI nr
Match:
KAA0043336.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 244 bits (624), Expect = 7.81e-78
Identity = 131/173 (75.72%), Postives = 138/173 (79.77%), Query Frame = 0
Query: 1 METDAMFLEFEDDLDNIAEGSSSVGNNTRYSSQQPMTPTHRRRAKSRLLDLKHHVAINAR 60
METD MFL+FE+DLDNIA GSSSVG+NT SS Q TPT RRRA+SRLL+L+ HVAIN R
Sbjct: 1 METDDMFLQFEEDLDNIAGGSSSVGDNTAGSSSQQTTPTPRRRAQSRLLELERHVAINGR 60
Query: 61 ISMTIASGAEKPISPHVVRFSQAIG--------------TDVGREYIEVVKGDLQRLFVL 120
I MTIA GAEKPISPH VRFSQAIG TDVGREYIEVVKGDLQR FVL
Sbjct: 61 IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVL 120
Query: 121 DFNDQAMNRFVGHHMLTTFKEFRADCPRHFKKYRDQEEARANPPNTLVGRHED 159
DFNDQAMNRFV H MLTTFKEFRADC +HFKKY D EEARANPPN LVGR ED
Sbjct: 121 DFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNALVGRDED 173
BLAST of MELO3C029062.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7UPS7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2300G00010 PE=4 SV=1)
HSP 1 Score: 243 bits (619), Expect = 1.05e-79
Identity = 134/174 (77.01%), Postives = 139/174 (79.89%), Query Frame = 0
Query: 1 METDAMFLEFEDDLDN-IAEGSSSVGNNTRYSSQQPMTPTHRRRAKSRLLDLKHHVAINA 60
METD MFL+FEDDLDN IA GSSSVG+NT SS Q TPT RR A+SRLL+L+ HVAIN
Sbjct: 1 METDDMFLQFEDDLDNNIAGGSSSVGDNTAGSSSQQTTPTPRRCAQSRLLELERHVAING 60
Query: 61 RISMTIASGAEKPISPHVVRFSQAIG--------------TDVGREYIEVVKGDLQRLFV 120
RI MTIA GAEKPISPHVVRFSQAIG TDVGREYIEVVKGDLQRLFV
Sbjct: 61 RIPMTIAPGAEKPISPHVVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRLFV 120
Query: 121 LDFNDQAMNRFVGHHMLTTFKEFRADCPRHFKKYRDQEEARANPPNTLVGRHED 159
LDFNDQAMNRFV H MLTTFKEFRADC RHFKKY D EEARANPPN LVGR ED
Sbjct: 121 LDFNDQAMNRFVEHQMLTTFKEFRADCHRHFKKYSDPEEARANPPNALVGRDED 174
BLAST of MELO3C029062.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7U2R1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00800 PE=4 SV=1)
HSP 1 Score: 247 bits (630), Expect = 4.67e-79
Identity = 132/173 (76.30%), Postives = 139/173 (80.35%), Query Frame = 0
Query: 1 METDAMFLEFEDDLDNIAEGSSSVGNNTRYSSQQPMTPTHRRRAKSRLLDLKHHVAINAR 60
MET+ MFL+FE+DLDNIA GSSSVG+NT SS Q TPT R RA+SRLL+L+HHVAIN R
Sbjct: 1 METNDMFLQFEEDLDNIARGSSSVGDNTAGSSSQQTTPTPRSRAQSRLLELEHHVAINGR 60
Query: 61 ISMTIASGAEKPISPHVVRFSQAIG--------------TDVGREYIEVVKGDLQRLFVL 120
I MTIA GAEKPISPH VRFSQAIG TDVGREYIEVVKGDLQRLFVL
Sbjct: 61 IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLNWTDVGREYIEVVKGDLQRLFVL 120
Query: 121 DFNDQAMNRFVGHHMLTTFKEFRADCPRHFKKYRDQEEARANPPNTLVGRHED 159
DFNDQAMNRFV H MLTTFKEFRADC RHFKKY D EEARANPPN LVGR ED
Sbjct: 121 DFNDQAMNRFVEHQMLTTFKEFRADCHRHFKKYSDPEEARANPPNALVGRDED 173
BLAST of MELO3C029062.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7VD02 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00160 PE=4 SV=1)
HSP 1 Score: 246 bits (629), Expect = 8.18e-79
Identity = 132/160 (82.50%), Postives = 137/160 (85.62%), Query Frame = 0
Query: 1 METDAMFLEFEDDLDNIAEGSSSVGNNTRYSSQQPMTPTHRRRAKSRLLDLKHHVAINAR 60
METD MFL+FE+DLDNIA GSSSVG+NT SSQQ TPT RRRA+SRLL+LK HVAIN R
Sbjct: 176 METDDMFLQFEEDLDNIAGGSSSVGDNTGSSSQQT-TPTPRRRAQSRLLELKRHVAINGR 235
