MELO3C029056.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C029056.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCACTA en-spm transposon protein
Locationchr01: 17682018 .. 17684237 (+)
RNA-Seq ExpressionMELO3C029056.jh1
SyntenyMELO3C029056.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGACAGACCCGTCGTGAAAGCCGCATTGGAGAAAATCCTATTTCCGATGCTACGCACAATGCGTCGGAGTGGCATCAGAAAAAGGATATTCCCGACGCGTCAAACACGCGTCGGCCAAACAGCGTCGGCAATAAGACTAAATCAAATTTAAAATACACCTTATTCCTGACGTCATGCACAGTGCGTCGAGAACGACGTCAGGAATAAGGGGTTTTTTCGACACACTATTACACGTCGAGAAAACCTTTTACTTAGCGTCGGGAATACCCTTATTCCCGACGCCATAAAGGGGATCTCATGACGTTTTCGTGCTGCGTCAAGAGATCCCCTTTATAAACGTTTCAGTTCTGTTTTCCACAAAACTAAAAACGAAAGGGAAAGGGAGAAGAGAGAAACGAAGATTCGTCGCCGTTCGTAGCTCGCCGTCGTCCGTTCCATCGTCTGCCGCCCGCCGCCGCCACCTTAGGTAAGTTTAAATATAAAGTTTGTTTAGTTTAAATATAAAGTTTGTTTAGTTTAAATATAAGTTTTAGGGTTTTTTTTTTAAGAAAATTGTTTTAGGATTTTGTTTTAGAATATATTTTTGTTTGTTAAATGTATTTTTGTATAGAATGTGTGTAATTTTTGGTTGAATTAACGTTCTACCCTCAGTTTGTTAATTCCCCAACATGGAAGATTTTTTTTTCCCAAATTTTCTTAGATCTCGAATTTATGGATTTCATCTATTTTTAGCTTGCTTGGAGTTACGTGGGTTCTCATTTTTTTTCTCTTCTGTAGTAATGAACAAGTTGCTAACCCATCGATGGATTCAATTAATACATTAGCAGCATTTCCACAGGGGATGGTAAATATATAATACTAATTGCTATTATTTATCTGCTCTATATGGTTAACTCATCCTATATGTTATTGTTAGGGTGTTGATATAATATTAACTTTACCTTCACTTCCAACTCAAGCTTTTGGGTCAATAACGTCATTTACTTTCCATTTAACATTAATTTCTGCTTATTGGGCTTTTCTTTCAAATTTCAAGCACACAAGTGAGAGGCAAGTGCTAGAGTATTGATCCATTATTTTAAGCTTTTATGTCAATCGATGATTTAAGAGTTACAATAAGTCTCTTTGCAAAACTAACTACAATTTGTTCCGTTAGAAAATCATCATCCTATCGAATAAAACAGAAGCAACACACCTAGAGATTGTAGCTTCAACATGTTCATCTCTGGTATTGTAGCAGGTACTATGACTTTGTAATATTTATAGCACTTAATACTTGCTTAACTATTGTTCTTAAGAAAATTCCTCCAATGTCCAATCATGTTCTCTTTTGCTATAGTTTATGTTTATTCATTGTTTCTTTTTAGCATCATTACTTAGAAGAAGAGTCCCCCATCTTGTAGTTTACTTGATAGTAATTTGTGCTGATTGAGATTAAAATTTCTCAGGGAAGAGTTCGAGTCATGGCATTGGTAATGAAGCTATTTTCAGTTTCTAGCTCTGTGGCATCGGCAGTATACAATGCAAATTTACTAAGCCTACTGGAAAGTGAAATCAATAACCTGCAGCCGTTACTAAGCGTTTTTTTGTATTATGAGAACTACATTTTTTGTATTAAACTTACTAATATTTTTTTAACTTATTCATACTATTAATTTTAAATCTTTTTTTTTAATTTGTGTTTGTATTTCTTAATTTATTAATTTATATTGAATTTGTTTTAATTTAATCCAAAATGTCGGGAAAATTATTTGAGCAATCCGAATGTCGTTGTGAATGTTTGAGCAAAATATTTTAGGGAAAAAATTAGAAATTACATATTTTAAAAAATATATAAAAAGGAATTACCAACGCAATGAAACATCGGGACTAGGATGCATAAGACACATCGGGGAAGGGTTTTTCGACGCATAAAAGACGTCGAGAAAAAAATATCGAAAGAGTCATTCTGAATGCCACGTCATGCATCGGCATAAGATCGATCGGGAAAGGAACTCCCGACTCCACTTTTGCCGACGCATGTCATGGCATCGGGAGAGGCATTCCCGAAGCCGTATTGGTATGGCATCGGGAATGCCTCTCCCAACTCATTTCTCCCGACACTATTCCCGACATCGTGAAAAACGTCGGCATATCCTTTCCTGATTTTTTTCACTTTTTACGATATTTTTGTGAGTCGGTAGTACCCCCGTCTCTTGTAGTGATTGAGAAGTAA

mRNA sequence

ATGCTGGACAGACCCGTCGTGAAAGCCGCATTGGAGAAAATCCTATTTCCGATGCTACGCACAATGCGTCGGAGTGGCATCAGAAAAAGGATATTCCCGACGCGTCAAACACGCGTCGGCCAAACAGCGTCGGCAATAAGACTAAATCAAATTTAAAATACACCTTATTCCTGACGTCATGCACAGTGCGTCGAGAACGACGGAAAGGGAGAAGAGAGAAACGAAGATTCGTCGCCGTTCGTAGCTCGCCGTCGTCCGTTCCATCGTCTGCCGCCCGCCGCCGCCACCTTAGCTTGCTTGGAGTTACGTGGGTTCTCATTTTTTTTCTCTTCTGTAGTAATGAACAAGTTGCTAACCCATCGATGGATTCAATTAATACATTAGCAGCATTTCCACAGGGGATGGGTGTTGATATAATATTAACTTTACCTTCACTTCCAACTCAAGCTTTTGGGTCAATAACAAGCAACACACCTAGAGATTGTAGCTTCAACATGTTCATCTCTGGTATTGTAGCAGCATCATTACTTAGAAGAAGAGTCCCCCATCTTGTAGTTTACTTGATAGGAAGAGTTCGAGTCATGGCATTGGTAATGAAGCTATTTTCAGTTTCTAGCTCTGTGGCATCGGCAGGTTTTTCGACGCATAAAAGACGTCGAGAAAAAAATATCGAAAGAGTCATTCTGAATGCCACGTCATGCATCGGCATAAGATCGATCGGGAAAGGAACTCCCGACTCCACTTTTGCCGACGCATGTCATGGCATCGGGAGAGGCATTCCCGAAGCCGTATTGGTATGGCATCGGGAATGCCTCTCCCAACTCATTTCTCCCGACACTATTCCCGACATCGTGAAAAACGTCGGCATATCCTTTCCTGATTTTTTTCACTTTTTACGATATTTTTGTGAGTCGGTAGTACCCCCGTCTCTTGTAGTGATTGAGAAGTAA

Coding sequence (CDS)

ATGGATTCAATTAATACATTAGCAGCATTTCCACAGGGGATGGGTGTTGATATAATATTAACTTTACCTTCACTTCCAACTCAAGCTTTTGGGTCAATAACAAGCAACACACCTAGAGATTGTAGCTTCAACATGTTCATCTCTGGTATTGTAGCAGCATCATTACTTAGAAGAAGAGTCCCCCATCTTGTAGTTTACTTGATAGGAAGAGTTCGAGTCATGGCATTGGTAATGAAGCTATTTTCAGTTTCTAGCTCTGTGGCATCGGCAGGTTTTTCGACGCATAAAAGACGTCGAGAAAAAAATATCGAAAGAGTCATTCTGAATGCCACGTCATGCATCGGCATAAGATCGATCGGGAAAGGAACTCCCGACTCCACTTTTGCCGACGCATGTCATGGCATCGGGAGAGGCATTCCCGAAGCCGTATTGGTATGGCATCGGGAATGCCTCTCCCAACTCATTTCTCCCGACACTATTCCCGACATCGTGAAAAACGTCGGCATATCCTTTCCTGATTTTTTTCACTTTTTACGATATTTTTGTGAGTCGGTAGTACCCCCGTCTCTTGTAGTGATTGAGAAGTAA

Protein sequence

MDSINTLAAFPQGMGVDIILTLPSLPTQAFGSITSNTPRDCSFNMFISGIVAASLLRRRVPHLVVYLIGRVRVMALVMKLFSVSSSVASAGFSTHKRRREKNIERVILNATSCIGIRSIGKGTPDSTFADACHGIGRGIPEAVLVWHRECLSQLISPDTIPDIVKNVGISFPDFFHFLRYFCESVVPPSLVVIEK
Homology
[Close]
BLAST of MELO3C029056.jh1 vs. NCBI nr
Match: TYK29255.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 3.94e-10
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 0 

Query: 130 DACHGIGRGIPEAVLVWHRECLSQLISPDTIPDIVKNVGISFP 172
           DACHG+G+GIP+ VLV  RECLSQLISPD I D+VKNV  S P
Sbjct: 6   DACHGVGKGIPDVVLVRRRECLSQLISPDAILDVVKNVKASRP 48

[Close]
BLAST of MELO3C029056.jh1 vs. NCBI nr
Match: KAA0059087.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 4.12e-10
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 0 

Query: 130 DACHGIGRGIPEAVLVWHRECLSQLISPDTIPDIVKNVGISFP 172
           DACHG+G+GIP+ VLV  RECLSQLISPD I D+VKNV  S P
Sbjct: 6   DACHGVGKGIPDVVLVRRRECLSQLISPDAILDVVKNVKASRP 48

[Close]
BLAST of MELO3C029056.jh1 vs. NCBI nr
Match: KAA0056276.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK05223.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 3.10e-09
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 0 

Query: 117 RSIGKGTPDSTFADACHGIGRGI-------PEAVLVWHRECLSQLISPDTIPDIVKNVGI 176
           ++  +G PD     + +G+GRGI       P+AVLV H+ECLS+L SPD  PD  KNVGI
Sbjct: 484 KAFRRGLPDVGDFVSKNGVGRGILDVERGIPDAVLVTHQECLSRLTSPDVRPDAPKNVGI 543

[Close]
BLAST of MELO3C029056.jh1 vs. NCBI nr
Match: KAA0036659.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 5.06e-08
Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 0 

Query: 79  KLFSVSSSVASAGFSTHKR---RRE-----------KNIERVILNATSCIGIRSIGKGTP 138
           K+ S SSS  S   S  +R   RRE           K +   I +A + +GIR +G+G  
Sbjct: 46  KMTSASSSTTSCSQSATERCTTRRESSPDERPTSDTKTLGEGIPDAIASVGIRDVGEGIT 105

Query: 139 DSTFADACHGIGRGIPEAVLVWHRECLSQLISPDTIPDIVKNVGISFPDFF 175
           ++  + +   +GRGIP A+LV H   +SQ +S D   D VK+VG  +PD F
Sbjct: 106 ETMKSVSIRDVGRGIPNAMLVMHGGFISQRVSFDVYLDAVKDVGKRYPDVF 156

[Close]
BLAST of MELO3C029056.jh1 vs. NCBI nr
Match: KAA0049602.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK15960.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 6.66e-08
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 102 NIERVILNATSCIGIRSIGKGTPDSTFADACHGIGRGIPEAVLVWHRECLSQLIS 156
           N+   I +A  C GIRSIG  + D+T ADAC+GIGR I + VLV  RECLS+  S
Sbjct: 271 NVGSGITDAACCFGIRSIGNASSDATMADACYGIGRDISDVVLVRRRECLSRRFS 325

[Close]
BLAST of MELO3C029056.jh1 vs. ExPASy TrEMBL
Match: A0A5D3E1C4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00160 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.91e-10
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 0 

Query: 130 DACHGIGRGIPEAVLVWHRECLSQLISPDTIPDIVKNVGISFP 172
           DACHG+G+GIP+ VLV  RECLSQLISPD I D+VKNV  S P
Sbjct: 6   DACHGVGKGIPDVVLVRRRECLSQLISPDAILDVVKNVKASRP 48

[Close]
BLAST of MELO3C029056.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UWQ1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold612G00110 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.00e-10
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 0 

Query: 130 DACHGIGRGIPEAVLVWHRECLSQLISPDTIPDIVKNVGISFP 172
           DACHG+G+GIP+ VLV  RECLSQLISPD I D+VKNV  S P
Sbjct: 6   DACHGVGKGIPDVVLVRRRECLSQLISPDAILDVVKNVKASRP 48

[Close]
BLAST of MELO3C029056.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UPN4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00290 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.50e-09
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 0 

Query: 117 RSIGKGTPDSTFADACHGIGRGI-------PEAVLVWHRECLSQLISPDTIPDIVKNVGI 176
           ++  +G PD     + +G+GRGI       P+AVLV H+ECLS+L SPD  PD  KNVGI
Sbjct: 484 KAFRRGLPDVGDFVSKNGVGRGILDVERGIPDAVLVTHQECLSRLTSPDVRPDAPKNVGI 543

[Close]
BLAST of MELO3C029056.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T5M8 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4533G00110 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.45e-08
Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 0 

Query: 79  KLFSVSSSVASAGFSTHKR---RRE-----------KNIERVILNATSCIGIRSIGKGTP 138
           K+ S SSS  S   S  +R   RRE           K +   I +A + +GIR +G+G  
Sbjct: 46  KMTSASSSTTSCSQSATERCTTRRESSPDERPTSDTKTLGEGIPDAIASVGIRDVGEGIT 105

Query: 139 DSTFADACHGIGRGIPEAVLVWHRECLSQLISPDTIPDIVKNVGISFPDFF 175
           ++  + +   +GRGIP A+LV H   +SQ +S D   D VK+VG  +PD F
Sbjct: 106 ETMKSVSIRDVGRGIPNAMLVMHGGFISQRVSFDVYLDAVKDVGKRYPDVF 156

[Close]
BLAST of MELO3C029056.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CX81 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00790 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.22e-08
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 102 NIERVILNATSCIGIRSIGKGTPDSTFADACHGIGRGIPEAVLVWHRECLSQLIS 156
           N+   I +A  C GIRSIG  + D+T ADAC+GIGR I + VLV  RECLS+  S
Sbjct: 271 NVGSGITDAACCFGIRSIGNASSDATMADACYGIGRDISDVVLVRRRECLSRRFS 325

The following BLAST results are available for this feature:
BLAST of MELO3C029056.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK29255.13.94e-1072.09CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0059087.14.12e-1072.09CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0056276.13.10e-0952.17CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK05223.1 CACTA en-... [more]
KAA0036659.15.06e-0836.04zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa][more]
KAA0049602.16.66e-0854.55reverse transcriptase [Cucumis melo var. makuwa] >TYK15960.1 reverse transcripta... [more]
BLAST of MELO3C029056.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029056.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E1C41.91e-1072.09CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7UWQ12.00e-1072.09CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7UPN41.50e-0952.17CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7T5M82.45e-0836.04Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3CX813.22e-0854.55Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94... [more]
BLAST of MELO3C029056.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029056.jh1.t1MELO3C029056.jh1.t1mRNA