MELO3C028684 (gene) Melon (DHL92) v4

Overview
NameMELO3C028684
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionATP-dependent RNA helicase MAK5
Locationchr01: 4088276 .. 4088791 (+)
RNA-Seq ExpressionMELO3C028684
SyntenyMELO3C028684
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTAGTGATCTCAGCTTCTTTACTCTCAGCAATGGTGTTTTACTCTTCTCTACTCCCTTTTCTCCATTCTTTAAACCTTTACATCTCTTCAACAATCCACAAGAACTACATGTTCTTGCTCTGCAATGGCCTCCTTGTCTTCATCGTTCGAAATTCCGGTCTTATCGGCAACACCTGCAACGAACAGAGCAGCAGAAATGAAGCTTTAGGGGCTGTAACAATGGCTGATGGGAACAGAAAAATTGAGAGCAAAGTTGAAGTTGAAGTTGAAGAAGAAAGGAGAAATGGGTTGGTTGTAAATGAAGAAAAGTTTGAAAATTTGATCACAGATAATGAAGATGAAGAAGAAAGATTCATTTCTTATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAATTGATGAAGAATTGAATAAGAAATGTGAAGAGTTTATTAGAAAAATGAAGGCAGGAATTAAGTTTGAATCACAGCAATTGTTTATATTGTAA

mRNA sequence

ATGAAGTTAGTGATCTCAGCTTCTTTACTCTCAGCAATGGTGTTTTACTCTTCTCTACTCCCTTTTCTCCATTCTTTAAACCTTTACATCTCTTCAACAATCCACAAGAACTACATGTTCTTGCTCTGCAATGGCCTCCTTGTCTTCATCGTTCGAAATTCCGGTCTTATCGGCAACACCTGCAACGAACAGAGCAGCAGAAATGAAGCTTTAGGGGCTGTAACAATGGCTGATGGGAACAGAAAAATTGAGAGCAAAGTTGAAGTTGAAGTTGAAGAAGAAAGGAGAAATGGGTTGGTTGTAAATGAAGAAAAGTTTGAAAATTTGATCACAGATAATGAAGATGAAGAAGAAAGATTCATTTCTTATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAATTGATGAAGAATTGAATAAGAAATGTGAAGAGTTTATTAGAAAAATGAAGGCAGGAATTAAGTTTGAATCACAGCAATTGTTTATATTGTAA

Coding sequence (CDS)

ATGAAGTTAGTGATCTCAGCTTCTTTACTCTCAGCAATGGTGTTTTACTCTTCTCTACTCCCTTTTCTCCATTCTTTAAACCTTTACATCTCTTCAACAATCCACAAGAACTACATGTTCTTGCTCTGCAATGGCCTCCTTGTCTTCATCGTTCGAAATTCCGGTCTTATCGGCAACACCTGCAACGAACAGAGCAGCAGAAATGAAGCTTTAGGGGCTGTAACAATGGCTGATGGGAACAGAAAAATTGAGAGCAAAGTTGAAGTTGAAGTTGAAGAAGAAAGGAGAAATGGGTTGGTTGTAAATGAAGAAAAGTTTGAAAATTTGATCACAGATAATGAAGATGAAGAAGAAAGATTCATTTCTTATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAATTGATGAAGAATTGAATAAGAAATGTGAAGAGTTTATTAGAAAAATGAAGGCAGGAATTAAGTTTGAATCACAGCAATTGTTTATATTGTAA

Protein sequence

MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNTCNEQSSRNEALGAVTMADGNRKIESKVEVEVEEERRNGLVVNEEKFENLITDNEDEEERFISYEEEEEEEEEEEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL
Homology
BLAST of MELO3C028684 vs. NCBI nr
Match: XP_008462077.2 (PREDICTED: gem-associated protein 2-like [Cucumis melo])

HSP 1 Score: 274.2 bits (700), Expect = 7.4e-70
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0

Query: 13  MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNTCNEQSSRNEALG 72
           MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNTCNEQSSRNEALG
Sbjct: 1   MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNTCNEQSSRNEALG 60

Query: 73  AVTMADGNRKIESKVEVEVEEERRNGLVVNEEKFENLITDNEDEEERFISYEEEEEEEEE 132
           AVTMADGNRKIESKVEVEVEEERRNGLVVNEEKFENLITDNEDEEERFISYEEEEEEEEE
Sbjct: 61  AVTMADGNRKIESKVEVEVEEERRNGLVVNEEKFENLITDNEDEEERFISYEEEEEEEEE 120

Query: 133 EEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 172
           EEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL
Sbjct: 121 EEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 159

BLAST of MELO3C028684 vs. NCBI nr
Match: XP_011658666.2 (glutamic acid-rich protein [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 2.5e-62
Identity = 156/178 (87.64%), Postives = 162/178 (91.01%), Query Frame = 0

Query: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT 60
           MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT
Sbjct: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT 60

Query: 61  CNEQSSRNEALGAVTMADGNRKIESKVEVEVEEERRNGLVVNEEKFENLITDNEDEEERF 120
            +E+SS NEALGA TMADGNRKIESK  VE+EEER NGLVVNE+K ENLITDNE EEERF
Sbjct: 61  SDERSSGNEALGAATMADGNRKIESK--VEIEEERGNGLVVNEDKIENLITDNEVEEERF 120

Query: 121 ISYEE-------EEEEEEEEEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 172
           +SYEE       EEEEEEE +EEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL
Sbjct: 121 MSYEEEEEEEIDEEEEEEEIDEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 176

BLAST of MELO3C028684 vs. NCBI nr
Match: XP_038888415.1 (histone H3.v1-like [Benincasa hispida])

HSP 1 Score: 225.3 bits (573), Expect = 3.9e-55
Identity = 139/171 (81.29%), Postives = 148/171 (86.55%), Query Frame = 0

Query: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT 60
           MKLVISASLLSAMVFYSSLLPFLHSLNLYIS+TIHKNYMFLLCNGLLVFIVRNSGLIGN+
Sbjct: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISTTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60

Query: 61  CNEQSSRNEALGAVTMADGNRKIESKVEVEVEEERRNGLVVNEEKFENLITDNEDEEERF 120
            +EQS RNEALGA  MADGNRKIESK  VE+EEER NGL+  EE+ E LIT +EDEEERF
Sbjct: 61  SDEQSGRNEALGA-AMADGNRKIESK--VEIEEERENGLIAKEEENEELITKDEDEEERF 120

Query: 121 ISYEEEEEEEEEEEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 172
             Y        EEEEEEEEEEIDEELNKKCEEFIRKMK GIKFESQQ+F+L
Sbjct: 121 NFY--------EEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVFVL 160

BLAST of MELO3C028684 vs. NCBI nr
Match: KAG6572225.1 (hypothetical protein SDJN03_28953, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.8 bits (390), Expect = 6.5e-34
Identity = 115/181 (63.54%), Postives = 131/181 (72.38%), Query Frame = 0

Query: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT 60
           MKLVISAS+LSAMVFYSSLLPFLHSLNLYIS+TIHKNYMFLLCNGLLVFIVRNSGLI ++
Sbjct: 1   MKLVISASVLSAMVFYSSLLPFLHSLNLYISATIHKNYMFLLCNGLLVFIVRNSGLISSS 60

Query: 61  ----CNEQSSRNEALGAVTMADGNRKIESKVEVEVEEERRNGLVVNE--EKFENLITDNE 120
               C    SR        M D    IE K  VE  EER NG +  E  E+ E L+T+ E
Sbjct: 61  GREQCGGHGSREAESPGAAMEDSTTIIERK--VEDGEERENGFIAEEEQEESERLVTEEE 120

Query: 121 DEEERFISYEEEEEEEEEEEEEEEEEEI----DEELNKKCEEFIRKMKAGIKFESQQLFI 172
            ++E     +EE+EEEEEEEEEEE EE+    +EEL+KK EEFIRKMKAGIK ESQQ+ I
Sbjct: 121 QQQEH--EEQEEQEEEEEEEEEEEAEEVGALSNEELDKKFEEFIRKMKAGIKLESQQVLI 177

BLAST of MELO3C028684 vs. NCBI nr
Match: KAG7011863.1 (hypothetical protein SDJN02_26769, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.7 bits (374), Expect = 4.7e-32
Identity = 112/178 (62.92%), Postives = 129/178 (72.47%), Query Frame = 0

Query: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT 60
           MKLVISAS+LSAMVFYSSLLPFLHSLNLYIS+TIHKNYMFLLCNGLLVFIVRNSGLI ++
Sbjct: 1   MKLVISASVLSAMVFYSSLLPFLHSLNLYISATIHKNYMFLLCNGLLVFIVRNSGLISSS 60

Query: 61  ----CNEQSSRNEALGAVTMADGNRKIESKVEVEVEEERRNGLVVNE--EKFENLITDNE 120
               C    SR        M D    IE K  VE  EER NG +  E  E+ E L+T+ E
Sbjct: 61  GREQCGGHGSREAESPGAAMEDSTTIIERK--VEDGEERENGFIAEEEQEESERLVTEEE 120

Query: 121 DEEERFISYEEEEEEEEEEEEEEEEEEI-DEELNKKCEEFIRKMKAGIKFESQQLFIL 172
            ++E    +EE+EE+EEEEEE EE   + +EEL+KK EEFIRKMKAGIK ESQQ+ IL
Sbjct: 121 QQQE----HEEQEEQEEEEEEAEEVGALSNEELDKKFEEFIRKMKAGIKLESQQVLIL 172

BLAST of MELO3C028684 vs. ExPASy TrEMBL
Match: A0A1S3CG16 (gem-associated protein 2-like OS=Cucumis melo OX=3656 GN=LOC103500515 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.6e-70
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0

Query: 13  MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNTCNEQSSRNEALG 72
           MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNTCNEQSSRNEALG
Sbjct: 1   MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNTCNEQSSRNEALG 60

Query: 73  AVTMADGNRKIESKVEVEVEEERRNGLVVNEEKFENLITDNEDEEERFISYEEEEEEEEE 132
           AVTMADGNRKIESKVEVEVEEERRNGLVVNEEKFENLITDNEDEEERFISYEEEEEEEEE
Sbjct: 61  AVTMADGNRKIESKVEVEVEEERRNGLVVNEEKFENLITDNEDEEERFISYEEEEEEEEE 120

Query: 133 EEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 172
           EEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL
Sbjct: 121 EEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 159

BLAST of MELO3C028684 vs. ExPASy TrEMBL
Match: A0A0A0K349 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G032240 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 3.0e-61
Identity = 147/171 (85.96%), Postives = 152/171 (88.89%), Query Frame = 0

Query: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT 60
           MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT
Sbjct: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT 60

Query: 61  CNEQSSRNEALGAVTMADGNRKIESKVEVEVEEERRNGLVVNEEKFENLITDNEDEEERF 120
            +E+SS NEALGA TMADGNRKIESK  VE+EEER NGLVVNE+K ENLITDNE EEERF
Sbjct: 61  SDERSSGNEALGAATMADGNRKIESK--VEIEEERGNGLVVNEDKIENLITDNEVEEERF 120

Query: 121 ISYEEEEEEEEEEEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 172
           +SY           EEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL
Sbjct: 121 MSY-----------EEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 158

BLAST of MELO3C028684 vs. ExPASy TrEMBL
Match: A0A6J1C4P4 (ATP-dependent RNA helicase MAK5 OS=Momordica charantia OX=3673 GN=LOC111007892 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.9e-32
Identity = 107/170 (62.94%), Postives = 121/170 (71.18%), Query Frame = 0

Query: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT 60
           MK++ISASLLSAMV YSSLLPFLHSLNLYIS+TIHKNY+FLLCNGLLVFIVRNSGLIG +
Sbjct: 1   MKILISASLLSAMVLYSSLLPFLHSLNLYISATIHKNYIFLLCNGLLVFIVRNSGLIGGS 60

Query: 61  CNEQSSRNEALGAVTMADGNRKIESKVEVEVEEERRNGLVVNEEKFENLITDNEDEEERF 120
             EQ              G  K+ESK  VE  EER NGLV  +E+ E LIT         
Sbjct: 61  GEEQG-------------GGGKVESK--VEDGEERENGLVAEQEESEKLIT--------- 120

Query: 121 ISYEEEEEEEEEEEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFI 171
              E+EE EEEEEEEEE+    +EELN+KCEEFIRKMKA IKFE QQ+ +
Sbjct: 121 ---EDEEHEEEEEEEEEDGGLSNEELNQKCEEFIRKMKAEIKFELQQVLV 143

