Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAACAAACACTCCTTGGCGTCCTAACTGCATTCACGCTGGCCCAACGTCAGATCTTTCTAACATTGGAGCTACTAATGAACGACAATAGGCGTATCACACATACACCGTTCGATACACGCCATAGAATAAGGCAGCTTGCGTACTTTCGCATGATACACGAGTCAGATCTTGTGTCTCACCAAAGCACGCGAATGGACAGGCGAACTTTCGCAATTCTATGTCATTTACTTCAGACTGTACTTGGTCTTACGTCCACCAAGATTGTCGACGTTGAGGAAATGGTAGCAATGTTCTTGCACGTTCTTGCCCATGACGTGAAAAACCGCGTCATTCAAAGGGAATTTGTACGGTCCAGTGAGACAGTATCGCGACATTTTAACCTTGTACTATTGGCTGTTGTCCGACTATACGAGGAGTTGATAAAGAGACTGTTTCGGTGA
mRNA sequence
ATGGATCAACAAACACTCCTTGGCGTCCTAACTGCATTCACGCTGGCCCAACGTCAGATCTTTCTAACATTGGAGCTACTAATGAACGACAATAGGCGTATCACACATACACCGTTCGATACACGCCATAGAATAAGGCAGCTTGCGTACTTTCGCATGATACACGAGTCAGATCTTGTGTCTCACCAAAGCACGCGAATGGACAGGCGAACTTTCGCAATTCTATGTCATTTACTTCAGACTGTACTTGGTCTTACGTCCACCAAGATTGTCGACGTTGAGGAAATGGTAGCAATGTTCTTGCACGTTCTTGCCCATGACGTGAAAAACCGCGTCATTCAAAGGGAATTTGTACGGTCCAGTGAGACAGTATCGCGACATTTTAACCTTGTACTATTGGCTGTTGTCCGACTATACGAGGAGTTGATAAAGAGACTGTTTCGGTGA
Coding sequence (CDS)
ATGGATCAACAAACACTCCTTGGCGTCCTAACTGCATTCACGCTGGCCCAACGTCAGATCTTTCTAACATTGGAGCTACTAATGAACGACAATAGGCGTATCACACATACACCGTTCGATACACGCCATAGAATAAGGCAGCTTGCGTACTTTCGCATGATACACGAGTCAGATCTTGTGTCTCACCAAAGCACGCGAATGGACAGGCGAACTTTCGCAATTCTATGTCATTTACTTCAGACTGTACTTGGTCTTACGTCCACCAAGATTGTCGACGTTGAGGAAATGGTAGCAATGTTCTTGCACGTTCTTGCCCATGACGTGAAAAACCGCGTCATTCAAAGGGAATTTGTACGGTCCAGTGAGACAGTATCGCGACATTTTAACCTTGTACTATTGGCTGTTGTCCGACTATACGAGGAGTTGATAAAGAGACTGTTTCGGTGA
Protein sequence
MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTPFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLQTVLGLTSTKIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRHFNLVLLAVVRLYEELIKRLFR
Homology
BLAST of MELO3C029050.jh1 vs. NCBI nr
Match:
XP_016899496.1 (PREDICTED: uncharacterized protein LOC107990551 [Cucumis melo])
HSP 1 Score: 237 bits (604), Expect = 9.49e-77
Identity = 127/145 (87.59%), Postives = 135/145 (93.10%), Query Frame = 0
Query: 1 MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTPFDTRHRIRQLAYFRMIHESDLV 60
MDQQTLLGVLTAFTLAQRQI LTLELLMNDNRRIT+TPFDT +RIRQLAYFRMIHESDLV
Sbjct: 1 MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPFDTCNRIRQLAYFRMIHESDLV 60
Query: 61 SHQSTRMDRRTFAILCHLLQTVLGLTSTKIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 120
QSTRMDRRTFAILCHLL+TV L+S +I+DVEEMVAMFLHVLAHDVKN VIQR+FVRS
Sbjct: 61 CRQSTRMDRRTFAILCHLLRTVSVLSSIEIIDVEEMVAMFLHVLAHDVKNHVIQRKFVRS 120
Query: 121 SETVSRHFNLVLLAVVRLYEELIKR 145
ETVSRHFNLVLL VVRLYE+LIKR
Sbjct: 121 GETVSRHFNLVLLVVVRLYEKLIKR 145
BLAST of MELO3C029050.jh1 vs. NCBI nr
Match:
KAA0050301.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK03520.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 236 bits (601), Expect = 1.19e-76
Identity = 123/145 (84.83%), Postives = 136/145 (93.79%), Query Frame = 0
Query: 1 MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTPFDTRHRIRQLAYFRMIHESDLV 60
M+QQTLLGVLT FTLAQRQI LTLELLMN NRRITHTP DTRHRIRQLAYFRMIHESDLV
Sbjct: 1 MNQQTLLGVLTVFTLAQRQILLTLELLMNYNRRITHTPSDTRHRIRQLAYFRMIHESDLV 60
Query: 61 SHQSTRMDRRTFAILCHLLQTVLGLTSTKIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 120
QSTRMD+RTFAILCHLL+TV GL+ST+IVD+EEMVAMFLHVLA++VKNR+IQR+F+RS
Sbjct: 61 CRQSTRMDKRTFAILCHLLRTVYGLSSTEIVDIEEMVAMFLHVLAYNVKNRIIQRKFIRS 120
Query: 121 SETVSRHFNLVLLAVVRLYEELIKR 145
ET+SRHF LVLLAVVRLYE+LIKR
Sbjct: 121 GETISRHFTLVLLAVVRLYEKLIKR 145
BLAST of MELO3C029050.jh1 vs. NCBI nr
Match:
KAA0033801.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22333.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 232 bits (591), Expect = 4.40e-76
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
Query: 28 MNDNRRITHTPFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLQTVLGLTS 87
MNDNRRITHTPFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLQTVLGLTS
Sbjct: 1 MNDNRRITHTPFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLQTVLGLTS 60
Query: 88 TKIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRHFNLVLLAVVRLYEELIKRLF 147
TKIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRHFNLVLLAVVRLYEELIKRLF
Sbjct: 61 TKIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRHFNLVLLAVVRLYEELIKRLF 120
BLAST of MELO3C029050.jh1 vs. NCBI nr
Match:
KAA0036563.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 239 bits (609), Expect = 7.81e-76
Identity = 127/145 (87.59%), Postives = 135/145 (93.10%), Query Frame = 0
Query: 1 MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTPFDTRHRIRQLAYFRMIHESDLV 60
MDQQT+LG+ T FTLAQRQI LTLELLMNDN+RIT+TP DTRHRIRQLAYFRMIHESDLV
Sbjct: 1 MDQQTVLGIPTVFTLAQRQILLTLELLMNDNKRITYTPSDTRHRIRQLAYFRMIHESDLV 60
Query: 61 SHQSTRMDRRTFAILCHLLQTVLGLTSTKIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 120
QSTRMDRRTFAILCHLL+TV L+ST+IVDVEEMVAMFLHVLAHDVKNRVIQREFVRS
Sbjct: 61 CRQSTRMDRRTFAILCHLLRTVSSLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 120
Query: 121 SETVSRHFNLVLLAVVRLYEELIKR 145
ETVS HFNLVLLAVVRLYE+LIKR
Sbjct: 121 GETVSLHFNLVLLAVVRLYEKLIKR 145
BLAST of MELO3C029050.jh1 vs. NCBI nr
Match:
KAA0058874.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 239 bits (609), Expect = 2.13e-75
Identity = 125/145 (86.21%), Postives = 136/145 (93.79%), Query Frame = 0
Query: 1 MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTPFDTRHRIRQLAYFRMIHESDLV 60
MD+QTL+GVLTAFT AQRQI LTLELLMN+N+R+ HTP DTRHRIR+LAYFRMIHESDLV
Sbjct: 1 MDEQTLIGVLTAFTSAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLV 60
Query: 61 SHQSTRMDRRTFAILCHLLQTVLGLTSTKIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 120
QSTRMDRRTFAILCHLL+ V GL+ST+IVDVEEMVAMFLHVLAHDVKNRVIQREFVRS
Sbjct: 61 CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 120
Query: 121 SETVSRHFNLVLLAVVRLYEELIKR 145
ETVSRHFN+VLLAV+RLYEELIKR
Sbjct: 121 GETVSRHFNIVLLAVLRLYEELIKR 145
BLAST of MELO3C029050.jh1 vs. ExPASy TrEMBL
Match:
A0A1S4DU32 (uncharacterized protein LOC107990551 OS=Cucumis melo OX=3656 GN=LOC107990551 PE=4 SV=1)
HSP 1 Score: 237 bits (604), Expect = 4.59e-77
Identity = 127/145 (87.59%), Postives = 135/145 (93.10%), Query Frame = 0
Query: 1 MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTPFDTRHRIRQLAYFRMIHESDLV 60
MDQQTLLGVLTAFTLAQRQI LTLELLMNDNRRIT+TPFDT +RIRQLAYFRMIHESDLV
Sbjct: 1 MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPFDTCNRIRQLAYFRMIHESDLV 60
Query: 61 SHQSTRMDRRTFAILCHLLQTVLGLTSTKIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 120
QSTRMDRRTFAILCHLL+TV L+S +I+DVEEMVAMFLHVLAHDVKN VIQR+FVRS
Sbjct: 61 CRQSTRMDRRTFAILCHLLRTVSVLSSIEIIDVEEMVAMFLHVLAHDVKNHVIQRKFVRS 120
Query: 121 SETVSRHFNLVLLAVVRLYEELIKR 145
ETVSRHFNLVLL VVRLYE+LIKR
Sbjct: 121 GETVSRHFNLVLLVVVRLYEKLIKR 145
BLAST of MELO3C029050.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3BWN8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00100 PE=4 SV=1)
HSP 1 Score: 236 bits (601), Expect = 5.74e-77
Identity = 123/145 (84.83%), Postives = 136/145 (93.79%), Query Frame = 0
Query: 1 MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTPFDTRHRIRQLAYFRMIHESDLV 60
M+QQTLLGVLT FTLAQRQI LTLELLMN NRRITHTP DTRHRIRQLAYFRMIHESDLV
Sbjct: 1 MNQQTLLGVLTVFTLAQRQILLTLELLMNYNRRITHTPSDTRHRIRQLAYFRMIHESDLV 60
Query: 61 SHQSTRMDRRTFAILCHLLQTVLGLTSTKIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 120
QSTRMD+RTFAILCHLL+TV GL+ST+IVD+EEMVAMFLHVLA++VKNR+IQR+F+RS
Sbjct: 61 CRQSTRMDKRTFAILCHLLRTVYGLSSTEIVDIEEMVAMFLHVLAYNVKNRIIQRKFIRS 120
Query: 121 SETVSRHFNLVLLAVVRLYEELIKR 145
ET+SRHF LVLLAVVRLYE+LIKR
Sbjct: 121 GETISRHFTLVLLAVVRLYEKLIKR 145
BLAST of MELO3C029050.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3DFK7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00500 PE=4 SV=1)
HSP 1 Score: 232 bits (591), Expect = 2.13e-76
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
Query: 28 MNDNRRITHTPFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLQTVLGLTS 87
MNDNRRITHTPFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLQTVLGLTS
Sbjct: 1 MNDNRRITHTPFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLQTVLGLTS 60
Query: 88 TKIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRHFNLVLLAVVRLYEELIKRLF 147
TKIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRHFNLVLLAVVRLYEELIKRLF
Sbjct: 61 TKIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRHFNLVLLAVVRLYEELIKRLF 120
BLAST of MELO3C029050.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7T0Z8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00710 PE=4 SV=1)
HSP 1 Score: 239 bits (609), Expect = 3.78e-76
Identity = 127/145 (87.59%), Postives = 135/145 (93.10%), Query Frame = 0
Query: 1 MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTPFDTRHRIRQLAYFRMIHESDLV 60
MDQQT+LG+ T FTLAQRQI LTLELLMNDN+RIT+TP DTRHRIRQLAYFRMIHESDLV
Sbjct: 1 MDQQTVLGIPTVFTLAQRQILLTLELLMNDNKRITYTPSDTRHRIRQLAYFRMIHESDLV 60
Query: 61 SHQSTRMDRRTFAILCHLLQTVLGLTSTKIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 120
QSTRMDRRTFAILCHLL+TV L+ST+IVDVEEMVAMFLHVLAHDVKNRVIQREFVRS
Sbjct: 61 CRQSTRMDRRTFAILCHLLRTVSSLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 120
Query: 121 SETVSRHFNLVLLAVVRLYEELIKR 145
ETVS HFNLVLLAVVRLYE+LIKR
Sbjct: 121 GETVSLHFNLVLLAVVRLYEKLIKR 145
BLAST of MELO3C029050.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7UUT3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00380 PE=3 SV=1)