Query: 61 ISMTIASGAEKPISPHVVRFSQAIG-TDVGREYIEVVKGDLQRLFVLDFNDQAMNRFVGH 120
I MTIA GAEKPISPH VRFSQAIG DVGREYIEVVKGDLQRLFVLDFNDQAMNRFV H
Sbjct: 236 ILMTIAPGAEKPISPHAVRFSQAIGWADVGREYIEVVKGDLQRLFVLDFNDQAMNRFVEH 295
Query: 121 HMLTTFKEFRADCPRHFKKYRDQEEARANPPNTLVGRHED 159
M TTFKEFR DC RHFKKY D EEARANPPN LVGR ED
Sbjct: 296 QMFTTFKEFRTDCHRHFKKYSDSEEARANPPNALVGRDED 334
BLAST of MELO3C029062.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3BNG3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00960 PE=4 SV=1)
HSP 1 Score: 244 bits (624), Expect = 2.19e-78
Identity = 131/173 (75.72%), Postives = 138/173 (79.77%), Query Frame = 0
Query: 1 METDAMFLEFEDDLDNIAEGSSSVGNNTRYSSQQPMTPTHRRRAKSRLLDLKHHVAINAR 60
METD MFL+FE+DLDNIA GSSSVG+NT SS Q TPT RRRA+SRLL+L+ HVAIN R
Sbjct: 102 METDDMFLQFEEDLDNIAGGSSSVGDNTAGSSSQQTTPTPRRRAQSRLLELERHVAINGR 161
Query: 61 ISMTIASGAEKPISPHVVRFSQAIG--------------TDVGREYIEVVKGDLQRLFVL 120
I MTIA GAEKPISPH VRFSQAIG TDVGREYIEVVKGDLQR FVL
Sbjct: 162 IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVL 221
Query: 121 DFNDQAMNRFVGHHMLTTFKEFRADCPRHFKKYRDQEEARANPPNTLVGRHED 159
DFNDQAMNRFV H MLTTFKEFRADC +HFKKY D EEARANPPN LVGR ED
Sbjct: 222 DFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNALVGRDED 274
BLAST of MELO3C029062.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7TMQ8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002500 PE=4 SV=1)
HSP 1 Score: 244 bits (624), Expect = 3.78e-78
Identity = 131/173 (75.72%), Postives = 138/173 (79.77%), Query Frame = 0
Query: 1 METDAMFLEFEDDLDNIAEGSSSVGNNTRYSSQQPMTPTHRRRAKSRLLDLKHHVAINAR 60
METD MFL+FE+DLDNIA GSSSVG+NT SS Q TPT RRRA+SRLL+L+ HVAIN R
Sbjct: 1 METDDMFLQFEEDLDNIAGGSSSVGDNTAGSSSQQTTPTPRRRAQSRLLELERHVAINGR 60
Query: 61 ISMTIASGAEKPISPHVVRFSQAIG--------------TDVGREYIEVVKGDLQRLFVL 120
I MTIA GAEKPISPH VRFSQAIG TDVGREYIEVVKGDLQR FVL
Sbjct: 61 IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVL 120
Query: 121 DFNDQAMNRFVGHHMLTTFKEFRADCPRHFKKYRDQEEARANPPNTLVGRHED 159
DFNDQAMNRFV H MLTTFKEFRADC +HFKKY D EEARANPPN LVGR ED
Sbjct: 121 DFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNALVGRDED 173
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0056316.1 | 2.17e-79 | 77.01 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0049620.1 | 9.66e-79 | 76.30 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0065518.1 | 1.69e-78 | 82.50 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
| TYJ99698.1 | 4.52e-78 | 75.72 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0043336.1 | 7.81e-78 | 75.72 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UPS7 | 1.05e-79 | 77.01 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| A0A5A7U2R1 | 4.67e-79 | 76.30 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| A0A5A7VD02 | 8.18e-79 | 82.50 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| A0A5D3BNG3 | 2.19e-78 | 75.72 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A5A7TMQ8 | 3.78e-78 | 75.72 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
