MELO3C028681.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C028681.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr01: 12243228 .. 12243882 (+)
RNA-Seq Expression	MELO3C028681.jh1
Synteny	MELO3C028681.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTTGGACGAGCTTTAGAGGACTCCCATTGACAACCTGGAATATGAGCTCCTACAAACAGATTGGGGATGCATGTGGAGGGTTAATAGAAGTCTCAAAATCAAAAATGAGAAAGATAGACCTTATTGAAGTTAGACTGAAGATCAGATACAAGTATACATGGTTCATTCCAACTCAGGTTAACATCACAGACAGCAAAGGTAACATTTTCATGGTCCAAACTATTTCTTACCCAGAAGGAAGATGGTTCAAAGAAAGAAATGCAAACATACATGGTTCTTTTACAAGACAAGTTGTCCTAGAATTCAATGAATTTGATTTCGAGGCTGAAAAATACTCTTTCATGGGATTTGTTGCTACACCGCTGGAGAAAAGAGAAAAAAAGCCGAAGAAAGCTCATAAGAACAGCCAAAATAGTAACGAACGTCCGACAATTTCAAACTCACCAGACTCAACCTTCTAGGCCATCATAATCTCTGACAACTCTGATGGTGGTAGGGGCAGTGATGGAAGACTCAAATCTGTCATTTCGGGTAAGATGGCCAAAGGGAAGGGCATTATAGTCTTTAACGATAACCAAGAAAAGAAGGCAAAATTTCCAAAGAGGAAAGTCAGCTTCCCCTCTCCAAAAAACAAAACATTCTTCTACAA

mRNA sequence

ATGGAGGTTGGACGAGCTTTAGAGGACTCCCATTGACAACCTGGAATATGAGCTCCTACAAACAGATTGGGGATGCATGTGGAGGGTTAATAGAAGTCTCAAAATCAAAAATGAGAAAGATAGACCTTATTGAAGTTAGACTGAAGATCAGATACAAGTATACATGGTTCATTCCAACTCAGGTTAACATCACAGACAGCAAAGGTAACATTTTCATGGTCCAAACTATTTCTTACCCAGAAGGAAGATGGTTCAAAGAAAGAAATGCAAACATACATGGTTCTTTTACAAGACAAGTTGTCCTAGAATTCAATGAATTTGATTTCGAGGCTGAAAAATACTCTTTCATGGGATTTGTTGCTACACCGCTGGAGAAAAGAGAAAAAAAGCCGAAGAAAGCTCATAAGAACAGCCAAAATAGTAACGAACGTCCGACAATTTCAAACTCACCAGACTCAACCTTCTAGGCCATCATAATCTCTGACAACTCTGATGGTGGTAGGGGCAGTGATGGAAGACTCAAATCTGTCATTTCGGGTAAGATGGCCAAAGGGAAGGGCATTATAGTCTTTAACGATAACCAAGAAAAGAAGGCAAAATTTCCAAAGAGGAAAGTCAGCTTCCCCTCTCCAAAAAACAAAACATTCTTCTACAA

Coding sequence (CDS)

ATGAGCTCCTACAAACAGATTGGGGATGCATGTGGAGGGTTAATAGAAGTCTCAAAATCAAAAATGAGAAAGATAGACCTTATTGAAGTTAGACTGAAGATCAGATACAAGTATACATGGTTCATTCCAACTCAGGTTAACATCACAGACAGCAAAGGTAACATTTTCATGGTCCAAACTATTTCTTACCCAGAAGGAAGATGGTTCAAAGAAAGAAATGCAAACATACATGGTTCTTTTACAAGACAAGTTGTCCTAGAATTCAATGAATTTGATTTCGAGGCTGAAAAATACTCTTTCATGGGATTTGTTGCTACACCGCTGGAGAAAAGAGAAAAAAAGCCGAAGAAAGCTCATAAGAACAGCCAAAATAGTAACGAACGTCCGACAATTTCAAACTCACCAGACTCAACCTTCTAG

Protein sequence

MSSYKQIGDACGGLIEVSKSKMRKIDLIEVRLKIRYKYTWFIPTQVNITDSKGNIFMVQTISYPEGRWFKERNANIHGSFTRQVVLEFNEFDFEAEKYSFMGFVATPLEKREKKPKKAHKNSQNSNERPTISNSPDSTF

Homology

[Close]

BLAST of MELO3C028681.jh1 vs. NCBI nr
Match: KAA0040709.1 (hypothetical protein E6C27_scaffold529G00290 [Cucumis melo var. makuwa] >TYK14278.1 hypothetical protein E5676_scaffold4170G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 211 bits (536), Expect = 1.48e-64
Identity = 107/138 (77.54%), Postives = 118/138 (85.51%), Query Frame = 0


Query: 1   MSSYKQIGDACGGLIEVSKSKMRKIDLIEVRLKIRYKYTWFIPTQVNITDSKGNIFMVQT 60
           MS+YKQIGDACGGL+EVSKS MRK  LIEVRLKIR+ YT  I  Q+NITD+K NIF VQT
Sbjct: 67  MSTYKQIGDACGGLVEVSKSTMRKTYLIEVRLKIRHNYTRLILAQINITDNKNNIFTVQT 126

Query: 61  ISYPEGRWFKERNANIHGSFTRQVVLEFNEFDFEAEKYSFMGFVATPLEKREKKPKKAHK 120
           ISY EGRWFKERNANIHGSFTRQ  L+FNEFDFEA++YSFM F ATP +K EKKPKK  K
Sbjct: 127 ISYTEGRWFKERNANIHGSFTRQAALKFNEFDFEAKQYSFMRFTATPPKKEEKKPKKTQK 186

Query: 121 NSQNSNERPTISNSPDST 138
           NS+NSNERP+ISNS DST
Sbjct: 187 NSRNSNERPSISNSLDST 204

[Close]

BLAST of MELO3C028681.jh1 vs. NCBI nr
Match: KAA0047508.1 (putative amidohydrolase ytcJ [Cucumis melo var. makuwa] >TYK26480.1 putative amidohydrolase ytcJ [Cucumis melo var. makuwa])

HSP 1 Score: 189 bits (480), Expect = 5.00e-59
Identity = 91/120 (75.83%), Postives = 102/120 (85.00%), Query Frame = 0


Query: 1   MSSYKQIGDACGGLIEVSKSKMRKIDLIEVRLKIRYKYTWFIPTQVNITDSKGNIFMVQT 60
           M+SY+QIGDACGGL+EVSKS MRK DLIEVRLKIR+ YT FIP Q+NI DSKGNIF +QT
Sbjct: 21  MNSYRQIGDACGGLVEVSKSTMRKTDLIEVRLKIRHNYTGFIPAQINIKDSKGNIFTIQT 80

Query: 61  ISYPEGRWFKERNANIHGSFTRQVVLEFNEFDFEAEKYSFMGFVATPLEKREKKPKKAHK 120
           +S+ E RWFKERNANIH  FTRQ  LEFNEFDFEAEKYSFMGFV TP +K++KK KK  K
Sbjct: 81  VSFTEERWFKERNANIHSYFTRQAALEFNEFDFEAEKYSFMGFVVTPPKKKDKKLKKTLK 140

[Close]

BLAST of MELO3C028681.jh1 vs. NCBI nr
Match: KAA0063733.1 (hypothetical protein E6C27_scaffold1290G00140 [Cucumis melo var. makuwa] >TYK10959.1 hypothetical protein E5676_scaffold107G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (474), Expect = 2.78e-55
Identity = 94/117 (80.34%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 22  MRKIDLIEVRLKIRYKYTWFIPTQVNITDSKGNIFMVQTISYPEGRWFKERNANIHGSFT 81
           MRK DLIEVRLKIR+ Y  FIP Q+NI +SKGNIF VQT+S+ EGRWFKERNANIHGSFT
Sbjct: 1   MRKSDLIEVRLKIRHNYISFIPAQINIMNSKGNIFTVQTVSFTEGRWFKERNANIHGSFT 60

Query: 82  RQVVLEFNEFDFEAEKYSFMGFVATPLEKREKKPKKAHKNSQNSNERPTISNSPDST 138
           RQ  LEFNEFDFEAEKYSFMGFVATP EK++KKPKK+ K+SQNSN+RPTISNS DST
Sbjct: 61  RQAALEFNEFDFEAEKYSFMGFVATPPEKKDKKPKKSLKHSQNSNKRPTISNSLDST 117

[Close]

BLAST of MELO3C028681.jh1 vs. NCBI nr
Match: TYK07346.1 (hypothetical protein E5676_scaffold202G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (441), Expect = 9.42e-51
Identity = 92/119 (77.31%), Postives = 101/119 (84.87%), Query Frame = 0


Query: 22  MRKIDLIEVRLKIRYKYTWFIPTQVNITDSKGNIFMVQTISYPEGRWFKERNANIHGSFT 81
           MRK DLIEVR KIR+ YT FIP Q+ ITDSKGNIF VQT+S+ EGR FKERNANIHGSFT
Sbjct: 1   MRKTDLIEVRPKIRHNYTGFIPAQIYITDSKGNIFTVQTVSFTEGRCFKERNANIHGSFT 60

Query: 82  RQVVLEFNEFDFEAEKYSFMGFVATPLEKR--EKKPKKAHKNSQNSNERPTISNSPDST 138
           RQ  LEFNEFDF+AEKY FMGFVATP EK+  EKK KK  K+S+NSN+RPTISNSPDST
Sbjct: 61  RQAALEFNEFDFDAEKYPFMGFVATPPEKKKKEKKLKKNPKHSRNSNKRPTISNSPDST 119

[Close]

BLAST of MELO3C028681.jh1 vs. NCBI nr
Match: KAA0046238.1 (hypothetical protein E6C27_scaffold284G00350 [Cucumis melo var. makuwa] >TYK18960.1 hypothetical protein E5676_scaffold418G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (295), Expect = 6.41e-31
Identity = 50/100 (50.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 2   SSYKQIGDACGGLIEVSKSKMRKIDLIEVRLKIRYKYTWFIPTQVNITDSKGNIFMVQTI 61
           +S+ +IGDACGG ++V+  K  K DLIE+ +KI Y Y+ FIPT   + D +GN F++QTI
Sbjct: 32  NSFTKIGDACGGYVDVASEKKNKFDLIEIVIKIHYNYSRFIPTTTRLIDEEGNCFIIQTI 91

Query: 62  SYPEGRWFKERNANIHGSFTRQVVLEFNEFDFEAEKYSFM 101
           +  E RW KER+  IHG+FTR+  + FNEF+ +AE+Y+F+
Sbjct: 92  TNTESRWLKERSPRIHGTFTRKAAVSFNEFNNQAEQYNFI 131

[Close]

BLAST of MELO3C028681.jh1 vs. ExPASy TrEMBL
Match: A0A5A7THF9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4170G00120 PE=4 SV=1)

HSP 1 Score: 211 bits (536), Expect = 7.16e-65
Identity = 107/138 (77.54%), Postives = 118/138 (85.51%), Query Frame = 0


Query: 1   MSSYKQIGDACGGLIEVSKSKMRKIDLIEVRLKIRYKYTWFIPTQVNITDSKGNIFMVQT 60
           MS+YKQIGDACGGL+EVSKS MRK  LIEVRLKIR+ YT  I  Q+NITD+K NIF VQT
Sbjct: 67  MSTYKQIGDACGGLVEVSKSTMRKTYLIEVRLKIRHNYTRLILAQINITDNKNNIFTVQT 126

Query: 61  ISYPEGRWFKERNANIHGSFTRQVVLEFNEFDFEAEKYSFMGFVATPLEKREKKPKKAHK 120
           ISY EGRWFKERNANIHGSFTRQ  L+FNEFDFEA++YSFM F ATP +K EKKPKK  K
Sbjct: 127 ISYTEGRWFKERNANIHGSFTRQAALKFNEFDFEAKQYSFMRFTATPPKKEEKKPKKTQK 186

Query: 121 NSQNSNERPTISNSPDST 138
           NS+NSNERP+ISNS DST
Sbjct: 187 NSRNSNERPSISNSLDST 204

[Close]

BLAST of MELO3C028681.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DT94 (Putative amidohydrolase ytcJ OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00450 PE=4 SV=1)

HSP 1 Score: 189 bits (480), Expect = 2.42e-59
Identity = 91/120 (75.83%), Postives = 102/120 (85.00%), Query Frame = 0


Query: 1   MSSYKQIGDACGGLIEVSKSKMRKIDLIEVRLKIRYKYTWFIPTQVNITDSKGNIFMVQT 60
           M+SY+QIGDACGGL+EVSKS MRK DLIEVRLKIR+ YT FIP Q+NI DSKGNIF +QT
Sbjct: 21  MNSYRQIGDACGGLVEVSKSTMRKTDLIEVRLKIRHNYTGFIPAQINIKDSKGNIFTIQT 80

Query: 61  ISYPEGRWFKERNANIHGSFTRQVVLEFNEFDFEAEKYSFMGFVATPLEKREKKPKKAHK 120
           +S+ E RWFKERNANIH  FTRQ  LEFNEFDFEAEKYSFMGFV TP +K++KK KK  K
Sbjct: 81  VSFTEERWFKERNANIHSYFTRQAALEFNEFDFEAEKYSFMGFVVTPPKKKDKKLKKTLK 140

[Close]

BLAST of MELO3C028681.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V6K4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00420 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 1.35e-55
Identity = 94/117 (80.34%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 22  MRKIDLIEVRLKIRYKYTWFIPTQVNITDSKGNIFMVQTISYPEGRWFKERNANIHGSFT 81
           MRK DLIEVRLKIR+ Y  FIP Q+NI +SKGNIF VQT+S+ EGRWFKERNANIHGSFT
Sbjct: 1   MRKSDLIEVRLKIRHNYISFIPAQINIMNSKGNIFTVQTVSFTEGRWFKERNANIHGSFT 60

Query: 82  RQVVLEFNEFDFEAEKYSFMGFVATPLEKREKKPKKAHKNSQNSNERPTISNSPDST 138
           RQ  LEFNEFDFEAEKYSFMGFVATP EK++KKPKK+ K+SQNSN+RPTISNS DST
Sbjct: 61  RQAALEFNEFDFEAEKYSFMGFVATPPEKKDKKPKKSLKHSQNSNKRPTISNSLDST 117

[Close]

BLAST of MELO3C028681.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CAI5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00620 PE=4 SV=1)

HSP 1 Score: 174 bits (441), Expect = 4.56e-51
Identity = 92/119 (77.31%), Postives = 101/119 (84.87%), Query Frame = 0


Query: 22  MRKIDLIEVRLKIRYKYTWFIPTQVNITDSKGNIFMVQTISYPEGRWFKERNANIHGSFT 81
           MRK DLIEVR KIR+ YT FIP Q+ ITDSKGNIF VQT+S+ EGR FKERNANIHGSFT
Sbjct: 1   MRKTDLIEVRPKIRHNYTGFIPAQIYITDSKGNIFTVQTVSFTEGRCFKERNANIHGSFT 60

Query: 82  RQVVLEFNEFDFEAEKYSFMGFVATPLEKR--EKKPKKAHKNSQNSNERPTISNSPDST 138
           RQ  LEFNEFDF+AEKY FMGFVATP EK+  EKK KK  K+S+NSN+RPTISNSPDST
Sbjct: 61  RQAALEFNEFDFDAEKYPFMGFVATPPEKKKKEKKLKKNPKHSRNSNKRPTISNSPDST 119

[Close]

BLAST of MELO3C028681.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D612 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00470 PE=4 SV=1)

HSP 1 Score: 118 bits (295), Expect = 3.11e-31
Identity = 50/100 (50.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 2   SSYKQIGDACGGLIEVSKSKMRKIDLIEVRLKIRYKYTWFIPTQVNITDSKGNIFMVQTI 61
           +S+ +IGDACGG ++V+  K  K DLIE+ +KI Y Y+ FIPT   + D +GN F++QTI
Sbjct: 32  NSFTKIGDACGGYVDVASEKKNKFDLIEIVIKIHYNYSRFIPTTTRLIDEEGNCFIIQTI 91

Query: 62  SYPEGRWFKERNANIHGSFTRQVVLEFNEFDFEAEKYSFM 101
           +  E RW KER+  IHG+FTR+  + FNEF+ +AE+Y+F+
Sbjct: 92  TNTESRWLKERSPRIHGTFTRKAAVSFNEFNNQAEQYNFI 131

The following BLAST results are available for this feature:

BLAST of MELO3C028681.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040709.1	1.48e-64	77.54	hypothetical protein E6C27_scaffold529G00290 [Cucumis melo var. makuwa] >TYK1427...	[more]
KAA0047508.1	5.00e-59	75.83	putative amidohydrolase ytcJ [Cucumis melo var. makuwa] >TYK26480.1 putative ami...	[more]
KAA0063733.1	2.78e-55	80.34	hypothetical protein E6C27_scaffold1290G00140 [Cucumis melo var. makuwa] >TYK109...	[more]
TYK07346.1	9.42e-51	77.31	hypothetical protein E5676_scaffold202G00620 [Cucumis melo var. makuwa]	[more]
KAA0046238.1	6.41e-31	50.00	hypothetical protein E6C27_scaffold284G00350 [Cucumis melo var. makuwa] >TYK1896...	[more]

BLAST of MELO3C028681.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028681.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7THF9	7.16e-65	77.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DT94	2.42e-59	75.83	Putative amidohydrolase ytcJ OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7V6K4	1.35e-55	80.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CAI5	4.56e-51	77.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D612	3.11e-31	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C028681.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028681.jh1.t1	MELO3C028681.jh1.t1	mRNA