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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. GAAAACACGAGCGAGAATGCCCCGGACTCAGTTTTTTCGTCCTGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTCCGACGGTCAT mRNA sequence GAAAACACGAGCGAGAATGCCCCGGACTCAGTTTTTTCGTCCTGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTCCGACGGTCAT Coding sequence (CDS) ATGCCCCGGACTCAGTTTTTTCGTCCTGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTCCGACGGTCAT Protein sequence MPRTQFFRPGVKSGPPTVSSLCSVLVISLSISDGH
Homology
BLAST of MELO3C028322 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 59.3 bits (142), Expect = 7.6e-06 Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0 Query: 1 MPRTQFFRPGVKSGPPTVSSLCSVLVISLSI 32 MPRTQF RPG KSGPPTVSSLCSVLVISLSI Sbjct: 1371 MPRTQFSRPGAKSGPPTVSSLCSVLVISLSI 1401
BLAST of MELO3C028322 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 3.7e-06 Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0 Query: 1 MPRTQFFRPGVKSGPPTVSSLCSVLVISLSI 32 MPRTQF RPG KSGPPTVSSLCSVLVISLSI Sbjct: 1371 MPRTQFSRPGAKSGPPTVSSLCSVLVISLSI 1401
BLAST of MELO3C028322 vs. ExPASy TrEMBL
Match: A0A5D3CQ36 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00910 PE=3 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 7.7e-04 Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 0 Query: 1 MPRTQFFRPGVKSGPPTVSSLCSVLVISLSI 32 MP TQF RPGVKS PPTVSSLC VL ISLSI Sbjct: 42 MPLTQFSRPGVKSDPPTVSSLCFVLAISLSI 72
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0062888.1 | 7.6e-06 | 93.55 | non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V5J2 | 3.7e-06 | 93.55 | Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... | [more] |
A0A5D3CQ36 | 7.7e-04 | 83.87 | Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
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