MELO3C027957 (gene) Melon (DHL92) v4

Overview
NameMELO3C027957
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionNBS-LRR type resistance protein
Locationchr04: 17774232 .. 17774520 (-)
RNA-Seq ExpressionMELO3C027957
SyntenyMELO3C027957
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTGCCCGGTTTCTTTCGTCGACGATGGTAATACGACGGCTGACGCTTTACCACCGAGGCAGAAACGGCCGACGGCTGGCCGTGCACGCGGAACTGAGAAGAAGGGCAGTCGGGGACGGCCGTCGCTGATGCTTCCCGCCGGTGATGTGCGGACACAGAAATGGACGGTCGACGAAGGCGTGCGGCGACGTCTGTGTTCGCCGGATGAAGAAGCCGAAGAGAAGAAGACGAAGGAGAAGGGAGGACTGGCGACGTCGGGCGAGGAAGGGAGAGGAAGAAGAAGAA

mRNA sequence

ATGGTTTGCCCGGTTTCTTTCGTCGACGATGGTAATACGACGGCTGACGCTTTACCACCGAGGCAGAAACGGCCGACGGCTGGCCGTGCACGCGGAACTGAGAAGAAGGGCAGTCGGGGACGGCCGTCGCTGATGCTTCCCGCCGGTGATGTGCGGACACAGAAATGGACGGTCGACGAAGGCGTGCGGCGACGTCTGTGTTCGCCGGATGAAGAAGCCGAAGAGAAGAAGACGAAGGAGAAGGGAGGACTGGCGACGTCGGGCGAGGAAGGGAGAGGAAGAAGAAGAA

Coding sequence (CDS)

ATGGTTTGCCCGGTTTCTTTCGTCGACGATGGTAATACGACGGCTGACGCTTTACCACCGAGGCAGAAACGGCCGACGGCTGGCCGTGCACGCGGAACTGAGAAGAAGGGCAGTCGGGGACGGCCGTCGCTGATGCTTCCCGCCGGTGATGTGCGGACACAGAAATGGACGGTCGACGAAGGCGTGCGGCGACGTCTGTGTTCGCCGGATGAAGAAGCCGAAGAGAAGAAGACGAAGGAGAAGGGAGGACTGGCGACGTCGGGCGAGGAAGGGAGAGGAAGAAGAAGA

Protein sequence

MVCPVSFVDDGNTTADALPPRQKRPTAGRARGTEKKGSRGRPSLMLPAGDVRTQKWTVDEGVRRRLCSPDEEAEEKKTKEKGGLATSGEEGRGRRR
Homology
[Close]
BLAST of MELO3C027957 vs. NCBI nr
Match: KAA0067956.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 1   MVCPVSFVDDGNTTADALPPRQKRPTAGRARGTEKKGSRGRPSL 45
           M CPV++VD  NTTADA+PPRQKRP AGRARGT+KK  RGR SL
Sbjct: 90  MACPVTYVDASNTTADAVPPRQKRPMAGRARGTQKKNGRGRLSL 133

[Close]
BLAST of MELO3C027957 vs. NCBI nr
Match: KAA0046516.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 8.8e-04
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 2  VCPVSFVDDGNTTADALPPRQKRPTAGRARGTEKK 37
          VCPV++VD   TTADA+ PRQ+RP AGRARGT+KK
Sbjct: 5  VCPVTYVDARYTTADAVQPRQRRPMAGRARGTQKK 39

[Close]
BLAST of MELO3C027957 vs. ExPASy TrEMBL
Match: A0A5A7VN13 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001400 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.7e-09
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 1   MVCPVSFVDDGNTTADALPPRQKRPTAGRARGTEKKGSRGRPSL 45
           M CPV++VD  NTTADA+PPRQKRP AGRARGT+KK  RGR SL
Sbjct: 90  MACPVTYVDASNTTADAVPPRQKRPMAGRARGTQKKNGRGRLSL 133

[Close]
BLAST of MELO3C027957 vs. ExPASy TrEMBL
Match: A0A5A7TX05 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00150 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.3e-04
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 2  VCPVSFVDDGNTTADALPPRQKRPTAGRARGTEKK 37
          VCPV++VD   TTADA+ PRQ+RP AGRARGT+KK
Sbjct: 5  VCPVTYVDARYTTADAVQPRQRRPMAGRARGTQKK 39

The following BLAST results are available for this feature:
BLAST of MELO3C027957 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0067956.11.2e-0875.00NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0046516.18.8e-0471.43gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C027957 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C027957 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VN135.7e-0975.00NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7TX054.3e-0471.43Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G0015... [more]
BLAST of MELO3C027957 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027957.1MELO3C027957.1mRNA