MELO3C028766 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028766
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Protein ROOT HAIR DEFECTIVE 3
Location	chr01: 18017220 .. 18020485 (-)
RNA-Seq Expression	MELO3C028766
Synteny	MELO3C028766

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACTTTCTTCCCTCTCTTCTTTGACAGCTGACGCCACCACCACCAGCATACATCAGTTTCTTCCATCCTTGTCGTCGTCTGTGTTCTGTCGTTGTGCTCGTCGTCGCCACCACTGTGCCCAGTCGTTGCATTTGCAAAATATTTATCGTTTGCTCCTCTCGAGCATTTAACATTTTGAAAATCTTAGCGAACAAACATAGATAGTCAAGCCTCCTTTTCGAAGATCAAATCCCATCTCCATCTTCATCACCGACTTTCGAGAAGGTTAGACCCTTTTCTTTCTTTTAAAATCTGTATTTTTCTCTCTCTTCTTAATCGATCTCATACATTCTTTGGCCCTTTTCCAGTTTCCAATCTGCATCAGCTTTAATTTAGATGAAACATACAAAGTAATCATCCTGTGACAAAAAGAGTTGTCTTATGAAAACCACAAGAGTTCCTTTTCTTTTCATTAATTTCTTATTTTGAAGAGTTAATCCATTTGTAGCTTACATTATTGTTTGGTGTGATGAACACGGCTATAATTTCTTTTGGCCAAGCCGGTTATGGCAATTTATTTTTCATAATAAATATCACACTTGCTACAATTTATCAATTTATCGATGCTTACCTACGTCTAGGTTTTATTAACCAAATGGATTTCTTTACCGAAGATTTAATATAAATTCATGAGTTAATGTGTTGTCTCTCATTTTGTGCCTTCAAAATTTATTTCAATGAAGATTTGTTGGTGTCTGTTTTCTCCCTACGATTTTGAAGTCGAACAATTTTTGAAGTGGGCATACTGTTTTAATTTCGATGTTTTCGTTGCATACAAACAATTCACATTGATACTTCAAGTCTTAGGTCCAAGGATTGACTTTGATTTTCTATAGAAACTAATTTTTATCTGAACTCTTATAAATATTGCTTAAGAGAGAGTTTCAATGTCAAAACTTCAAAACACATTTTCTTCAAAACAAATAGATTGATTTGCTCCAAATCTATTACGGATGATCATTCTATTATAGAGTGTTAGATCGTTGAATTCTATTCACTATTTCGTCCCAAATAGCGTAGGAGGATTCTAAAATGAGACGTTTGTGCTTTTGTATTGTCTTTTTCTCTTTATGGTCTTAGTTAATACTCCTGGCTGACAGGATTTATGGTCTTAGCTAATACTCCTAGCAGACGAGCTACCTCTTTCGTCATACAAAATGAAAACGTCTAATTTTTTTTTATTTCCATTCCCAAAATTAGTGATTGTATCTCTATAATTCACCAACGGGTCTTCTTTAATGGCAAATGGGTTGTGTTTGTTTGTTTACATGAGTATTCTTTGTAGCTAACCTTTTTGGATTTAACGAAACAAGGGAAAAATAAGAGGAACGATAAAATGGCTGCTGGAGGGTCTGGTTCTGGGCAGCCACAATTCCTTGTGAGGGCTGGGGATGAGAATTTTTCACATGCTCTATTGATCGAGAACCCGAAAAATGATCAGATTATTGTTCCTAATGTGAGCCTTTTAGTCTTTTTTTAATGTTTTGATGGTTAATCCTTGTGAGTTTTCAAATGATAGGATAATTATTCATTAAATTGCATTTTGAATGAGATCATGTTAGAGTTTAAGCAACTTGTGTAAGCTATGGACTATTTGGTATGGACAAAAGTGCTGAAGGAATTTTTTTGATTGATATCTACTGTTGCGTGTTATGTGCAGAAGGAAAGTTGGAAGAACTTTTTTGCATACATGGGCCCGGGATTTCTTGTTTCTATTGCATATATTGATCCTGGGAATTGTAAGATTTCTAGTTTATCTCTTTTGTACACTACTTTTTGATCAGTGGTTTGCCTCTTTTATTTCATTGTGAATGGGATTCTGAAGATTTTGTTTGGTTATTCTCAGTTGAGACCAATCTACAATCTGGTGCACAGTACAAGTATGGGGTACGTGGCCGATCCTTTAGATATAGTGCTAATAAATATGTGAATGCCATTAGTTTTGTTTTTCAAATATTTCTTTTATCTTGTAACATGTGTTTCTATTTGATTTTCTTCTAAATTTATTGTTTCCACACTGTCTTGTTTAAGAAGTTGTTATAATTTAATTTAGGTGGTGTCGAGCAGGTTGCAAATAAGCCTCTCCTCAAAACTGTATTTCAGGTATTCCCTTTAATTTGGTTGAGGGTCATGGTGTATCGTTTATAGTATTAATTTAATAAATTTTAGTTGCTGTTGTATGCAGGTCATGAGGAGATTGTTCAATCCACATAAAACAACATTAATGTTTGTCATACGTGATAAAACAAGGGTCTGTTAATATTTCCTGGGTAGTTTATATCTTGAGCTGTTGTAGAAAAACCATATGTTGCAAGCTTTTAATTTTCTAATTTTCTTTATTCCTTTTGTTATTTTTTTCGGTATGTAGATACCATTGGCAAATTTAGAGTCTGTTCTTAAAGGATGTACATAAGGTAAATTATTGGTGCTCTTAAATATTGTAATGCTCAAAAAGTGCTATTTTGTTCTTATTTGAATTCCTCCACATTTGTTATGTAATGGTTAGAGGGTAGTATTTTTGTAGATAATTGTTGACATATTTTGTCTATTATTATGATGGAAATTAGGTTGCAAATTTGAGACAGAGATTCTTCCATTCTATTGCCTTAGGAGGATTGGTTGAGGTTGGAAGAAGAAGTACAGTCCGATTCAAGCAAACTGATTGCATTTGATGTCTTTTCTCCCGGTTGTAAATCAACTGATTGCATTAATAGGTGAGCGAGGTTTCATTGGGGTTCAAATTTCAAACCAAACAAACTTAAATTGTTGGTCAAGTGTAGATCTCTTTCTTTTTTGGAAGCAAACAAGCGTAAAGATTAGATGAGGGTTTCTTTGAATTATTCTAAAGAGATAGGCTAGTTGAAAGAGCTTTCAGCTGGCCAAATAAAAGAGGGATATGTAATTATGTTAGTGTTGAAAGTCCAATTGTAAGCATTTAACTTAACTCTACCATTAACCTCATAGGTGATCCTTAGCATCAATCCTACGTTTTTGCTTACAAAAGTGTAACTTTAATTTACCGCTTACAAAAGTGTAACTTTAATTTACCCCTTACACATATATTACAAGAATCTTTCTGAATATTTGAACATATTTCTTCCTAGGTTCAATGAAAATCTTTCTTTCGATGATATTATAGATTGGTTTGCAACAACCGTACTGTATCTACCTCGAATCCTTTACTACTCAAAGGACACATTGGTAATATTTAGGATCTCATGGTGTT

mRNA sequence

TCACTTTCTTCCCTCTCTTCTTTGACAGCTGACGCCACCACCACCAGCATACATCAGTTTCTTCCATCCTTGTCGTCGTCTGTGTTCTGTCGTTGTGCTCGTCGTCGCCACCACTGTGCCCAGTCGTTGCATTTGCAAAATATTTATCGTTTGCTCCTCTCGAGCATTTAACATTTTGAAAATCTTAGCGAACAAACATAGATAGTCAAGCCTCCTTTTCGAAGATCAAATCCCATCTCCATCTTCATCACCGACTTTCGAGAAGGGAAAAATAAGAGGAACGATAAAATGGCTGCTGGAGGGTCTGGTTCTGGGCAGCCACAATTCCTTGTGAGGGCTGGGGATGAGAATTTTTCACATGCTCTATTGATCGAGAACCCGAAAAATGATCAGATTATTGTTCCTAATTTGAGACCAATCTACAATCTGGTGCACAGTACAAGTGGTGTCGAGCAGGTTGCAAATAAGCCTCTCCTCAAAACTGTATTTCAGGTCATGAGGAGATTGTTCAATCCACATAAAACAACATTAATGTTTGTCATACGTGATAAAACAAGGGAGGATTGGTTGAGGTTGGAAGAAGAAGTACAGTCCGATTCAAGCAAACTGATTGCATTTGATGTCTTTTCTCCCGGTTGTAAATCAACTGATTGCATTAATAGGTTCAATGAAAATCTTTCTTTCGATGATATTATAGATTGGTTTGCAACAACCGTACTGTATCTACCTCGAATCCTTTACTACTCAAAGGACACATTGGTAATATTTAGGATCTCATGGTGTT

Coding sequence (CDS)

ATGGCTGCTGGAGGGTCTGGTTCTGGGCAGCCACAATTCCTTGTGAGGGCTGGGGATGAGAATTTTTCACATGCTCTATTGATCGAGAACCCGAAAAATGATCAGATTATTGTTCCTAATTTGAGACCAATCTACAATCTGGTGCACAGTACAAGTGGTGTCGAGCAGGTTGCAAATAAGCCTCTCCTCAAAACTGTATTTCAGGTCATGAGGAGATTGTTCAATCCACATAAAACAACATTAATGTTTGTCATACGTGATAAAACAAGGGAGGATTGGTTGAGGTTGGAAGAAGAAGTACAGTCCGATTCAAGCAAACTGATTGCATTTGATGTCTTTTCTCCCGGTTGTAAATCAACTGATTGCATTAATAGGTTCAATGAAAATCTTTCTTTCGATGATATTATAGATTGGTTTGCAACAACCGTACTGTATCTACCTCGAATCCTTTACTACTCAAAGGACACATTGGTAATATTTAGGATCTCATGGTGT

Protein sequence

MAAGGSGSGQPQFLVRAGDENFSHALLIENPKNDQIIVPNLRPIYNLVHSTSGVEQVANKPLLKTVFQVMRRLFNPHKTTLMFVIRDKTREDWLRLEEEVQSDSSKLIAFDVFSPGCKSTDCINRFNENLSFDDIIDWFATTVLYLPRILYYSKDTLVIFRISWC

Homology

[Close]

BLAST of MELO3C028766 vs. NCBI nr
Match: TYK30626.1 (metal transporter Nramp1-like [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 6.1e-21
Identity = 72/144 (50.00%), Postives = 79/144 (54.86%), Query Frame = 0


Query: 1   MAAGGSGSGQPQFLVRAGDENFSHALLIENPKNDQIIVPN----------LRPIY----- 60
           MAAGGSGS QPQFLVR GDENFSHA LIENP+ DQIIVP+          + P++     
Sbjct: 1   MAAGGSGSRQPQFLVRVGDENFSHAPLIENPETDQIIVPDKESWKNFFAYMSPVFLVSIA 60

Query: 61  ---------NLVHSTS-------------------------GVEQVANKPLLKTVFQVMR 96
                    +L  S                           G EQ ANKP LKTVFQVM 
Sbjct: 61  YIDPGNFEIDLQSSAQYKYGDDTAFEKQSTLFALVVWCHDIGREQAANKPFLKTVFQVMM 120

[Close]

BLAST of MELO3C028766 vs. NCBI nr
Match: XP_004138176.1 (uncharacterized protein LOC101203381 [Cucumis sativus] >KGN63685.1 hypothetical protein Csa_013795 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 5.0e-15
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 107 LIAFDVFSPGCKSTDCINRFNENLSFDDIIDWFATTVLYLPRILYYSKDTL 158
           L +F  FSPGCKSTDCINRFN  LSFDDI DWFAT++LYLPRILYYSK+TL
Sbjct: 229 LPSFVAFSPGCKSTDCINRFNGKLSFDDITDWFATSILYLPRILYYSKETL 279

[Close]

BLAST of MELO3C028766 vs. NCBI nr
Match: KAA0057654.1 (metal transporter Nramp1-like [Cucumis melo var. makuwa] >TYK19536.1 metal transporter Nramp1-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-14
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   MAAGGSGSGQPQFLVRAGDENFSHALLIENPKNDQIIVPNLRPIYNLVHSTS 53
           MAAGGSGS QPQFLVRAGDENFSHA LIENP+ DQIIVP+ R IYNLVHSTS
Sbjct: 154 MAAGGSGSRQPQFLVRAGDENFSHAPLIENPETDQIIVPDSRLIYNLVHSTS 205

[Close]

BLAST of MELO3C028766 vs. NCBI nr
Match: KAA0057956.1 (dnaJ-like protein subfamily C member 16 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 5.5e-14
Identity = 41/51 (80.39%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 107 LIAFDVFSPGCKSTDCINRFNENLSFDDIIDWFATTVLYLPRILYYSKDTL 158
           L +F  FSP CKS DCINRFN  LSFDDI DWFATTVLYLPRILYYSKD L
Sbjct: 219 LPSFVAFSPSCKSIDCINRFNGKLSFDDITDWFATTVLYLPRILYYSKDML 269

[Close]

BLAST of MELO3C028766 vs. NCBI nr
Match: XP_008453219.1 (PREDICTED: dnaJ homolog subfamily C member 16 [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 5.5e-14
Identity = 41/51 (80.39%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 107 LIAFDVFSPGCKSTDCINRFNENLSFDDIIDWFATTVLYLPRILYYSKDTL 158
           L +F  FSP CKS DCINRFN  LSFDDI DWFATTVLYLPRILYYSKD L
Sbjct: 229 LPSFVAFSPSCKSIDCINRFNGKLSFDDITDWFATTVLYLPRILYYSKDML 279

[Close]

BLAST of MELO3C028766 vs. ExPASy Swiss-Prot
Match: P93042 (Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RHD3 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-11
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 53  GVEQVANKPLLKTVFQVMRRLFNPHKTTLMFVIRDKTREDWLRLEEEVQSDSSKL 108
           G EQ ANKPLLKTVFQVM RLF+P KTTLMFVIRDKTR     LE  ++ D  K+
Sbjct: 135 GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 189

[Close]

BLAST of MELO3C028766 vs. ExPASy Swiss-Prot
Match: Q2QMH2 (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0604600 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-11
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 53  GVEQVANKPLLKTVFQVMRRLFNPHKTTLMFVIRDKTREDWLRLEEEVQSDSSKL 108
           G EQ ANKPLLKTVFQVM RLF+P KTTL+FVIRDKTR     LE  ++ D  K+
Sbjct: 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLEHLEPVLREDIQKI 192

[Close]

BLAST of MELO3C028766 vs. ExPASy Swiss-Prot
Match: Q9SSN0 (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g72960 PE=2 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 4.6e-11
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 53  GVEQVANKPLLKTVFQVMRRLFNPHKTTLMFVIRDKTREDWLRLEEEVQSDSSKL 108
           G EQ ANKPLLKTVFQVM RLF+P KTT++FVIRDKTR     LE  ++ D  K+
Sbjct: 140 GREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTRTPLENLEPVLREDIQKI 194

[Close]

BLAST of MELO3C028766 vs. ExPASy Swiss-Prot
Match: Q9FKE9 (Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g45160 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-10
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 53  GVEQVANKPLLKTVFQVMRRLFNPHKTTLMFVIRDKTREDWLRLEEEVQSDSSKL 108
           G EQ ANKPLLKTVFQVM RLF+P KTTL+FVIRDKT+     LE  ++ D  K+
Sbjct: 138 GREQAANKPLLKTVFQVMLRLFSPRKTTLLFVIRDKTKTPIELLERALREDIQKI 192

[Close]

BLAST of MELO3C028766 vs. ExPASy Swiss-Prot
Match: Q0JLS6 (Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RHD3 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-10
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 53  GVEQVANKPLLKTVFQVMRRLFNPHKTTLMFVIRDKTREDWLRLEEEVQSDSSKL 108
           G EQ ANKPLLKTVFQVM RLF+P KTTL+FVIRDK++     LE  ++ D  K+
Sbjct: 135 GREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKSKTPLENLEPILREDIQKI 189

[Close]

