MELO3C028872 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028872
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr01: 11211223 .. 11212330 (+)
RNA-Seq Expression	MELO3C028872
Synteny	MELO3C028872

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAGAACAAGAGGGGGATTGGAAGCCACTCAATATGTGGATGTTGAAGAGATGGTTGCGATTCTTTTGCATATTGTAGCACACGATGTTAAGAATAAGGTAGCTCGACGATATTTTGCAAGGTCTGATGAAACAGTGTCAAGACACCTCAATGTTGTTCTTAACGCAGTTCTTAGACTCCATGAAATCCTTCTTAAGCAACCTGATCCAGTGACCCATTCATGTTCACACGAGAAGTGGCGATGGTTTCAGGTATATAATTGGCCCGCCACTACTTTGCAGTGGATATGTGCTTCTGTGAATTGACAAATAAAATGTCTTTTATCCCTTGACAGAATTGTCTAGGTGCATTAGATGGTACACACATCAAAGTGAATGTAAGTATGAGTGATCACCCAAGGTATAGGTCTAGAAAGGGTGACATTACCACAAATGTACTTGGTGTGTGTTCGCAAAATGGTGAGTACATATTTGTCATGCCTGGATGGGAAGGGTCTGCATCAGATTCGAGAGTACTTAGAGATGTAGTGTCACGACCTACTGGTCTAAAAGTCCCAAAGGGTAAGATGATGCATTCTTCTCCCCACACAGTGGTGTTAGACCATATGCTCATTTAATATGGTATACCCTAATAATTCATTATGGGTGCAACATGGGCAGGTTACTACTACTTGTGTGATGCTGGTTATCTAAATGCTGAAGGATTCTTCGCTCCATAACGAGGTCAACGTTATCATCTAACTGAATGGCGTGGAGGAAACCCACCAAAATGCTCGAAAGAGCTATTTAACATGGGCATTCCTCTGCTAGAAACGTTATTGAAAGAGCATTTGGATCATTGAAGGGTCGGTGGGCCATTCTACGAGGGAGATCCTATTACCCCATTGACATACAATGTAAAATAATAACAACATGTTGCCTCTTACATAACTTGATACATAGAGAAATGGGTTCAGAGGCAACATTTGAGGAGCCACATCTTGGTGAAGATGATTCAAGCGAGATGAACATTGAGAATATAAACTTCGTGGAAACGACTAATGTCTAGACTGAATGGAGGGATAATCTTGCAAACCAAATGTTTGATGATTAGAATAATGTATGA

mRNA sequence

ATGTTAAGAACAAGAGGGGGATTGGAAGCCACTCAATATGTGGATGTTGAAGAGATGGTTGCGATTCTTTTGCATATTGTAGCACACGATGTTAAGAATAAGAATTGTCTAGGTGCATTAGATGGTACACACATCAAAGTGAATGTAAGTGCAACATGGGCAGGTTACTACTACTTGTGTGATGCTGGTTATCTAAATGCTGAAGGATTCTTCGCTCCATAACGAGGTCAACGTTATCATCTAACTGAATGGCGTGGAGGAAACCCACCAAAATGCTCGAAAGAGCTATTTAACATGGGCATTCCTCTGCTAGAAACGTTATTGAAAGAGCATTTGGATCATTGAAGGGTCGGTGGGCCATTCTACGAGGGAGATCCTATTACCCCAGCAACATTTGAGGAGCCACATCTTGGTGAAGATGATTCAAGCGAGATGAACATTGAGAATATAAACTTCGTGGAAACGACTAATGTCTAGACTGAATGGAGGGATAATCTTGCAAACCAAATGTTTGATGATTAGAATAATGTATGA

Coding sequence (CDS)

ATGTTAAGAACAAGAGGGGGATTGGAAGCCACTCAATATGTGGATGTTGAAGAGATGGTTGCGATTCTTTTGCATATTGTAGCACACGATGTTAAGAATAAGAATTGTCTAGGTGCATTAGATGGTACACACATCAAAGTGAATGTAAGTGCAACATGGGCAGGTTACTACTACTTGTGTGATGCTGGTTATCTAAATGCTGAAGGATTCTTCGCTCCATAA

Protein sequence

MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKNCLGALDGTHIKVNVSATWAGYYYLCDAGYLNAEGFFAP

Homology

[Close]

BLAST of MELO3C028872 vs. NCBI nr
Match: XP_008463037.1 (PREDICTED: uncharacterized protein LOC103501276 [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 70/179 (39.11%), Postives = 71/179 (39.66%), Query Frame = 0


Query: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNK-------------------------- 60
           MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNK                          
Sbjct: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLR 60

Query: 61  -------------------------NCLGALDGTHIKVNVSAT----------------- 74
                                    NCLGALDGTHIKVNVS +                 
Sbjct: 61  LHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVL 120

[Close]

BLAST of MELO3C028872 vs. NCBI nr
Match: KAA0031842.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 2.0e-16
Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNK------NCLGALDGTHIKVNVSA--- 60
           +LR   GL +T+ VDVEEMVA+ LH++AHDVKN+      NCLGALD T+IKVNV A   
Sbjct: 51  LLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFNCLGALDETYIKVNVLAGDR 110

Query: 61  --TWAGYYYLCDAGYLNAEGFFAP 74
                 YYYLCDAGY NAEGF AP
Sbjct: 111 PTFRTRYYYLCDAGYPNAEGFLAP 134

[Close]

BLAST of MELO3C028872 vs. NCBI nr
Match: KAA0042479.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 50/92 (54.35%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 2   LRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKNCLGALDGTHIKVNVSA-------TWA 61
           L+T  GL +T+ VDVEEMVA+ LH++AHDVK +NCLGALD T+IKVNV         T  
Sbjct: 60  LKTVAGLSSTKIVDVEEMVAMFLHVLAHDVKYRNCLGALDETYIKVNVPVADHPTFRTRK 119

Query: 62  G--------------YYYLCDAGYLNAEGFFA 73
           G              YYYLCDAGY NAEGF A
Sbjct: 120 GEITTNVLSLVFETLYYYLCDAGYPNAEGFLA 151

[Close]

BLAST of MELO3C028872 vs. NCBI nr
Match: TYK06362.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 5.5e-14
Identity = 48/73 (65.75%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 1  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNK-----------------------NCL 51
          MLRTRGGLEATQYVDVEEMVAI LHIVAHDVKN+                       NCL
Sbjct: 1  MLRTRGGLEATQYVDVEEMVAIFLHIVAHDVKNRVARRHFARSGETVSRHFNAVLNANCL 60

[Close]

BLAST of MELO3C028872 vs. NCBI nr
Match: TYJ96934.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 9.3e-14
Identity = 56/141 (39.72%), Postives = 61/141 (43.26%), Query Frame = 0


Query: 2   LRTRGGLEATQYVDVEEMVAILLHIVAHDVKNK--------------------------- 61
           LRTRGGLEATQYV VEEMV I LHI+AH+VKN+                           
Sbjct: 13  LRTRGGLEATQYVHVEEMVVIFLHIIAHNVKNRVARRHFVRSGETVSRHFNAVLNTVLRL 72

Query: 62  ------------------------NCLGALDGTHIKVNVSATW----------------- 74
                                   NC+GALDGTHIKVNV +                   
Sbjct: 73  HEILLKQPDLVTHSCSHEKWRWFQNCIGALDGTHIKVNVRSASDLRVLRDAVSRPTGLKV 132

[Close]

BLAST of MELO3C028872 vs. ExPASy TrEMBL
Match: A0A1S3CJV8 (uncharacterized protein LOC103501276 OS=Cucumis melo OX=3656 GN=LOC103501276 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.4e-17
Identity = 70/179 (39.11%), Postives = 71/179 (39.66%), Query Frame = 0


Query: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNK-------------------------- 60
           MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNK                          
Sbjct: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLR 60

Query: 61  -------------------------NCLGALDGTHIKVNVSAT----------------- 74
                                    NCLGALDGTHIKVNVS +                 
Sbjct: 61  LHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVL 120

[Close]

BLAST of MELO3C028872 vs. ExPASy TrEMBL
Match: A0A5A7SL78 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00920 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 9.7e-17
Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNK------NCLGALDGTHIKVNVSA--- 60
           +LR   GL +T+ VDVEEMVA+ LH++AHDVKN+      NCLGALD T+IKVNV A   
Sbjct: 51  LLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFNCLGALDETYIKVNVLAGDR 110

Query: 61  --TWAGYYYLCDAGYLNAEGFFAP 74
                 YYYLCDAGY NAEGF AP
Sbjct: 111 PTFRTRYYYLCDAGYPNAEGFLAP 134

[Close]

BLAST of MELO3C028872 vs. ExPASy TrEMBL
Match: A0A5A7TM86 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00260 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.0e-15
Identity = 50/92 (54.35%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 2   LRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKNCLGALDGTHIKVNVSA-------TWA 61
           L+T  GL +T+ VDVEEMVA+ LH++AHDVK +NCLGALD T+IKVNV         T  
Sbjct: 60  LKTVAGLSSTKIVDVEEMVAMFLHVLAHDVKYRNCLGALDETYIKVNVPVADHPTFRTRK 119

Query: 62  G--------------YYYLCDAGYLNAEGFFA 73
           G              YYYLCDAGY NAEGF A
Sbjct: 120 GEITTNVLSLVFETLYYYLCDAGYPNAEGFLA 151

[Close]

BLAST of MELO3C028872 vs. ExPASy TrEMBL
Match: A0A5D3C542 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00540 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.6e-14
Identity = 48/73 (65.75%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 1  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNK-----------------------NCL 51
          MLRTRGGLEATQYVDVEEMVAI LHIVAHDVKN+                       NCL
Sbjct: 1  MLRTRGGLEATQYVDVEEMVAIFLHIVAHDVKNRVARRHFARSGETVSRHFNAVLNANCL 60

[Close]

BLAST of MELO3C028872 vs. ExPASy TrEMBL
Match: A0A5D3BD50 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00390 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.5e-14
Identity = 56/141 (39.72%), Postives = 61/141 (43.26%), Query Frame = 0


Query: 2   LRTRGGLEATQYVDVEEMVAILLHIVAHDVKNK--------------------------- 61
           LRTRGGLEATQYV VEEMV I LHI+AH+VKN+                           
Sbjct: 13  LRTRGGLEATQYVHVEEMVVIFLHIIAHNVKNRVARRHFVRSGETVSRHFNAVLNTVLRL 72

Query: 62  ------------------------NCLGALDGTHIKVNVSATW----------------- 74
                                   NC+GALDGTHIKVNV +                   
Sbjct: 73  HEILLKQPDLVTHSCSHEKWRWFQNCIGALDGTHIKVNVRSASDLRVLRDAVSRPTGLKV 132

The following BLAST results are available for this feature:

BLAST of MELO3C028872 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463037.1	1.5e-16	39.11	PREDICTED: uncharacterized protein LOC103501276 [Cucumis melo]	[more]
KAA0031842.1	2.0e-16	60.71	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042479.1	1.4e-14	54.35	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK06362.1	5.5e-14	65.75	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ96934.1	9.3e-14	39.72	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C028872 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CJV8	7.4e-17	39.11	uncharacterized protein LOC103501276 OS=Cucumis melo OX=3656 GN=LOC103501276 PE=...	[more]
A0A5A7SL78	9.7e-17	60.71	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TM86	7.0e-15	54.35	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C542	2.6e-14	65.75	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BD50	4.5e-14	39.72	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of MELO3C028872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028872.1	MELO3C028872.1	mRNA