MELO3C028371 (gene) Melon (DHL92) v4

Overview
NameMELO3C028371
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRibosomal protein L5 (Mitochondrion)
Locationchr07: 6590963 .. 6591824 (+)
RNA-Seq ExpressionMELO3C028371
SyntenyMELO3C028371
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAATGCGAGAGAGAATGCCCCGCACTCAGTTTTCTCGTCCTGGGGTAAAAAGTGGTCCCCCAACGGTTTCTTCCCTTTGGTTCGTATTGGTCATAAATATTTCGATCTTCGTGGCTCGTGCTTTGAGGACTTCAATCCACACTTCTAGCATGCTCCGTGACACATTTTCCCAAGGTATTGGTCCGGAACCGAGCTCGGTGGAGGGAGAACTAAGATGCGATCCAAAATTGTCCAAAAGATGGCCAATGCTTCAACGAGTGGCGAATCCTCGTATGGTGTCAGAAACAACTGGAAATGCATCTGCCTTGAAAAAAATGGGCTGAGCTTGAGGACTTCCGGTGTTCGTTCCAAGAAAACGTGAGCGAGAATGTTCCGGACTCAGTTTTCTCGTCCTAAAGTAAAAAGCGGTCCCCCTACGGTTTCTTGCCTTTGCTTCGTATTGGTCATAAGTCTTTTGATCATTGGGGCTCGTACTCCGAGGACTTTAACCAACACTCTTGGCATGCTATCTGACACGTTTTCCCAAGGTATAGGTCGGGAAGCGAGCTCGTTGGTGGAGAACTAAGGTGCCACCCATAACGATCCAAAAGATGGCCAATGCTTCCAATGAGTGGCGAACGGTCGTCTGTGTCATAAACCACTTGAAATGAACTTGTAGTGAAGGAAACAAGCTGAGCTCGAGGGCTTCCGATGTTCATCCCAAGAAAATGCGAGCGAGAATGCCTCGGACTCAGTTTTCTCAACCTGAGGTAAAAAGCGGTCCCCGACTCTTTCTTCCTTTTGCTTCGTATTGGTCATAAGTCTTTCGATCTTTAGGGCTCGTGCTTCGAGGACTTCAACCCACACTCCTGGCATGCTTC

mRNA sequence

GAAAATGCGAGAGAGAATGCCCCGCACTCAGTTTTCTCGTCCTGGGGTAAAAAGTGGTCCCCCAACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTTTCGATCTTTAGGGCTCGTGCTTCGAGGACTTCAACCCACACTCCTGGCATGCTTC

Coding sequence (CDS)

ATGCGAGAGAGAATGCCCCGCACTCAGTTTTCTCGTCCTGGGGTAAAAAGTGGTCCCCCAACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTTTCGATCTTTAGGGCTCGTGCTTCGAGGACTTCAACCCACACTCCTGGCATGCTT

Protein sequence

MRERMPRTQFSRPGVKSGPPTVSSLCFVLVISLSIFRARASRTSTHTPGML
Homology
BLAST of MELO3C028371 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 43/50 (86.00%), Postives = 43/50 (86.00%), Query Frame = 0

Query: 2    RERMPRTQFSRPGVKSGPPTVSSLCFVLVISLSIFRARASRTSTHTPGML 52
            R RMPRTQFSRPG KSGPPTVSSLC VLVISLSIF AR  RTSTHT GML
Sbjct: 1368 RARMPRTQFSRPGAKSGPPTVSSLCSVLVISLSIFGARTLRTSTHTSGML 1417

BLAST of MELO3C028371 vs. NCBI nr
Match: KAA0037172.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13901.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 4.2e-13
Identity = 42/50 (84.00%), Postives = 42/50 (84.00%), Query Frame = 0

Query: 2  RERMPRTQFSRPGVKSGPPTVSSLCFVLVISLSIFRARASRTSTHTPGML 52
          R RMP TQFSRPGVKS PPTVSSLCFVL ISLSIF A   RTSTHTPGML
Sbjct: 39 RARMPLTQFSRPGVKSDPPTVSSLCFVLAISLSIFEACTLRTSTHTPGML 88

BLAST of MELO3C028371 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 3.9e-11
Identity = 39/50 (78.00%), Postives = 41/50 (82.00%), Query Frame = 0

Query: 2   RERMPRTQFSRPGVKSGPPTVSSLCFVLVISLSIFRARASRTSTHTPGML 52
           R RMP+TQFSRPG KS PPTVS+LC VLV SLSIF A   RTSTHTPGML
Sbjct: 295 RARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGML 344

BLAST of MELO3C028371 vs. NCBI nr
Match: KAA0059489.1 (ribosomal protein L5 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 6.7e-11
Identity = 39/47 (82.98%), Postives = 39/47 (82.98%), Query Frame = 0

Query: 5  MPRTQFSRPGVKSGPPTVSSLCFVLVISLSIFRARASRTSTHTPGML 52
          MPRTQFS P VKSG PTVSSLC V VISLSIF ARAS TS HTPGML
Sbjct: 1  MPRTQFSHPRVKSGSPTVSSLCSVFVISLSIFGARASSTSVHTPGML 47

BLAST of MELO3C028371 vs. NCBI nr
Match: TYK23423.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 9.7e-10
Identity = 37/50 (74.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 2  RERMPRTQFSRPGVKSGPPTVSSLCFVLVISLSIFRARASRTSTHTPGML 52
          R RMP+T  S PG KS PP VSSLCFVLVISLSIF AR  R STHT GML
Sbjct: 39 RARMPQTLVSHPGAKSRPPMVSSLCFVLVISLSIFGARTPRNSTHTSGML 88

BLAST of MELO3C028371 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.0e-14
Identity = 43/50 (86.00%), Postives = 43/50 (86.00%), Query Frame = 0

Query: 2    RERMPRTQFSRPGVKSGPPTVSSLCFVLVISLSIFRARASRTSTHTPGML 52
            R RMPRTQFSRPG KSGPPTVSSLC VLVISLSIF AR  RTSTHT GML
Sbjct: 1368 RARMPRTQFSRPGAKSGPPTVSSLCSVLVISLSIFGARTLRTSTHTSGML 1417

BLAST of MELO3C028371 vs. ExPASy TrEMBL
Match: A0A5D3CQ36 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00910 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-13
Identity = 42/50 (84.00%), Postives = 42/50 (84.00%), Query Frame = 0

Query: 2  RERMPRTQFSRPGVKSGPPTVSSLCFVLVISLSIFRARASRTSTHTPGML 52
          R RMP TQFSRPGVKS PPTVSSLCFVL ISLSIF A   RTSTHTPGML
Sbjct: 39 RARMPLTQFSRPGVKSDPPTVSSLCFVLAISLSIFEACTLRTSTHTPGML 88

BLAST of MELO3C028371 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-11
Identity = 39/50 (78.00%), Postives = 41/50 (82.00%), Query Frame = 0

Query: 2   RERMPRTQFSRPGVKSGPPTVSSLCFVLVISLSIFRARASRTSTHTPGML 52
           R RMP+TQFSRPG KS PPTVS+LC VLV SLSIF A   RTSTHTPGML
Sbjct: 295 RARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGML 344

BLAST of MELO3C028371 vs. ExPASy TrEMBL
Match: A0A5A7V129 (Ribosomal protein L5 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G002350 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.3e-11
Identity = 39/47 (82.98%), Postives = 39/47 (82.98%), Query Frame = 0

Query: 5  MPRTQFSRPGVKSGPPTVSSLCFVLVISLSIFRARASRTSTHTPGML 52
          MPRTQFS P VKSG PTVSSLC V VISLSIF ARAS TS HTPGML
Sbjct: 1  MPRTQFSHPRVKSGSPTVSSLCSVFVISLSIFGARASSTSVHTPGML 47

BLAST of MELO3C028371 vs. ExPASy TrEMBL
Match: A0A5D3DIK9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00040 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.7e-10
Identity = 37/50 (74.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 2  RERMPRTQFSRPGVKSGPPTVSSLCFVLVISLSIFRARASRTSTHTPGML 52
          R RMP+T  S PG KS PP VSSLCFVLVISLSIF AR  R STHT GML
Sbjct: 39 RARMPQTLVSHPGAKSRPPMVSSLCFVLVISLSIFGARTPRNSTHTSGML 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0062888.11.4e-1386.00non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... [more]
KAA0037172.14.2e-1384.00putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13901.1 putative nucleas... [more]
TYK22521.13.9e-1178.00uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa][more]
KAA0059489.16.7e-1182.98ribosomal protein L5 [Cucumis melo var. makuwa][more]
TYK23423.19.7e-1074.00DUF4283 domain-containing protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V5J27.0e-1486.00Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... [more]
A0A5D3CQ362.0e-1384.00Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3DFP21.9e-1178.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V1293.3e-1182.98Ribosomal protein L5 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DIK94.7e-1074.00DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028371.1MELO3C028371.1mRNA