MELO3C029050 (gene) Melon (DHL92) v4

Overview
NameMELO3C029050
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr02: 4280529 .. 4280978 (-)
RNA-Seq ExpressionMELO3C029050
SyntenyMELO3C029050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCAACAAACACTTCTTGGCGTCCTAACTGCATTCACACTGGCCCAACGTCAGATCTTACTAACGTTGGAGCTACTAATGAACGACAATAGGCGTATCACATATACACCGTCCGATACACGCCATAGAATAAGGCAGCTTGCATACTTTCGCATGATACACGAGTTAGATCTTGTGTGTGTCGCCAAAGCACGCAAATGGACAGGCGAACATTCGCAATTCTATGTCATTTACTTCGGACTGTATCTGGTCTTTCGTCCACCGAGATTGTCGACATTGAAGAAATGGTAGCAATGTTCTTGCACGTCCTTGCCCATGACGTGAAGAACCGCGTCATTCAAAGGGAATTTGTACGGTTCGGTGAGACAGTATCGCGACATTTTAACCTTGTACTATTGGTTGTCGTCCGACTATACGAGGAGTTGATAAAGCGACCTGTTCCAGTGA

mRNA sequence

ATGGACCAACAAACACTTCTTGGCGTCCTAACTGCATTCACACTGGCCCAACGTCAGATCTTACTAACGTTGGAGCTACTAATGAACGACAATAGGCGTATCACATATACACCGTCCGATACACGCCATAGAATAAGGCAGCTTGCATACTTTCGCATGATACACGAGTTAGATCTTGTGTGTGTCGCCAAAGCACGCAAATGGACAGGCGAACATTCGCAATTCTATGTCATTTACTTCGGACTGTATCTGGTCTTTCGTCCACCGAGATTGTCGACATTGAAGAAATGGTAGCAATGTTCTTGCACGTCCTTGCCCATGACGTGAAGAACCGCGTCATTCAAAGGGAATTTGTACGGTTCGGTGAGACAGTATCGCGACATTTTAACCTTGTACTATTGGTTGTCGTCCGACTATACGAGGAGTTGATAAAGCGACCTGTTCCAGTGA

Coding sequence (CDS)

ATGGACCAACAAACACTTCTTGGCGTCCTAACTGCATTCACACTGGCCCAACGTCAGATCTTACTAACGTTGGAGCTACTAATGAACGACAATAGGCGTATCACATATACACCGTCCGATACACGCCATAGAATAAGGCAGCTTGCATACTTTCGCATGATACACGAGTTAGATCTTGTGTGTGTCGCCAAAGCACGCAAATGGACAGGCGAACATTCGCAATTCTATGTCATTTACTTCGGACTGTATCTGGTCTTTCGTCCACCGAGATTGTCGACATTGAAGAAATGGTAG

Protein sequence

MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPSDTRHRIRQLAYFRMIHELDLVCVAKARKWTGEHSQFYVIYFGLYLVFRPPRLSTLKKW
Homology
BLAST of MELO3C029050 vs. NCBI nr
Match: KAA0036563.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.1e-21
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 0

Query: 1  MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPSDTRHRIRQLAYFRMIHELDLV 60
          MDQQT+LG+ T FTLAQRQILLTLELLMNDN+RITYTPSDTRHRIRQLAYFRMIHE DLV
Sbjct: 1  MDQQTVLGIPTVFTLAQRQILLTLELLMNDNKRITYTPSDTRHRIRQLAYFRMIHESDLV 60

Query: 61 CVAKAR 67
          C    R
Sbjct: 61 CRQSTR 66

BLAST of MELO3C029050 vs. NCBI nr
Match: XP_016899496.1 (PREDICTED: uncharacterized protein LOC107990551 [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 4.7e-21
Identity = 58/66 (87.88%), Postives = 59/66 (89.39%), Query Frame = 0

Query: 1  MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPSDTRHRIRQLAYFRMIHELDLV 60
          MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTP DT +RIRQLAYFRMIHE DLV
Sbjct: 1  MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPFDTCNRIRQLAYFRMIHESDLV 60

Query: 61 CVAKAR 67
          C    R
Sbjct: 61 CRQSTR 66

BLAST of MELO3C029050 vs. NCBI nr
Match: KAA0050301.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK03520.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 8.0e-21
Identity = 57/66 (86.36%), Postives = 59/66 (89.39%), Query Frame = 0

Query: 1  MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPSDTRHRIRQLAYFRMIHELDLV 60
          M+QQTLLGVLT FTLAQRQILLTLELLMN NRRIT+TPSDTRHRIRQLAYFRMIHE DLV
Sbjct: 1  MNQQTLLGVLTVFTLAQRQILLTLELLMNYNRRITHTPSDTRHRIRQLAYFRMIHESDLV 60

Query: 61 CVAKAR 67
          C    R
Sbjct: 61 CRQSTR 66

BLAST of MELO3C029050 vs. NCBI nr
Match: KAA0054851.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22457.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 3.0e-20
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 0

Query: 1  MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPSDTRHRIRQLAYFRMIHELDLV 60
          MDQQTLLGVLTAFTL QRQILLTLELLMNDNRRIT+TP DTRHRIRQLAYF MIH+ DLV
Sbjct: 1  MDQQTLLGVLTAFTLVQRQILLTLELLMNDNRRITHTPFDTRHRIRQLAYFDMIHDSDLV 60

Query: 61 C 62
          C
Sbjct: 61 C 61

BLAST of MELO3C029050 vs. NCBI nr
Match: KAA0048777.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK31557.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 4.0e-20
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 1  MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPSDTRHRIRQLAYFRMIHELDLV 60
          MD+QTL+GVLTAFTLAQRQILLTLELLMN+N+R+ +TPSDTRHRIR+LAYFRMIHE DLV
Sbjct: 1  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPSDTRHRIRELAYFRMIHESDLV 60

Query: 61 CVAKAR 67
          C    R
Sbjct: 61 CRQSTR 66

BLAST of MELO3C029050 vs. ExPASy TrEMBL
Match: A0A5A7T0Z8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00710 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.0e-21
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 0

Query: 1  MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPSDTRHRIRQLAYFRMIHELDLV 60
          MDQQT+LG+ T FTLAQRQILLTLELLMNDN+RITYTPSDTRHRIRQLAYFRMIHE DLV
Sbjct: 1  MDQQTVLGIPTVFTLAQRQILLTLELLMNDNKRITYTPSDTRHRIRQLAYFRMIHESDLV 60

Query: 61 CVAKAR 67
          C    R
Sbjct: 61 CRQSTR 66

BLAST of MELO3C029050 vs. ExPASy TrEMBL
Match: A0A1S4DU32 (uncharacterized protein LOC107990551 OS=Cucumis melo OX=3656 GN=LOC107990551 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.3e-21
Identity = 58/66 (87.88%), Postives = 59/66 (89.39%), Query Frame = 0

Query: 1  MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPSDTRHRIRQLAYFRMIHELDLV 60
          MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTP DT +RIRQLAYFRMIHE DLV
Sbjct: 1  MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPFDTCNRIRQLAYFRMIHESDLV 60

Query: 61 CVAKAR 67
          C    R
Sbjct: 61 CRQSTR 66

BLAST of MELO3C029050 vs. ExPASy TrEMBL
Match: A0A5D3BWN8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00100 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.9e-21
Identity = 57/66 (86.36%), Postives = 59/66 (89.39%), Query Frame = 0

Query: 1  MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPSDTRHRIRQLAYFRMIHELDLV 60
          M+QQTLLGVLT FTLAQRQILLTLELLMN NRRIT+TPSDTRHRIRQLAYFRMIHE DLV
Sbjct: 1  MNQQTLLGVLTVFTLAQRQILLTLELLMNYNRRITHTPSDTRHRIRQLAYFRMIHESDLV 60

Query: 61 CVAKAR 67
          C    R
Sbjct: 61 CRQSTR 66

BLAST of MELO3C029050 vs. ExPASy TrEMBL
Match: A0A5D3DFI6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3009G00050 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-20
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 0

Query: 1  MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPSDTRHRIRQLAYFRMIHELDLV 60
          MDQQTLLGVLTAFTL QRQILLTLELLMNDNRRIT+TP DTRHRIRQLAYF MIH+ DLV
Sbjct: 1  MDQQTLLGVLTAFTLVQRQILLTLELLMNDNRRITHTPFDTRHRIRQLAYFDMIHDSDLV 60

Query: 61 C 62
          C
Sbjct: 61 C 61

BLAST of MELO3C029050 vs. ExPASy TrEMBL
Match: A0A5A7U3B3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00460 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.9e-20
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 1  MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPSDTRHRIRQLAYFRMIHELDLV 60
          MD+QTL+GVLTAFTLAQRQILLTLELLMN+N+R+ +TPSDTRHRIR+LAYFRMIHE DLV
Sbjct: 1  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPSDTRHRIRELAYFRMIHESDLV 60

Query: 61 CVAKAR 67
          C    R
Sbjct: 61 CRQSTR 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0036563.12.1e-2184.85retrotransposon protein [Cucumis melo var. makuwa][more]
XP_016899496.14.7e-2187.88PREDICTED: uncharacterized protein LOC107990551 [Cucumis melo][more]
KAA0050301.18.0e-2186.36retrotransposon protein [Cucumis melo var. makuwa] >TYK03520.1 retrotransposon p... [more]
KAA0054851.13.0e-2090.16retrotransposon protein [Cucumis melo var. makuwa] >TYK22457.1 retrotransposon p... [more]
KAA0048777.14.0e-2080.30retrotransposon protein [Cucumis melo var. makuwa] >TYK31557.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T0Z81.0e-2184.85Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S4DU322.3e-2187.88uncharacterized protein LOC107990551 OS=Cucumis melo OX=3656 GN=LOC107990551 PE=... [more]
A0A5D3BWN83.9e-2186.36Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DFI61.5e-2090.16Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U3B31.9e-2080.30Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029050.1MELO3C029050.1mRNA