MELO3C028540 (gene) Melon (DHL92) v4

Overview
NameMELO3C028540
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionAlanine--tRNA ligase
Locationchr06: 10398131 .. 10398796 (-)
RNA-Seq ExpressionMELO3C028540
SyntenyMELO3C028540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCATCTGCAATCTTTGGCTAAAAAAAATGATGTTATTTATTGTCCATTCTTATGGTGATTAGATTTGTTGGGAATTACAAGGGAGGAAATTTGATCTTGCTAAGAAGTTCAGAACAATAATAGTCAATCATCGTTGGCTTGAAGATTGCATCAAACATGGAAAGCTCTCTCTCTCTCTCTCTCTCTCACACACACACACGCAACACCCACCCCACAGCCACAGCCACAGTCACTTGCTGCTTGAATGATGGTGTTACTAATAACATTTTCATGATAGTTGATGGCGGAAGAGAGGGGCTTGCTAGTTGATACTCAGGGTTTTAACAATGCTATGGATGAGGCGAGCGAAAGATCAAGAAGTGCTCAAAATAAGGTGAGTTCTTTTTGCTAGAGTACACTCACATTCTATTGTTGTGTTTTACAGTCTGTTGTTCTACCTTATGTGGATCTACATGACGAAACATTGTACATGCTTTCATAGACAAAACAATCCAAAAGTCTATGAATGACGATGAATAATTTAGTTGAATTGGAGAAAACATTTCATTAGTTTCTTTTGTTTATTCCTCTTCCAGCAAGCAGGTGGTACAATTGCCATGGATGCTGATGCTACAGCAGCATTGCGCAAACAATCCAAAAGTCTATTAGTTGCAGTTTTAGTTATT

mRNA sequence

CTCATCTGCAATCTTTGGCTAAAAAAAATGATGTTATTTATTGTCCATTCTTATGGTGATTAGATTTGTTGGGAATTACAAGGGAGGAAATTTGATCTTGCTAAGAAGTTCAGAACAATAATAGTCAATCATCGTTGGCTTGAAGATTGCATCAAACATGGAAAGCTCTCTCTCTCTCTCTCTCTCTCACACACACACACGCAACACCCACCCCACAGCCACAGCCACAGTCACTTGCTGCTTGAATGATGGTGTTACTAATAACATTTTCATGATAGTTGATGGCGGAAGAGAGGGGCTTGCTAGTTGATACTCAGGGTTTTAACAATGCTATGGATGAGGCGAGCGAAAGATCAAGAAGTGCTCAAAATAAGCAAGCAGGTGGTACAATTGCCATGGATGCTGATGCTACAGCAGCATTGCGCAAACAATCCAAAAGTCTATTAGTTGCAGTTTTAGTTATT

Coding sequence (CDS)

ATGGCGGAAGAGAGGGGCTTGCTAGTTGATACTCAGGGTTTTAACAATGCTATGGATGAGGCGAGCGAAAGATCAAGAAGTGCTCAAAATAAGCAAGCAGGTGGTACAATTGCCATGGATGCTGATGCTACAGCAGCATTGCGCAAACAATCCAAAAGTCTATTAGTTGCAGTTTTAGTTATT

Protein sequence

MAEERGLLVDTQGFNNAMDEASERSRSAQNKQAGGTIAMDADATAALRKQSKSLLVAVLVI
Homology
[Close]
BLAST of MELO3C028540 vs. NCBI nr
Match: TYK22829.1 (alanine--tRNA ligase [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 9.5e-20
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 1   MAEERGLLVDTQGFNNAMDEASERSRSAQNKQAGGTIAMDADATAALRKQSKSLLVAVLV 60
           M EERGLLVDTQGFNNAMDEA ERSRSAQNKQAGGTIAMDADATAALRKQSKSLLVAVLV
Sbjct: 132 MVEERGLLVDTQGFNNAMDEARERSRSAQNKQAGGTIAMDADATAALRKQSKSLLVAVLV 191

Query: 61  I 62
           I
Sbjct: 192 I 192

[Close]
BLAST of MELO3C028540 vs. NCBI nr
Match: KAA0026025.1 (Alanine--tRNA ligase [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 9.5e-20
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 1   MAEERGLLVDTQGFNNAMDEASERSRSAQNKQAGGTIAMDADATAALRKQSKSLLVAVLV 60
           M EERGLLVDTQGFNNAMDEA ERSRSAQNKQAGGTIAMDADATAALRKQSKSLLVAVLV
Sbjct: 282 MVEERGLLVDTQGFNNAMDEARERSRSAQNKQAGGTIAMDADATAALRKQSKSLLVAVLV 341

Query: 61  I 62
           I
Sbjct: 342 I 342

[Close]
BLAST of MELO3C028540 vs. NCBI nr
Match: KAA0039051.1 (alanine--tRNA ligase [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 8.9e-18
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1   MAEERGLLVDTQGFNNAMDEASERSRSAQNKQAGGTIAMDADATAALRKQSKSL 55
           MAEERGLLVDTQGFNNAMDEASERSRSAQNKQAGGTIAMDADATAALRKQSK+L
Sbjct: 346 MAEERGLLVDTQGFNNAMDEASERSRSAQNKQAGGTIAMDADATAALRKQSKNL 399

[Close]
BLAST of MELO3C028540 vs. NCBI nr
Match: KAA0052760.1 (alanine--tRNA ligase [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 1   MAEERGLLVDTQGFNNAMDEASERSRSAQNKQAGGTIAMDADATAALRKQ 51
           MAEERGLLVDTQGFNNAMDEA ERSRSAQNKQAGGTIAMDADATAALRKQ
Sbjct: 506 MAEERGLLVDTQGFNNAMDEARERSRSAQNKQAGGTIAMDADATAALRKQ 555

[Close]
BLAST of MELO3C028540 vs. NCBI nr
Match: TYK04196.1 (alanine--tRNA ligase [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 1   MAEERGLLVDTQGFNNAMDEASERSRSAQNKQAGGTIAMDADATAALRKQ 51
           MAEERGLLVDTQGFNNAMDEA ERSRSAQNKQAGGTIAMDADATAALRKQ
Sbjct: 432 MAEERGLLVDTQGFNNAMDEARERSRSAQNKQAGGTIAMDADATAALRKQ 481

[Close]
BLAST of MELO3C028540 vs. ExPASy Swiss-Prot
Match: P36428 (Alanine--tRNA ligase OS=Arabidopsis thaliana OX=3702 GN=ALATS PE=1 SV=3)

HSP 1 Score: 75.5 bits (184), Expect = 2.4e-13
Identity = 40/53 (75.47%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 1   MAEERGLLVDTQGFNNAMDEASERSRSAQNKQAGGTIAMDADATAALRKQSKS 54
           MAEERGLLVD  GFN AM+EA ERSRSAQNKQAGG I MDADAT+ L K   S
Sbjct: 480 MAEERGLLVDVDGFNKAMEEARERSRSAQNKQAGGAIVMDADATSTLHKAGVS 532

[Close]
BLAST of MELO3C028540 vs. ExPASy TrEMBL
Match: A0A5A7SNI9 (Alanine--tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00040 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.6e-20
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 1   MAEERGLLVDTQGFNNAMDEASERSRSAQNKQAGGTIAMDADATAALRKQSKSLLVAVLV 60
           M EERGLLVDTQGFNNAMDEA ERSRSAQNKQAGGTIAMDADATAALRKQSKSLLVAVLV
Sbjct: 282 MVEERGLLVDTQGFNNAMDEARERSRSAQNKQAGGTIAMDADATAALRKQSKSLLVAVLV 341

Query: 61  I 62
           I
Sbjct: 342 I 342

[Close]
BLAST of MELO3C028540 vs. ExPASy TrEMBL
Match: A0A5D3DHV4 (Alanine--tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00060 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.6e-20
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 1   MAEERGLLVDTQGFNNAMDEASERSRSAQNKQAGGTIAMDADATAALRKQSKSLLVAVLV 60
           M EERGLLVDTQGFNNAMDEA ERSRSAQNKQAGGTIAMDADATAALRKQSKSLLVAVLV
Sbjct: 132 MVEERGLLVDTQGFNNAMDEARERSRSAQNKQAGGTIAMDADATAALRKQSKSLLVAVLV 191

Query: 61  I 62
           I
Sbjct: 192 I 192

[Close]
BLAST of MELO3C028540 vs. ExPASy TrEMBL
Match: A0A5A7TBQ4 (Alanine--tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001450 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.3e-18
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1   MAEERGLLVDTQGFNNAMDEASERSRSAQNKQAGGTIAMDADATAALRKQSKSL 55
           MAEERGLLVDTQGFNNAMDEASERSRSAQNKQAGGTIAMDADATAALRKQSK+L
Sbjct: 346 MAEERGLLVDTQGFNNAMDEASERSRSAQNKQAGGTIAMDADATAALRKQSKNL 399

[Close]
BLAST of MELO3C028540 vs. ExPASy TrEMBL
Match: A0A5D3C1B3 (Alanine--tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00220 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.3e-16
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 1   MAEERGLLVDTQGFNNAMDEASERSRSAQNKQAGGTIAMDADATAALRKQ 51
           MAEERGLLVDTQGFNNAMDEA ERSRSAQNKQAGGTIAMDADATAALRKQ
Sbjct: 432 MAEERGLLVDTQGFNNAMDEARERSRSAQNKQAGGTIAMDADATAALRKQ 481

[Close]
BLAST of MELO3C028540 vs. ExPASy TrEMBL
Match: A0A5A7UC57 (Alanine--tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43055G00130 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.3e-16
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 1   MAEERGLLVDTQGFNNAMDEASERSRSAQNKQAGGTIAMDADATAALRKQ 51
           MAEERGLLVDTQGFNNAMDEA ERSRSAQNKQAGGTIAMDADATAALRKQ
Sbjct: 506 MAEERGLLVDTQGFNNAMDEARERSRSAQNKQAGGTIAMDADATAALRKQ 555

[Close]
BLAST of MELO3C028540 vs. TAIR 10
Match: AT1G50200.1 (Alanyl-tRNA synthetase )

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-14
Identity = 40/53 (75.47%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 1   MAEERGLLVDTQGFNNAMDEASERSRSAQNKQAGGTIAMDADATAALRKQSKS 54
           MAEERGLLVD  GFN AM+EA ERSRSAQNKQAGG I MDADAT+ L K   S
Sbjct: 480 MAEERGLLVDVDGFNKAMEEARERSRSAQNKQAGGAIVMDADATSTLHKAGVS 532

[Close]
BLAST of MELO3C028540 vs. TAIR 10
Match: AT1G50200.2 (Alanyl-tRNA synthetase )

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-14
Identity = 40/53 (75.47%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 1   MAEERGLLVDTQGFNNAMDEASERSRSAQNKQAGGTIAMDADATAALRKQSKS 54
           MAEERGLLVD  GFN AM+EA ERSRSAQNKQAGG I MDADAT+ L K   S
Sbjct: 432 MAEERGLLVDVDGFNKAMEEARERSRSAQNKQAGGAIVMDADATSTLHKAGVS 484

The following BLAST results are available for this feature:
BLAST of MELO3C028540 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK22829.19.5e-2096.72alanine--tRNA ligase [Cucumis melo var. makuwa][more]
KAA0026025.19.5e-2096.72Alanine--tRNA ligase [Cucumis melo var. makuwa][more]
KAA0039051.18.9e-1898.15alanine--tRNA ligase [Cucumis melo var. makuwa][more]
KAA0052760.11.1e-1598.00alanine--tRNA ligase [Cucumis melo var. makuwa][more]
TYK04196.11.1e-1598.00alanine--tRNA ligase [Cucumis melo var. makuwa][more]
BLAST of MELO3C028540 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P364282.4e-1375.47Alanine--tRNA ligase OS=Arabidopsis thaliana OX=3702 GN=ALATS PE=1 SV=3[more]
BLAST of MELO3C028540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SNI94.6e-2096.72Alanine--tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581... [more]
A0A5D3DHV44.6e-2096.72Alanine--tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115... [more]
A0A5A7TBQ44.3e-1898.15Alanine--tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G... [more]
A0A5D3C1B35.3e-1698.00Alanine--tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold185... [more]
A0A5A7UC575.3e-1698.00Alanine--tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430... [more]
BLAST of MELO3C028540 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G50200.11.7e-1475.47Alanyl-tRNA synthetase [more]
AT1G50200.21.7e-1475.47Alanyl-tRNA synthetase [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..34
NoneNo IPR availablePANTHERPTHR11777:SF35BNACNNG61840D PROTEINcoord: 1..50
NoneNo IPR availablePANTHERPTHR11777ALANYL-TRNA SYNTHETASEcoord: 1..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028540.1MELO3C028540.1mRNA