MELO3C028149 (gene) Melon (DHL92) v4

Overview
NameMELO3C028149
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRibosomal protein s12
Locationchr02: 23080682 .. 23080971 (+)
RNA-Seq ExpressionMELO3C028149
SyntenyMELO3C028149
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGAGTTATATCCCTTCCCTTGCCCCCATCGAGAAATAGAACTGACTAATCCTAAGGCAAAGGGTCGAGAAACTCAACGCCACTATTCTTGA

mRNA sequence

ATGCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGAGTTATATCCCTTCCCTTGCCCCCATCGAGAAATAGAACTGACTAATCCTAAGGCAAAGGGTCGAGAAACTCAACGCCACTATTCTTGA

Coding sequence (CDS)

GCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGAGTTATATCCCTTCCCTTGCCCCCATCGAGAAATAGAACTGACTAATCCTAAGGCAAAGGGTCGAGAAACTCAACGCCACTATTCTTGA

Protein sequence

ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSATSRRHSTAELYPFPCPHREIELTNPKAKGRETQRHYS
Homology
[Close]
BLAST of MELO3C028149 vs. NCBI nr
Match: KAF4359988.1 (hypothetical protein F8388_004495 [Cannabis sativa])

HSP 1 Score: 117.9 bits (294), Expect = 4.9e-23
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSATS 60
          ALHIRLEFAPRNIAIPTPSRQSH+PLIHSHSITAGEQVKIEKLTLGLGIIRLELMTS TS
Sbjct: 34 ALHIRLEFAPRNIAIPTPSRQSHKPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSTTS 93

Query: 61 R 62
          R
Sbjct: 94 R 94

[Close]
BLAST of MELO3C028149 vs. NCBI nr
Match: ERM97518.1 (hypothetical protein AMTR_s05231p00006790, partial [Amborella trichopoda])

HSP 1 Score: 117.5 bits (293), Expect = 6.4e-23
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0 

Query: 1  ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSATS 60
          ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTS TS
Sbjct: 18 ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSTTS 77

[Close]
BLAST of MELO3C028149 vs. NCBI nr
Match: KAG9438526.1 (hypothetical protein H6P81_021526 [Aristolochia fimbriata])

HSP 1 Score: 111.7 bits (278), Expect = 3.5e-21
Identity = 60/74 (81.08%), Postives = 61/74 (82.43%), Query Frame = 0 

Query: 1   ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSATS 60
           ALHI LEFAP NIAIPT SRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTS TS
Sbjct: 182 ALHISLEFAPSNIAIPTLSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSTTS 241

Query: 61  RRHSTAELYPFPCP 75
           R  S    +  P P
Sbjct: 242 RLTSLLLSWYNPIP 255

[Close]
BLAST of MELO3C028149 vs. NCBI nr
Match: KAF4360038.1 (hypothetical protein G4B88_025799, partial [Cannabis sativa])

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-19
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 8   FAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSATSRR 63
           FAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTS TSR+
Sbjct: 50  FAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSTTSRQ 104

[Close]
BLAST of MELO3C028149 vs. NCBI nr
Match: TYJ97094.1 (hypothetical protein E5676_scaffold23G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 8.1e-18
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 0 

Query: 1   ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSAT 60
           A H+RL+FAPR+IAIPTPSRQSHEPLIHSHSI   EQVKIEKLTLGL IIRLELM SAT
Sbjct: 120 AFHVRLDFAPRDIAIPTPSRQSHEPLIHSHSIMTEEQVKIEKLTLGLEIIRLELMNSAT 178

[Close]
BLAST of MELO3C028149 vs. ExPASy TrEMBL
Match: A0A7J6ENJ8 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_004495 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.4e-23
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSATS 60
          ALHIRLEFAPRNIAIPTPSRQSH+PLIHSHSITAGEQVKIEKLTLGLGIIRLELMTS TS
Sbjct: 34 ALHIRLEFAPRNIAIPTPSRQSHKPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSTTS 93

Query: 61 R 62
          R
Sbjct: 94 R 94

[Close]
BLAST of MELO3C028149 vs. ExPASy TrEMBL
Match: U5CXB4 (Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s05231p00006790 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.1e-23
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0 

Query: 1  ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSATS 60
          ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTS TS
Sbjct: 18 ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSTTS 77

[Close]
BLAST of MELO3C028149 vs. ExPASy TrEMBL
Match: A0A6N2KRR2 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS86348 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.3e-23
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0 

Query: 1   ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITA-GEQVKIEKLTLGLGIIRLELMTSAT 60
           ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITA GEQVKIEKLTLGLGIIRLELMTS T
Sbjct: 247 ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAEGEQVKIEKLTLGLGIIRLELMTSTT 306

Query: 61  SRRHSTA 67
           SR+  T+
Sbjct: 307 SRQRFTS 313

[Close]
BLAST of MELO3C028149 vs. ExPASy TrEMBL
Match: A0A6N2K9N9 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS53288 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.3e-23
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0 

Query: 1   ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITA-GEQVKIEKLTLGLGIIRLELMTSAT 60
           ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITA GEQVKIEKLTLGLGIIRLELMTS T
Sbjct: 256 ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAEGEQVKIEKLTLGLGIIRLELMTSTT 315

Query: 61  SRRHSTA 67
           SR+  T+
Sbjct: 316 SRQRFTS 322

[Close]
BLAST of MELO3C028149 vs. ExPASy TrEMBL
Match: A0A6N2M1J4 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS304386 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.3e-23
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0 

Query: 1   ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITA-GEQVKIEKLTLGLGIIRLELMTSAT 60
           ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITA GEQVKIEKLTLGLGIIRLELMTS T
Sbjct: 111 ALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAEGEQVKIEKLTLGLGIIRLELMTSTT 170

Query: 61  SRRHSTA 67
           SR+  T+
Sbjct: 171 SRQRFTS 177

The following BLAST results are available for this feature:
BLAST of MELO3C028149 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF4359988.14.9e-2396.72hypothetical protein F8388_004495 [Cannabis sativa][more]
ERM97518.16.4e-2398.33hypothetical protein AMTR_s05231p00006790, partial [Amborella trichopoda][more]
KAG9438526.13.5e-2181.08hypothetical protein H6P81_021526 [Aristolochia fimbriata][more]
KAF4360038.11.1e-1996.36hypothetical protein G4B88_025799, partial [Cannabis sativa][more]
TYJ97094.18.1e-1884.75hypothetical protein E5676_scaffold23G00250 [Cucumis melo var. makuwa][more]
BLAST of MELO3C028149 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028149 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J6ENJ82.4e-2396.72Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_004495 PE=4 SV=1[more]
U5CXB43.1e-2398.33Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s052... [more]
A0A6N2KRR25.3e-2391.04Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS86348 PE=3 SV=1[more]
A0A6N2K9N95.3e-2391.04Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS53288 PE=3 SV=1[more]
A0A6N2M1J45.3e-2391.04Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS304386 PE=3 SV=... [more]
BLAST of MELO3C028149 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028149.1MELO3C028149.1mRNA