BLAST of MELO3C028684 vs. ExPASy TrEMBL
Match: A0A6J1I0H9 (sodium/potassium/calcium exchanger 1-like OS=Cucurbita maxima OX=3661 GN=LOC111468328 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 114/177 (64.41%), Postives = 129/177 (72.88%), Query Frame = 0

Query: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT 60
           MKLVISAS+LSAMVFYSSLLPFLHSLNLYIS+TIHKNYMFLLCNGLLVFIVRNSGLI ++
Sbjct: 1   MKLVISASVLSAMVFYSSLLPFLHSLNLYISATIHKNYMFLLCNGLLVFIVRNSGLISSS 60

Query: 61  CNEQ-----SSRNEALGAVTMADGNRKIESKVEVEVEEERRNGLVVNEE-KFENLITDNE 120
             EQ     S   EALGA  M D    IE K  VE  EER NG +  EE + E L+T+ E
Sbjct: 61  GREQCGGHGSREAEALGA-AMEDSTTIIERK--VEDGEERENGFIAEEEQESERLVTEEE 120

Query: 121 DEEERFISYEEEEEEEEEEEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 172
            ++E      EEE+EEE+ E EE     +EEL+KK EEFIRKMKAGIK ESQQ+ IL
Sbjct: 121 QQQE-----HEEEQEEEKAEAEEVGALSNEELDKKFEEFIRKMKAGIKLESQQVLIL 169

BLAST of MELO3C028684 vs. ExPASy TrEMBL
Match: A0A6J1EJY9 (uncharacterized protein LOC111435260 OS=Cucurbita moschata OX=3662 GN=LOC111435260 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.5e-31
Identity = 105/174 (60.34%), Postives = 123/174 (70.69%), Query Frame = 0

Query: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLI--- 60
           MKL+ISASLLSAMVFYSSLLPFLHS NLYIS+T HKNYMFLLCNGLLVFIVRNSGLI   
Sbjct: 1   MKLLISASLLSAMVFYSSLLPFLHSFNLYISATAHKNYMFLLCNGLLVFIVRNSGLISCS 60

Query: 61  GNTCNEQSSRNEALGAVTMADGNRKIESKVEVEVEEERRNGLVVNEEKFENLITDNEDEE 120
           G+  +   SR       +MADG+ KIESK  VE  EER NGL+  +E+ E  I       
Sbjct: 61  GDRHSGGDSRGAEALEASMADGSSKIESK--VEDREERGNGLIQKDEESERSIV------ 120

Query: 121 ERFISYEEEEEEEEEEEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 172
                  E+++ +++++EEE      EELNKKCEEFIRKMKAGIK ESQQL +L
Sbjct: 121 -------EDDDNDDDDDEEEVGALSKEELNKKCEEFIRKMKAGIKLESQQLLVL 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008462077.27.4e-70100.00PREDICTED: gem-associated protein 2-like [Cucumis melo][more]
XP_011658666.22.5e-6287.64glutamic acid-rich protein [Cucumis sativus][more]
XP_038888415.13.9e-5581.29histone H3.v1-like [Benincasa hispida][more]
KAG6572225.16.5e-3463.54hypothetical protein SDJN03_28953, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011863.14.7e-3262.92hypothetical protein SDJN02_26769, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3CG163.6e-70100.00gem-associated protein 2-like OS=Cucumis melo OX=3656 GN=LOC103500515 PE=4 SV=1[more]
A0A0A0K3493.0e-6185.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G032240 PE=4 SV=1[more]
A0A6J1C4P43.9e-3262.94ATP-dependent RNA helicase MAK5 OS=Momordica charantia OX=3673 GN=LOC111007892 P... [more]
A0A6J1I0H91.1e-3164.41sodium/potassium/calcium exchanger 1-like OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1EJY91.5e-3160.34uncharacterized protein LOC111435260 OS=Cucurbita moschata OX=3662 GN=LOC1114352... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 106..152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..146
NoneNo IPR availablePANTHERPTHR34947TRANSMEMBRANE PROTEINcoord: 1..169
NoneNo IPR availablePANTHERPTHR34947:SF3TRANSMEMBRANE PROTEINcoord: 1..169

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028684.1MELO3C028684.1mRNA