Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCTCTGTCCACGAACGTCGAAGCGGTTCCGCCGCGGCCTCCATCCATTTCCGATTCGCTTCCATCCCCCGGCAGCCGATATCTCTCCCTCTTCCTCCGTTTCTGTCACCGTCGACGGCTCCACTTCAATCGGTGTTCCCGACGCAGCACTGAACGCCGAGGAGAGCCACCCACGTCCGCCGTCGACGTCTCTCACTCGAGCGTTGTCGGGCGGAGCAAAAAAACCA G mRNA sequence
CCCCTCTGTCCACGAACGTCGAAGCGGTTCCGCCGCGGCCTCCATCCATTTCCGATTCGCTTCCATCCCCCGGCAGCCGATATCTCTCCCTCTTCCTCCGTTTCTGTCACCGTCGACGGCTCCACTTCAATCGGTGTTCCCGACGCAGCACTGAACGCCGAGGAGAGCCACCCACGTCCGCCGTCGACGTCTCTCACTCGAGCGTTGTCGGGCGGAGCAAAAAAACCAG Coding sequence (CDS)
CCCCTCTGTCCACGAACGTCGAAGCGGTTCCGCCGCGGCCTCCATCCATTTCCGATTCGCTTCCATCCCCCGGCAGCCGATATCTCTCCCTCTTCCTCCGTTTCTGTCACCGTCGACGGCTCCACTTCAATCGGTGTTCCCGACGCAGCACTGAACGCCGAGGAGAGCCACCCACGTCCGCCGTCGACGTCTCTCACTCGAGCGTTGTCGGGCGGAGCAAAAAAACCA Protein sequence
PLCPRTSKRFRRGLHPFPIRFHPPAADISPSSSVSVTVDGSTSIGVPDAALNAEESHPRPPSTSLTRALSGGAKKP
Homology
BLAST of MELO3C028246 vs. NCBI nr
Match:
KAA0052815.1 (uncharacterized protein E6C27_scaffold773G00060 [Cucumis melo var. makuwa])
HSP 1 Score: 88.2 bits (217), Expect = 3.3e-14
Identity = 50/63 (79.37%), Postives = 50/63 (79.37%), Query Frame = 0
Query: 11 RRGLHPFPIRFHPPAADISPSSSVSVTVDGSTSIGVPDAALNAEESHPRPPSTSLTRALS 70 RRGLHPFP R PPAA IS SSSVSVTVDG TSIGVPDAALNAEESHPR ST LT S Sbjct: 106 RRGLHPFPFRPQPPAAVISSSSSVSVTVDGFTSIGVPDAALNAEESHPR--STELTLKFS 165 Query: 71 GGA 74 G A Sbjct: 166 GSA 166
BLAST of MELO3C028246 vs. ExPASy TrEMBL
Match:
A0A5A7UGE9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold773G00060 PE=4 SV=1)
HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14
Identity = 50/63 (79.37%), Postives = 50/63 (79.37%), Query Frame = 0
Query: 11 RRGLHPFPIRFHPPAADISPSSSVSVTVDGSTSIGVPDAALNAEESHPRPPSTSLTRALS 70 RRGLHPFP R PPAA IS SSSVSVTVDG TSIGVPDAALNAEESHPR ST LT S Sbjct: 106 RRGLHPFPFRPQPPAAVISSSSSVSVTVDGFTSIGVPDAALNAEESHPR--STELTLKFS 165 Query: 71 GGA 74 G A Sbjct: 166 GSA 166
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAA0052815.1 3.3e-14 79.37 uncharacterized protein E6C27_scaffold773G00060 [Cucumis melo var. makuwa] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5A7UGE9 1.6e-14 79.37 Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
C C C C T C T G T C C A C G A A C G T C G A A G C G G T T C C G C C G C G G C C T C C A T C C A T T T C C G A T T C G C T T C C A T C C C C C G G C A G C C G A T A T C T C T C C C T C T T C C T C C G T T T C T G T C A C C G T C G A C G G C T C C A C T T C A A T C G G T G T T C C C G A C G C A G C A C T G A A C G C C G A G G A G A G C C A C C C A C G T C C G C C G T C G A C G T C T C T C A C T C G A G C G T T G T C G G G C G G A G C A A A A A A A C C A G 20 40 60 80 100 120 140 160 180 200 220 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 39..76
Relationships
The following mRNA feature(s) are a part of this gene: