MELO3C028355 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028355
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	ULP_PROTEASE domain-containing protein
Location	chr04: 9146825 .. 9146994 (-)
RNA-Seq Expression	MELO3C028355
Synteny	MELO3C028355

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGACGACAAGTACCTTCGACAAGACGGCTGCACGAGAAAGCCTTCGACGGCTGCCGCTTCGACACAGTACCTTCGACGGCCGTAGCTTCGACACAGTACCTTCGACGGCGGCACGATTCGACGACAGCAACTTCGACGATGACCACCGCCTCGCGCCATTCATCCCGTC

mRNA sequence

TCGACGACAAGTACCTTCGACAAGACGGCTGCACGAGAAAGCCTTCGACGGCTGCCGCTTCGACACAGTACCTTCGACGGCCGTAGCTTCGACACAGTACCTTCGACGGCGGCACGATTCGACGACAGCAACTTCGACGATGACCACCGCCTCGCGCCATTCATCCCGTC

Coding sequence (CDS)

TCGACGACAAGTACCTTCGACAAGACGGCTGCACGAGAAAGCCTTCGACGGCTGCCGCTTCGACACAGTACCTTCGACGGCCGTAGCTTCGACACAGTACCTTCGACGGCGGCACGATTCGACGACAGCAACTTCGACGATGACCACCGCCTCGCGCCATTCATCCCG

Protein sequence

STTSTFDKTAARESLRRLPLRHSTFDGRSFDTVPSTAARFDDSNFDDDHRLAPFIP

Homology

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BLAST of MELO3C028355 vs. NCBI nr
Match: KAA0037667.1 (uncharacterized protein E6C27_scaffold277G003340 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 7.1e-14
Identity = 45/57 (78.95%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 9   TAARESLRRLPLRHSTFDG---------RSFDTVPSTAARFDDSNFDDDHRLAPFIP 57
           TAARESLRRLPLR STFDG         RSFDTVPSTAARFDD++FDDDHRLAPFIP
Sbjct: 86  TAARESLRRLPLRQSTFDGVASTQYIRRRSFDTVPSTAARFDDNSFDDDHRLAPFIP 142

[Close]

BLAST of MELO3C028355 vs. NCBI nr
Match: KAA0052351.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 7.1e-14
Identity = 47/65 (72.31%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 4   STFDK---TAARESLRRLPLRHSTFDG---------RSFDTVPSTAARFDDSNFDDDHRL 57
           ++FD+   TAARESLRRLPLR STFDG         RSFDTVPSTAARFDD++FDDDHRL
Sbjct: 429 NSFDEKPSTAARESLRRLPLRQSTFDGVASTQYIRRRSFDTVPSTAARFDDNSFDDDHRL 488

[Close]

BLAST of MELO3C028355 vs. NCBI nr
Match: KAA0049744.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 35/50 (70.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 12  RESLRRLPLRHSTFDGRSFDTVP-----STAARFDDSNFDDDHRLAPFIP 57
           RE LRR  L    FDG  FDTVP     STAARFDDS+FDDDHRLAPFIP
Sbjct: 53  RERLRR--LHEKAFDGCRFDTVPSTAVASTAARFDDSSFDDDHRLAPFIP 100

[Close]

BLAST of MELO3C028355 vs. NCBI nr
Match: TYK27141.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 28  RSFDTVPSTAARFDDSNFDDDHRLAPFIP 57
           RSFDTVPSTAARFDDS+FDDDHRLAPFIP
Sbjct: 514 RSFDTVPSTAARFDDSSFDDDHRLAPFIP 542

[Close]

BLAST of MELO3C028355 vs. ExPASy TrEMBL
Match: A0A5A7UFQ0 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001920 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 47/65 (72.31%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 4   STFDK---TAARESLRRLPLRHSTFDG---------RSFDTVPSTAARFDDSNFDDDHRL 57
           ++FD+   TAARESLRRLPLR STFDG         RSFDTVPSTAARFDD++FDDDHRL
Sbjct: 429 NSFDEKPSTAARESLRRLPLRQSTFDGVASTQYIRRRSFDTVPSTAARFDDNSFDDDHRL 488

[Close]

BLAST of MELO3C028355 vs. ExPASy TrEMBL
Match: A0A5A7T7Y0 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G003340 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 45/57 (78.95%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 9   TAARESLRRLPLRHSTFDG---------RSFDTVPSTAARFDDSNFDDDHRLAPFIP 57
           TAARESLRRLPLR STFDG         RSFDTVPSTAARFDD++FDDDHRLAPFIP
Sbjct: 86  TAARESLRRLPLRQSTFDGVASTQYIRRRSFDTVPSTAARFDDNSFDDDHRLAPFIP 142

[Close]

BLAST of MELO3C028355 vs. ExPASy TrEMBL
Match: A0A5A7U3B1 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00930 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.3e-07
Identity = 35/50 (70.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 12  RESLRRLPLRHSTFDGRSFDTVP-----STAARFDDSNFDDDHRLAPFIP 57
           RE LRR  L    FDG  FDTVP     STAARFDDS+FDDDHRLAPFIP
Sbjct: 53  RERLRR--LHEKAFDGCRFDTVPSTAVASTAARFDDSSFDDDHRLAPFIP 100

[Close]

BLAST of MELO3C028355 vs. ExPASy TrEMBL
Match: A0A5D3DTY5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1920G00180 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.0e-07
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 28  RSFDTVPSTAARFDDSNFDDDHRLAPFIP 57
           RSFDTVPSTAARFDDS+FDDDHRLAPFIP
Sbjct: 514 RSFDTVPSTAARFDDSSFDDDHRLAPFIP 542

The following BLAST results are available for this feature:

BLAST of MELO3C028355 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037667.1	7.1e-14	78.95	uncharacterized protein E6C27_scaffold277G003340 [Cucumis melo var. makuwa]	[more]
KAA0052351.1	7.1e-14	72.31	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0049744.1	1.1e-06	70.00	transposase [Cucumis melo var. makuwa]	[more]
TYK27141.1	1.4e-06	96.55	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C028355 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028355 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UFQ0	3.5e-14	72.31	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5A7T7Y0	3.5e-14	78.95	ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5A7U3B1	5.3e-07	70.00	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00930 PE=...	[more]
A0A5D3DTY5	7.0e-07	96.55	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19...	[more]

BLAST of MELO3C028355 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028355.1	MELO3C028355.1	mRNA