Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAATGAGGGACGTACGACAACGAAAGTGAGCGATTCAAATCGGTTCTTCTGGGCAGCGTCGGGTGGCGTACGGAGGAGAAGGAAGTTGGCAAAGGCAGGGATTGGACCGAAGAAGAACGCGCGATTGAAGATAGAGACGGTCGGAAGTCGACTGGTCGC ATGAGACAGAGAGGAGGATCGGAAATGCGGCCGCTGCGAACGGCTGTACGTTGGCATTGCGAGGAAGACGACG ATAGAGACGGAGGCGTGCGGAGGCAGTCGGTTGGACGAAGGAGAAGGTTGGGACGGAGGGCGGCTGTGTGTCGAAATGAAGAGAAATGGAGGTCGGTGGAGCGTGGCATGGTCGGCTATCGAGTGAAGAAAAAGAAGAAGAA GAAGAAGAAGAAGAAGATGATGATGATGATGAAGAAGAAGGAGAAATCGGGGGGGGGGGGCGCAGGGACTTAGGATTTCTTTT TT mRNA sequence
ATGGCCGAATGAGGGACGTACGACAACGAAAGTGAGCGATTCAAATCGGTTCTTCTGGGCAGCGTCGGGTGGCGTACGGAGGAGAAGGAAGTTGGCAAAGGCAGGGATTGGACCGAAGAAGAACGCGCGATTGAAGATAGAGACGGTCGGAAGTCGACTGGTCGCATGAGACAGAGAGGAGGATCGGAAATGCGGCCGCTGCGAACGGCTGTACGTTGGCATTGCGAGGAAGACGACGTTGGACGAAGGAGAAGGTTGGGACGGAGGGCGGCTGTGTGTCGAAATGAAGAGAAATGGAGGTCGGTGGAGCGTGGCATGGTCGGCTATCGAGTGAAGAAAAAGAAGAAGAAGAGAAATCGGGGGGGGGGGGCGCAGGGACTTAGGATTTCTTTTTT Coding sequence (CDS)
ATGAGACAGAGAGGAGGATCGGAAATGCGGCCGCTGCGAACGGCTGTACGTTGGCATTGCGAGGAAGACGACGTTGGACGAAGGAGAAGGTTGGGACGGAGGGCGGCTGTGTGTCGAAATGAAGAGAAATGGAGGTCGGTGGAGCGTGGCATGGTCGGCTATCGAGTGAAGAAAAAGAAGAAGAAGAGAAATCGGGGGGGGGGGGCGCAGGGACTTAGGATTTCTTTT Protein sequence
MRQRGGSEMRPLRTAVRWHCEEDDVGRRRRLGRRAAVCRNEEKWRSVERGMVGYRVKKKKKKRNRGGGAQGLRISF
Homology
BLAST of MELO3C028828 vs. NCBI nr
Match:
KAA0025928.1 (uncharacterized protein E6C27_scaffold34G002290 [Cucumis melo var. makuwa])
HSP 1 Score: 57.8 bits (138), Expect = 4.8e-05
Identity = 32/55 (58.18%), Postives = 35/55 (63.64%), Query Frame = 0
Query: 1 MRQRGGSEMRPLRTAVRWHCEEDDVG---RRRRLGRRAAVCRNEEKWRSVERGMV 53 +RQRG SEM LRT VRW CE DD G AAVCRNEEKW S ERG++ Sbjct: 57 VRQRGVSEMGRLRTVVRWRCEADDNGDGETTTETETDAAVCRNEEKWSSEERGVI 111
BLAST of MELO3C028828 vs. ExPASy TrEMBL
Match:
A0A5A7SIC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002290 PE=4 SV=1)
HSP 1 Score: 57.8 bits (138), Expect = 2.3e-05
Identity = 32/55 (58.18%), Postives = 35/55 (63.64%), Query Frame = 0
Query: 1 MRQRGGSEMRPLRTAVRWHCEEDDVG---RRRRLGRRAAVCRNEEKWRSVERGMV 53 +RQRG SEM LRT VRW CE DD G AAVCRNEEKW S ERG++ Sbjct: 57 VRQRGVSEMGRLRTVVRWRCEADDNGDGETTTETETDAAVCRNEEKWSSEERGVI 111
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAA0025928.1 4.8e-05 58.18 uncharacterized protein E6C27_scaffold34G002290 [Cucumis melo var. makuwa] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5A7SIC6 2.3e-05 58.18 Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
A T G G C C G A A T G A G G G A C G T A C G A C A A C G A A A G T G A G C G A T T C A A A T C G G T T C T T C T G G G C A G C G T C G G G T G G C G T A C G G A G G A G A A G G A A G T T G G C A A A G G C A G G G A T T G G A C C G A A G A A G A A C G C G C G A T T G A A G A T A G A G A C G G T C G G A A G T C G A C T G G T C G C A T G A G A C A G A G A G G A G G A T C G G A A A T G C G G C C G C T G C G A A C G G C T G T A C G T T G G C A T T G C G A G G A A G A C G A C G T T G G A C G A A G G A G A A G G T T G G G A C G G A G G G C G G C T G T G T G T C G A A A T G A A G A G A A A T G G A G G T C G G T G G A G C G T G G C A T G G T C G G C T A T C G A G T G A A G A A A A A G A A G A A G A A G A G A A A T C G G G G G G G G G G G G C G C A G G G A C T T A G G A T T T C T T T T T T 50 100 150 200 250 300 350 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 57..76
Relationships
The following mRNA feature(s) are a part of this gene: