MELO3C028482.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C028482.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Ty3/gypsy retrotransposon protein
Location	chr12: 22752164 .. 22752808 (+)
RNA-Seq Expression	MELO3C028482.jh1
Synteny	MELO3C028482.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGATAGTGCGTACGAGGGAGAGATGGTGGAAGTTAGCCCGGTGGTAGAGTTGTCCCTGAACTCCGTTGTGGGGTTGACAGCACCGGGTACGTTCAAGCTAAAAGGAACGGCGGAGAACCAAGAAATAGTGATCATGGTGGATTGTGGGGCGACCCATAATTTCATCTCCCTGAAGCTGGTCGAGAATCTAAAATTACCTATGGCGGAAACAACGAATTACGGAGTTATTATGGGGTCCGGGAAGGCGGTGCAAGGCCGCGGAATGTGTAAGGGTATCACAGTGGGGCTGCCGGTGATATCCATAGTAGAGGACTTCTTGCCGCTGGAACTGGGTAACATCGATATGGTGCTGGGGATGCAGTGGCTGCAGAAACAGGGAGCAATGACAGTGGATTGGAAAGCCCTCACCATGACCTTTGTGGTCGGAGATACTAAGGTAATCCTAAAAGGGGATCCTTCGCTGACCCGAATGGAGATATCCTTGAAAGTGTTAGTTAAAACGTGGCAACCGGATGATCAGGGATTTCTAGTTAACTTCAGAGCCATGGGGATTCCCAAGGCAGACCGGGAATTAGTAGTGACAGATGCTGTGGAGGACTATCAATCAGAATTTGCACAGCTACAGCAGGAATTCGGTGAT

mRNA sequence

ATGGTGGATAGTGCGTACGAGGGAGAGATGGTGGAAGTTAGCCCGGTGGTAGAGTTGTCCCTGAACTCCGTTGTGGGGTTGACAGCACCGGGTACGTTCAAGCTAAAAGGAACGGCGGAGAACCAAGAAATAGTGATCATGGTGGATTGTGGGGCGACCCATAATTTCATCTCCCTGAAGCTGGTCGAGAATCTAAAATTACCTATGGCGGAAACAACGAATTACGGAGTTATTATGGGGTCCGGGAAGGCGGTGCAAGGCCGCGGAATGTGTAAGGGTATCACAGTGGGGCTGCCGGTGATATCCATAGTAGAGGACTTCTTGCCGCTGGAACTGGGTAACATCGATATGGTGCTGGGGATGCAGTGGCTGCAGAAACAGGGAGCAATGACAGTGGATTGGAAAGCCCTCACCATGACCTTTGTGGTCGGAGATACTAAGGTAATCCTAAAAGGGGATCCTTCGCTGACCCGAATGGAGATATCCTTGAAAGTGTTAGTTAAAACGTGGCAACCGGATGATCAGGGATTTCTAGTTAACTTCAGAGCCATGGGGATTCCCAAGGCAGACCGGGAATTAGTAGTGACAGATGCTGTGGAGGACTATCAATCAGAATTTGCACAGCTACAGCAGGAATTCGGTGAT

Coding sequence (CDS)

ATGGTGGATAGTGCGTACGAGGGAGAGATGGTGGAAGTTAGCCCGGTGGTAGAGTTGTCCCTGAACTCCGTTGTGGGGTTGACAGCACCGGGTACGTTCAAGCTAAAAGGAACGGCGGAGAACCAAGAAATAGTGATCATGGTGGATTGTGGGGCGACCCATAATTTCATCTCCCTGAAGCTGGTCGAGAATCTAAAATTACCTATGGCGGAAACAACGAATTACGGAGTTATTATGGGGTCCGGGAAGGCGGTGCAAGGCCGCGGAATGTGTAAGGGTATCACAGTGGGGCTGCCGGTGATATCCATAGTAGAGGACTTCTTGCCGCTGGAACTGGGTAACATCGATATGGTGCTGGGGATGCAGTGGCTGCAGAAACAGGGAGCAATGACAGTGGATTGGAAAGCCCTCACCATGACCTTTGTGGTCGGAGATACTAAGGTAATCCTAAAAGGGGATCCTTCGCTGACCCGAATGGAGATATCCTTGAAAGTGTTAGTTAAAACGTGGCAACCGGATGATCAGGGATTTCTAGTTAACTTCAGAGCCATGGGGATTCCCAAGGCAGACCGGGAATTAGTAGTGACAGATGCTGTGGAGGACTATCAATCAGAATTTGCACAGCTACAGCAGGAATTCGGTGAT

Protein sequence

MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTAENQEIVIMVDCGATHNFISLKLVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLGMQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVNFRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD

Homology

[Close]

BLAST of MELO3C028482.jh1 vs. NCBI nr
Match: KAA0036997.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 415 bits (1067), Expect = 1.31e-139
Identity = 211/215 (98.14%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTAENQEIVIMVDCGATHNFISLK 60
           MVDSA EGEMVEVSPVVELSLNSVVGLTAPGTFKLKGT ENQEIVIMVDCGATHNFISLK
Sbjct: 363 MVDSACEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTVENQEIVIMVDCGATHNFISLK 422

Query: 61  LVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLG 120
           LVENLKLPMAETTNYGVIMGSGKAVQGRG+CKGITVGLPVISIVEDFLPLELGNIDMVLG
Sbjct: 423 LVENLKLPMAETTNYGVIMGSGKAVQGRGICKGITVGLPVISIVEDFLPLELGNIDMVLG 482

Query: 121 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN 180
           MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN
Sbjct: 483 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN 542

Query: 181 FRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD 215
           FRAMGIPKADRELVVTDAVE+YQSEFAQLQQEFGD
Sbjct: 543 FRAMGIPKADRELVVTDAVEEYQSEFAQLQQEFGD 577

[Close]

BLAST of MELO3C028482.jh1 vs. NCBI nr
Match: TYK17386.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 412 bits (1058), Expect = 1.92e-138
Identity = 209/215 (97.21%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 1   MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTAENQEIVIMVDCGATHNFISLK 60
           MVDSA EGEMVEVSPVVELSLNSVVGLTAPGTFKLKGT ENQEIVIMVDCGATHNFISLK
Sbjct: 363 MVDSACEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTVENQEIVIMVDCGATHNFISLK 422

Query: 61  LVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLG 120
           LVENLKLPMAETTNYGVIMGSGKAVQGRG+CKGITVGLPVISIVEDFLPLELGNIDMVLG
Sbjct: 423 LVENLKLPMAETTNYGVIMGSGKAVQGRGICKGITVGLPVISIVEDFLPLELGNIDMVLG 482

Query: 121 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN 180
           MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN
Sbjct: 483 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN 542

Query: 181 FRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD 215
           FRAMGIPKADRE+VVTDAVE+YQSEFAQLQQEF D
Sbjct: 543 FRAMGIPKADREIVVTDAVEEYQSEFAQLQQEFDD 577

[Close]

BLAST of MELO3C028482.jh1 vs. NCBI nr
Match: KAA0049174.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 409 bits (1052), Expect = 6.36e-138
Identity = 208/215 (96.74%), Postives = 211/215 (98.14%), Query Frame = 0


Query: 1   MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTAENQEIVIMVDCGATHNFISLK 60
           MVDSA EGEMVEVSPVVELSLNSVVGLTAPGTFKLKGT ENQEIVIMVDCGATHNFISLK
Sbjct: 333 MVDSACEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTVENQEIVIMVDCGATHNFISLK 392

Query: 61  LVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLG 120
           LVENLKLPMAETTNYGVIMGSGKAVQGRG+CKGITVGLPVISIVEDFLPLELGNIDMVLG
Sbjct: 393 LVENLKLPMAETTNYGVIMGSGKAVQGRGICKGITVGLPVISIVEDFLPLELGNIDMVLG 452

Query: 121 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN 180
           MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN
Sbjct: 453 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN 512

Query: 181 FRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD 215
           FRAMGIPKADRE+VV DAVE+YQSEFAQLQQEF D
Sbjct: 513 FRAMGIPKADREIVVIDAVEEYQSEFAQLQQEFDD 547

[Close]

BLAST of MELO3C028482.jh1 vs. NCBI nr
Match: KAA0058899.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 420 bits (1080), Expect = 1.44e-136
Identity = 213/215 (99.07%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 1   MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTAENQEIVIMVDCGATHNFISLK 60
           MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGT ENQEIVIMVDCGATHNFISLK
Sbjct: 1   MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTVENQEIVIMVDCGATHNFISLK 60

Query: 61  LVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLG 120
           LVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLG
Sbjct: 61  LVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLG 120

Query: 121 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN 180
           MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLT+MEISLKVLVKTWQPDDQGFLVN
Sbjct: 121 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTQMEISLKVLVKTWQPDDQGFLVN 180

Query: 181 FRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD 215
           FRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD
Sbjct: 181 FRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD 215

[Close]

BLAST of MELO3C028482.jh1 vs. NCBI nr
Match: KAA0056980.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 423 bits (1088), Expect = 1.96e-136
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTAENQEIVIMVDCGATHNFISLK 60
           MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTAENQEIVIMVDCGATHNFISLK
Sbjct: 119 MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTAENQEIVIMVDCGATHNFISLK 178

Query: 61  LVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLG 120
           LVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLG
Sbjct: 179 LVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLG 238

Query: 121 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN 180
           MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN
Sbjct: 239 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN 298

Query: 181 FRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD 215
           FRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD
Sbjct: 299 FRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD 333

[Close]

BLAST of MELO3C028482.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T606 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00810 PE=4 SV=1)

HSP 1 Score: 415 bits (1067), Expect = 6.35e-140
Identity = 211/215 (98.14%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTAENQEIVIMVDCGATHNFISLK 60
           MVDSA EGEMVEVSPVVELSLNSVVGLTAPGTFKLKGT ENQEIVIMVDCGATHNFISLK
Sbjct: 363 MVDSACEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTVENQEIVIMVDCGATHNFISLK 422

Query: 61  LVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLG 120
           LVENLKLPMAETTNYGVIMGSGKAVQGRG+CKGITVGLPVISIVEDFLPLELGNIDMVLG
Sbjct: 423 LVENLKLPMAETTNYGVIMGSGKAVQGRGICKGITVGLPVISIVEDFLPLELGNIDMVLG 482

Query: 121 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN 180
           MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN
Sbjct: 483 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN 542

Query: 181 FRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD 215
           FRAMGIPKADRELVVTDAVE+YQSEFAQLQQEFGD
Sbjct: 543 FRAMGIPKADRELVVTDAVEEYQSEFAQLQQEFGD 577

[Close]

BLAST of MELO3C028482.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D378 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002460 PE=4 SV=1)

HSP 1 Score: 412 bits (1058), Expect = 9.32e-139
Identity = 209/215 (97.21%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 1   MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTAENQEIVIMVDCGATHNFISLK 60
           MVDSA EGEMVEVSPVVELSLNSVVGLTAPGTFKLKGT ENQEIVIMVDCGATHNFISLK
Sbjct: 363 MVDSACEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTVENQEIVIMVDCGATHNFISLK 422

Query: 61  LVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLG 120
           LVENLKLPMAETTNYGVIMGSGKAVQGRG+CKGITVGLPVISIVEDFLPLELGNIDMVLG
Sbjct: 423 LVENLKLPMAETTNYGVIMGSGKAVQGRGICKGITVGLPVISIVEDFLPLELGNIDMVLG 482

Query: 121 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN 180
           MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN
Sbjct: 483 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN 542

Query: 181 FRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD 215
           FRAMGIPKADRE+VVTDAVE+YQSEFAQLQQEF D
Sbjct: 543 FRAMGIPKADREIVVTDAVEEYQSEFAQLQQEFDD 577

[Close]

BLAST of MELO3C028482.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U1I8 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G004090 PE=4 SV=1)

HSP 1 Score: 409 bits (1052), Expect = 3.08e-138
Identity = 208/215 (96.74%), Postives = 211/215 (98.14%), Query Frame = 0


Query: 1   MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTAENQEIVIMVDCGATHNFISLK 60
           MVDSA EGEMVEVSPVVELSLNSVVGLTAPGTFKLKGT ENQEIVIMVDCGATHNFISLK
Sbjct: 333 MVDSACEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTVENQEIVIMVDCGATHNFISLK 392

Query: 61  LVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLG 120
           LVENLKLPMAETTNYGVIMGSGKAVQGRG+CKGITVGLPVISIVEDFLPLELGNIDMVLG
Sbjct: 393 LVENLKLPMAETTNYGVIMGSGKAVQGRGICKGITVGLPVISIVEDFLPLELGNIDMVLG 452

Query: 121 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN 180
           MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN
Sbjct: 453 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN 512

Query: 181 FRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD 215
           FRAMGIPKADRE+VV DAVE+YQSEFAQLQQEF D
Sbjct: 513 FRAMGIPKADREIVVIDAVEEYQSEFAQLQQEFDD 547

[Close]

BLAST of MELO3C028482.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UZE8 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00660 PE=4 SV=1)

HSP 1 Score: 420 bits (1080), Expect = 6.95e-137
Identity = 213/215 (99.07%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 1   MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTAENQEIVIMVDCGATHNFISLK 60
           MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGT ENQEIVIMVDCGATHNFISLK
Sbjct: 1   MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTVENQEIVIMVDCGATHNFISLK 60

Query: 61  LVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLG 120
           LVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLG
Sbjct: 61  LVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLG 120

Query: 121 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN 180
           MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLT+MEISLKVLVKTWQPDDQGFLVN
Sbjct: 121 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTQMEISLKVLVKTWQPDDQGFLVN 180

Query: 181 FRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD 215
           FRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD
Sbjct: 181 FRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD 215

[Close]

BLAST of MELO3C028482.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UPE1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G001610 PE=4 SV=1)

HSP 1 Score: 423 bits (1088), Expect = 9.47e-137
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTAENQEIVIMVDCGATHNFISLK 60
           MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTAENQEIVIMVDCGATHNFISLK
Sbjct: 119 MVDSAYEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTAENQEIVIMVDCGATHNFISLK 178

Query: 61  LVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLG 120
           LVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLG
Sbjct: 179 LVENLKLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLG 238

Query: 121 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN 180
           MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN
Sbjct: 239 MQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDDQGFLVN 298

Query: 181 FRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD 215
           FRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD
Sbjct: 299 FRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGD 333

[Close]

BLAST of MELO3C028482.jh1 vs. TAIR 10
Match: AT3G29750.1 (Eukaryotic aspartyl protease family protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-15
Identity = 41/120 (34.17%), Postives = 69/120 (57.50%), Query Frame = 0


Query: 24  VVGLTAPGTFKLKGTAENQEIVIMVDCGATHNFISLKLVENLKLPMAETTNYGVIMGSGK 83
           V+ LT     +  G   + ++V+ +D GAT NFI ++L  +LKLP + T    V++G  +
Sbjct: 115 VIDLTRNKGMRFYGFILDHKVVVAIDSGATDNFILVELAFSLKLPTSITNQASVLLGQRQ 174

Query: 84  AVQGRGMCKGITVGLPVISIVEDFLPLELG--NIDMVLGMQWLQKQGAMTVDWKALTMTF 142
            +Q  G C GI + +  + I E+FL L+L   ++D++LG +WL K G   V+W+    +F
Sbjct: 175 CIQSVGTCLGIRLWVQEVEITENFLLLDLAKTDVDVILGYEWLSKLGETMVNWQNQDFSF 234

[Close]

BLAST of MELO3C028482.jh1 vs. TAIR 10
Match: AT3G30770.1 (Eukaryotic aspartyl protease family protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-10
Identity = 36/117 (30.77%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 6   YEGEMVEVSPVVELSLNSVVGLTAPGTFKLKGTAENQEIVIMVDCGATHNFISLKLVENL 65
           +EG + +   + ++   S    T     +  G     ++V+++D GAT+NFIS +L   L
Sbjct: 257 WEGLLEDFKTIRQVKRQSTTEFTKGKDMRFYGFISCHKVVVVIDSGATNNFISDELALVL 316

Query: 66  KLPMAETTNYGVIMGSGKAVQGRGMCKGITVGLPVISIVEDFLPLEL--GNIDMVLG 121
           KLP + T    V++G  + +Q  G C GI + +  + I E+FL L+L   ++D++LG
Sbjct: 317 KLPTSTTNQASVLLGQRQCIQTIGTCFGINLLVQEVEINENFLLLDLTKTDVDVILG 373

[Close]

BLAST of MELO3C028482.jh1 vs. TAIR 10
Match: AT1G53705.1 (aminoacyl-tRNA ligases;nucleotide binding;ATP binding )

HSP 1 Score: 46.2 bits (108), Expect = 3.8e-05
Identity = 21/57 (36.84%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 79  MGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELG--NIDMVLGMQWLQKQGAMTVD 134
           MG G+ ++ +G C GI++ +   +IVED+L L+L   + D++LG +WL K G   ++
Sbjct: 1   MGHGQHIESKGSCLGISLWIQEAAIVEDYLLLDLNKTDADVILGYKWLSKLGETMIE 57

[Close]

BLAST of MELO3C028482.jh1 vs. TAIR 10
Match: AT1G53705.2 (aminoacyl-tRNA ligases;nucleotide binding;ATP binding )

HSP 1 Score: 46.2 bits (108), Expect = 3.8e-05
Identity = 21/57 (36.84%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 79  MGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELG--NIDMVLGMQWLQKQGAMTVD 134
           MG G+ ++ +G C GI++ +   +IVED+L L+L   + D++LG +WL K G   ++
Sbjct: 1   MGHGQHIESKGSCLGISLWIQEAAIVEDYLLLDLNKTDADVILGYKWLSKLGETMIE 57

The following BLAST results are available for this feature:

BLAST of MELO3C028482.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036997.1	1.31e-139	98.14	gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]	[more]
TYK17386.1	1.92e-138	97.21	gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]	[more]
KAA0049174.1	6.36e-138	96.74	gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]	[more]
KAA0058899.1	1.44e-136	99.07	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056980.1	1.96e-136	100.00	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C028482.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028482.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T606	6.35e-140	98.14	Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3D378	9.32e-139	97.21	Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U1I8	3.08e-138	96.74	Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UZE8	6.95e-137	99.07	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UPE1	9.47e-137	100.00	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of MELO3C028482.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29750.1	1.4e-15	34.17	Eukaryotic aspartyl protease family protein	[more]
AT3G30770.1	1.8e-10	30.77	Eukaryotic aspartyl protease family protein	[more]
AT1G53705.1	3.8e-05	36.84	aminoacyl-tRNA ligases;nucleotide binding;ATP binding	[more]
AT1G53705.2	3.8e-05	36.84	aminoacyl-tRNA ligases;nucleotide binding;ATP binding	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 24..151 e-value: 3.7E-18 score: 67.5
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 30..129
None	No IPR available	PFAM	PF08284	RVP_2	coord: 44..130 e-value: 3.1E-14 score: 52.9
None	No IPR available	PANTHER	PTHR34482:SF28	OS02G0566300 PROTEIN	coord: 10..157
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 10..157
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 35..125 e-value: 1.14747E-17 score: 72.7544

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028482.jh1.t1	MELO3C028482.jh1.t1	mRNA