HSP 1 Score: 239 bits (609), Expect = 1.03e-75
Identity = 125/145 (86.21%), Postives = 136/145 (93.79%), Query Frame = 0
Query: 1 MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTPFDTRHRIRQLAYFRMIHESDLV 60
MD+QTL+GVLTAFT AQRQI LTLELLMN+N+R+ HTP DTRHRIR+LAYFRMIHESDLV
Sbjct: 1 MDEQTLIGVLTAFTSAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLV 60
Query: 61 SHQSTRMDRRTFAILCHLLQTVLGLTSTKIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 120
QSTRMDRRTFAILCHLL+ V GL+ST+IVDVEEMVAMFLHVLAHDVKNRVIQREFVRS
Sbjct: 61 CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 120
Query: 121 SETVSRHFNLVLLAVVRLYEELIKR 145
ETVSRHFN+VLLAV+RLYEELIKR
Sbjct: 121 GETVSRHFNIVLLAVLRLYEELIKR 145
BLAST of MELO3C029050.jh1 vs. TAIR 10
Match:
AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 61.2 bits (147), Expect = 7.9e-10
Identity = 32/82 (39.02%), Postives = 51/82 (62.20%), Query Frame = 0
Query: 63 QSTRMDRRTFAILCHLLQTVLGLTSTKIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSE 122
++ RMD+ F LC LLQT L T + +E +A+FL ++ H+++ R +Q F S E
Sbjct: 44 ENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGE 103
Query: 123 TVSRHFNLVLLAVVRLYEELIK 145
T+SRHFN VL AV+ + ++ +
Sbjct: 104 TISRHFNNVLNAVIAISKDFFQ 125
BLAST of MELO3C029050.jh1 vs. TAIR 10
Match:
AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 45.1 bits (105), Expect = 5.9e-05
Identity = 30/91 (32.97%), Postives = 47/91 (51.65%), Query Frame = 0
Query: 54 IHESDLVSHQSTRMDRRTFAILCHLLQTVLGLTSTKIVDVEEMVAMFLHVLAHDVKNRVI 113
I+ +++ RM F LC +L GL S+ + ++E VA+FL + A + R I
Sbjct: 17 IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76
Query: 114 QREFVRSSETVSRHFNLVLLAVVRLYEELIK 145
F + ET+ R F+ VL A+ RL E I+
Sbjct: 77 ALRFGHAQETIWRKFHDVLKAMERLAVEYIR 107
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_016899496.1 | 9.49e-77 | 87.59 | PREDICTED: uncharacterized protein LOC107990551 [Cucumis melo] | [more] |
| KAA0050301.1 | 1.19e-76 | 84.83 | retrotransposon protein [Cucumis melo var. makuwa] >TYK03520.1 retrotransposon p... | [more] |
| KAA0033801.1 | 4.40e-76 | 100.00 | retrotransposon protein [Cucumis melo var. makuwa] >TYK22333.1 retrotransposon p... | [more] |
| KAA0036563.1 | 7.81e-76 | 87.59 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0058874.1 | 2.13e-75 | 86.21 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A1S4DU32 | 4.59e-77 | 87.59 | uncharacterized protein LOC107990551 OS=Cucumis melo OX=3656 GN=LOC107990551 PE=... | [more] |
| A0A5D3BWN8 | 5.74e-77 | 84.83 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3DFK7 | 2.13e-76 | 100.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7T0Z8 | 3.78e-76 | 87.59 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7UUT3 | 1.03e-75 | 86.21 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G41980.1 | 7.9e-10 | 39.02 | CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... | [more] |
| AT5G28730.1 | 5.9e-05 | 32.97 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