BLAST of MELO3C028766 vs. ExPASy TrEMBL
Match: A0A5D3E410 (Metal transporter Nramp1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00430 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.0e-21
Identity = 72/144 (50.00%), Postives = 79/144 (54.86%), Query Frame = 0


Query: 1   MAAGGSGSGQPQFLVRAGDENFSHALLIENPKNDQIIVPN----------LRPIY----- 60
           MAAGGSGS QPQFLVR GDENFSHA LIENP+ DQIIVP+          + P++     
Sbjct: 1   MAAGGSGSRQPQFLVRVGDENFSHAPLIENPETDQIIVPDKESWKNFFAYMSPVFLVSIA 60

Query: 61  ---------NLVHSTS-------------------------GVEQVANKPLLKTVFQVMR 96
                    +L  S                           G EQ ANKP LKTVFQVM 
Sbjct: 61  YIDPGNFEIDLQSSAQYKYGDDTAFEKQSTLFALVVWCHDIGREQAANKPFLKTVFQVMM 120

[Close]

BLAST of MELO3C028766 vs. ExPASy TrEMBL
Match: A0A0A0LP59 (J domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G009890 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.4e-15
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 107 LIAFDVFSPGCKSTDCINRFNENLSFDDIIDWFATTVLYLPRILYYSKDTL 158
           L +F  FSPGCKSTDCINRFN  LSFDDI DWFAT++LYLPRILYYSK+TL
Sbjct: 229 LPSFVAFSPGCKSTDCINRFNGKLSFDDITDWFATSILYLPRILYYSKETL 279

[Close]

BLAST of MELO3C028766 vs. ExPASy TrEMBL
Match: A0A5A7URA9 (Metal transporter Nramp1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00300 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.1e-15
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   MAAGGSGSGQPQFLVRAGDENFSHALLIENPKNDQIIVPNLRPIYNLVHSTS 53
           MAAGGSGS QPQFLVRAGDENFSHA LIENP+ DQIIVP+ R IYNLVHSTS
Sbjct: 154 MAAGGSGSRQPQFLVRAGDENFSHAPLIENPETDQIIVPDSRLIYNLVHSTS 205

[Close]

BLAST of MELO3C028766 vs. ExPASy TrEMBL
Match: A0A5A7UUX0 (DnaJ-like protein subfamily C member 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002590 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.7e-14
Identity = 41/51 (80.39%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 107 LIAFDVFSPGCKSTDCINRFNENLSFDDIIDWFATTVLYLPRILYYSKDTL 158
           L +F  FSP CKS DCINRFN  LSFDDI DWFATTVLYLPRILYYSKD L
Sbjct: 219 LPSFVAFSPSCKSIDCINRFNGKLSFDDITDWFATTVLYLPRILYYSKDML 269

[Close]

BLAST of MELO3C028766 vs. ExPASy TrEMBL
Match: A0A1S3BWH5 (dnaJ homolog subfamily C member 16 OS=Cucumis melo OX=3656 GN=LOC103494006 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.7e-14
Identity = 41/51 (80.39%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 107 LIAFDVFSPGCKSTDCINRFNENLSFDDIIDWFATTVLYLPRILYYSKDTL 158
           L +F  FSP CKS DCINRFN  LSFDDI DWFATTVLYLPRILYYSKD L
Sbjct: 229 LPSFVAFSPSCKSIDCINRFNGKLSFDDITDWFATTVLYLPRILYYSKDML 279

[Close]

BLAST of MELO3C028766 vs. TAIR 10
Match: AT3G13870.2 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 71.2 bits (173), Expect = 8.5e-13
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 53  GVEQVANKPLLKTVFQVMRRLFNPHKTTLMFVIRDKTREDWLRLEEEVQSDSSKL 108
           G EQ ANKPLLKTVFQVM RLF+P KTTLMFVIRDKTR     LE  ++ D  K+
Sbjct: 71  GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 125

[Close]

BLAST of MELO3C028766 vs. TAIR 10
Match: AT3G13870.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 71.2 bits (173), Expect = 8.5e-13
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 53  GVEQVANKPLLKTVFQVMRRLFNPHKTTLMFVIRDKTREDWLRLEEEVQSDSSKL 108
           G EQ ANKPLLKTVFQVM RLF+P KTTLMFVIRDKTR     LE  ++ D  K+
Sbjct: 135 GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 189

[Close]

BLAST of MELO3C028766 vs. TAIR 10
Match: AT1G72960.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 69.3 bits (168), Expect = 3.2e-12
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 53  GVEQVANKPLLKTVFQVMRRLFNPHKTTLMFVIRDKTREDWLRLEEEVQSDSSKL 108
           G EQ ANKPLLKTVFQVM RLF+P KTT++FVIRDKTR     LE  ++ D  K+
Sbjct: 140 GREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTRTPLENLEPVLREDIQKI 194

[Close]

BLAST of MELO3C028766 vs. TAIR 10
Match: AT5G45160.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 68.2 bits (165), Expect = 7.2e-12
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 53  GVEQVANKPLLKTVFQVMRRLFNPHKTTLMFVIRDKTREDWLRLEEEVQSDSSKL 108
           G EQ ANKPLLKTVFQVM RLF+P KTTL+FVIRDKT+     LE  ++ D  K+
Sbjct: 138 GREQAANKPLLKTVFQVMLRLFSPRKTTLLFVIRDKTKTPIELLERALREDIQKI 192

[Close]

BLAST of MELO3C028766 vs. TAIR 10
Match: AT1G18700.1 (DNAJ heat shock N-terminal domain-containing protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-10
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 113 FSPGCKSTDCINRFNENLSFDDIIDWFATTVLYLPRILYYSKDTLV 159
           F P CK+ DC+ RF   LS D I DWFATTVL LPR+ Y++K+TLV
Sbjct: 230 FPPNCKTADCLIRFEGELSADAITDWFATTVLGLPRVFYHTKETLV 275

The following BLAST results are available for this feature:

BLAST of MELO3C028766 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK30626.1	6.1e-21	50.00	metal transporter Nramp1-like [Cucumis melo var. makuwa]	[more]
XP_004138176.1	5.0e-15	80.39	uncharacterized protein LOC101203381 [Cucumis sativus] >KGN63685.1 hypothetical ...	[more]
KAA0057654.1	1.5e-14	86.54	metal transporter Nramp1-like [Cucumis melo var. makuwa] >TYK19536.1 metal trans...	[more]
KAA0057956.1	5.5e-14	80.39	dnaJ-like protein subfamily C member 16 [Cucumis melo var. makuwa]	[more]
XP_008453219.1	5.5e-14	80.39	PREDICTED: dnaJ homolog subfamily C member 16 [Cucumis melo]	[more]

BLAST of MELO3C028766 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93042	1.2e-11	67.27	Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RHD3 PE=1 SV=1	[more]
Q2QMH2	2.7e-11	65.45	Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q9SSN0	4.6e-11	63.64	Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g7...	[more]
Q9FKE9	1.0e-10	63.64	Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g4...	[more]
Q0JLS6	2.3e-10	61.82	Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RHD3 P...	[more]

BLAST of MELO3C028766 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E410	3.0e-21	50.00	Metal transporter Nramp1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A0A0LP59	2.4e-15	80.39	J domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G009890 PE=4 SV=1	[more]
A0A5A7URA9	7.1e-15	86.54	Metal transporter Nramp1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7UUX0	2.7e-14	80.39	DnaJ-like protein subfamily C member 16 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BWH5	2.7e-14	80.39	dnaJ homolog subfamily C member 16 OS=Cucumis melo OX=3656 GN=LOC103494006 PE=4 ...	[more]

BLAST of MELO3C028766 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13870.2	8.5e-13	67.27	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT3G13870.1	8.5e-13	67.27	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT1G72960.1	3.2e-12	63.64	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT5G45160.1	7.2e-12	63.64	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT1G18700.1	1.0e-10	60.87	DNAJ heat shock N-terminal domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008803	RHD3/Sey1	PFAM	PF05879	RHD3	coord: 46..107 e-value: 9.5E-15 score: 53.8
IPR008803	RHD3/Sey1	PANTHER	PTHR45923	PROTEIN SEY1	coord: 46..107
None	No IPR available	PANTHER	PTHR45923:SF14	RHD3/SEY1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED	coord: 46..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028766.1	MELO3C028766.1	mRNA