Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon five_prime_UTR CDS polypeptide three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
G GGTCTCGGGTCGGGTCAGCTTGGAACCGGGGCGACCTCAACGACAACTTCGGCGTTCGACGACGGGGTGAGTCGCGGTTGGGTGGAATCCGACGACTCGCTCTGTTCTCAAGCGGCGGAGGACGACGGCTTGACGACGGACACGGTCGGACGATTTGAAGCCGAGAGGAGATCCGAAATGGCAGGGAGGCCGCGGCGGACAGGTTCGACGACGTGGAAGAGACGGGGACGTGCGCGACGGAAGGAAAAGGGAGAGAACGACGGGCGGCGACGTTGA ACGGAGAGAAGATGGCGAACGGCGGCGCTGAACGGAAAGGAGAGAGA mRNA sequence
GGGTCTCGGGTCGGGTCAGCTTGGAACCGGGGCGACCTCAACGACAACTTCGGCGTTCGACGACGGGGTGAGTCGCGGTTGGGTGGAATCCGACGACTCGCTCTGTTCTCAAGCGGCGGAGGACGACGGCTTGACGACGGACACGGTCGGACGATTTGAAGCCGAGAGGAGATCCGAAATGGCAGGGAGGCCGCGGCGGACAGGTTCGACGACGTGGAAGAGACGGGGACGTGCGCGACGGAAGGAAAAGGGAGAGAACGACGGGCGGCGACGTTGAACGGAGAGAAGATGGCGAACGGCGGCGCTGAACGGAAAGGAGAGAGA Coding sequence (CDS)
GGTCTCGGGTCGGGTCAGCTTGGAACCGGGGCGACCTCAACGACAACTTCGGCGTTCGACGACGGGGTGAGTCGCGGTTGGGTGGAATCCGACGACTCGCTCTGTTCTCAAGCGGCGGAGGACGACGGCTTGACGACGGACACGGTCGGACGATTTGAAGCCGAGAGGAGATCCGAAATGGCAGGGAGGCCGCGGCGGACAGGTTCGACGACGTGGAAGAGACGGGGACGTGCGCGACGGAAGGAAAAGGGAGAGAACGACGGGCGGCGACGTTGA Protein sequence
GLGSGQLGTGATSTTTSAFDDGVSRGWVESDDSLCSQAAEDDGLTTDTVGRFEAERRSEMAGRPRRTGSTTWKRRGRARRKEKGENDGRRR
Homology
BLAST of MELO3C028233 vs. NCBI nr
Match:
KAA0063710.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])
HSP 1 Score: 69.3 bits (168), Expect = 1.9e-08
Identity = 37/59 (62.71%), Postives = 41/59 (69.49%), Query Frame = 0
Query: 4 SGQLGTGATSTTTSAFDDGVSRGWVESDDSLCSQAAEDDGLTTDTVGRFEAERRSEMAG 63 SG+L G + + G+ RGWVESDD C AAEDDGLT DTVGRFEAERRSEM G Sbjct: 85 SGRLENGNLNDSFGRSTTGMCRGWVESDDRFCFHAAEDDGLTADTVGRFEAERRSEMDG 143
BLAST of MELO3C028233 vs. ExPASy TrEMBL
Match:
A0A5A7V944 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002330 PE=4 SV=1)
HSP 1 Score: 69.3 bits (168), Expect = 9.3e-09
Identity = 37/59 (62.71%), Postives = 41/59 (69.49%), Query Frame = 0
Query: 4 SGQLGTGATSTTTSAFDDGVSRGWVESDDSLCSQAAEDDGLTTDTVGRFEAERRSEMAG 63 SG+L G + + G+ RGWVESDD C AAEDDGLT DTVGRFEAERRSEM G Sbjct: 85 SGRLENGNLNDSFGRSTTGMCRGWVESDDRFCFHAAEDDGLTADTVGRFEAERRSEMDG 143
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAA0063710.1 1.9e-08 62.71 NBS-LRR type resistance protein [Cucumis melo var. makuwa] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5A7V944 9.3e-09 62.71 NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
G G G T C T C G G G T C G G G T C A G C T T G G A A C C G G G G C G A C C T C A A C G A C A A C T T C G G C G T T C G A C G A C G G G G T G A G T C G C G G T T G G G T G G A A T C C G A C G A C T C G C T C T G T T C T C A A G C G G C G G A G G A C G A C G G C T T G A C G A C G G A C A C G G T C G G A C G A T T T G A A G C C G A G A G G A G A T C C G A A A T G G C A G G G A G G C C G C G G C G G A C A G G T T C G A C G A C G T G G A A G A G A C G G G G A C G T G C G C G A C G G A A G G A A A A G G G A G A G A A C G A C G G G C G G C G A C G T T G A A C G G A G A G A A G A T G G C G A A C G G C G G C G C T G A A C G G A A A G G A G A G A G A 50 100 150 200 250 300 Score = Score = Score = Sequence mobidb-lite mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 46..63
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..21
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..91
Relationships
The following mRNA feature(s) are a part of this gene: