MELO3C027942 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027942
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	U4/U6 small nuclear ribonucleoprotein Prp3
Location	chr05: 16800763 .. 16800942 (+)
RNA-Seq Expression	MELO3C027942
Synteny	MELO3C027942

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGGTGGTAGGGCAAGGAGGGACCGAAAGCGGTTTGAGGATCAAGTGAAGGAAGAAGATAATGGTGGAAATGTTGATGAGAAGCATGCGAAAGTGATTGAATACAAGTCCAAAGGAGACGTGGAGGATGGAAAAGTTCAGTTTGGAGGCACCACTGATGAAAAAAGGTCACTGGGGAAT

mRNA sequence

TTGGGTGGTAGGGCAAGGAGGGACCGAAAGCGGTTTGAGGATCAAGTGAAGGAAGAAGATAATGGTGGAAATGTTGATGAGAAGCATGCGAAAGTGATTGAATACAAGTCCAAAGGAGACGTGGAGGATGGAAAAGTTCAGTTTGGAGGCACCACTGATGAAAAAAGGTCACTGGGGAAT

Coding sequence (CDS)

TTGGGTGGTAGGGCAAGGAGGGACCGAAAGCGGTTTGAGGATCAAGTGAAGGAAGAAGATAATGGTGGAAATGTTGATGAGAAGCATGCGAAAGTGATTGAATACAAGTCCAAAGGAGACGTGGAGGATGGAAAAGTTCAGTTTGGAGGCACCACTGATGAAAAAAGGTCACTGGGGAAT

Protein sequence

LGGRARRDRKRFEDQVKEEDNGGNVDEKHAKVIEYKSKGDVEDGKVQFGGTTDEKRSLGN

Homology

[Close]

BLAST of MELO3C027942 vs. NCBI nr
Match: KAA0046233.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 4.0e-23
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  LGGRARRDRKRFEDQVKEEDNGGNVDEKHAKVIEYKSKGDVEDGKVQFGGTTDEKRSLGN 60
          LGGRARRDRKRFEDQVKEEDNGGNVDEKHAKV+EYKSKGDVEDGKVQFGGTTDEKRSLGN
Sbjct: 8  LGGRARRDRKRFEDQVKEEDNGGNVDEKHAKVMEYKSKGDVEDGKVQFGGTTDEKRSLGN 67

[Close]

BLAST of MELO3C027942 vs. NCBI nr
Match: KAA0025992.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 5.3e-23
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1   LGGRARRDRKRFEDQVKEEDNGGNVDEKHAKVIEYKSKGDVEDGKVQFGGTTDEKRSLGN 60
           LGGRARRDRKRFED+VKEEDNGGNVDEKHAKVIEYKSKGDVEDGKVQFGGTTDEKRSLGN
Sbjct: 192 LGGRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVEDGKVQFGGTTDEKRSLGN 251

[Close]

BLAST of MELO3C027942 vs. NCBI nr
Match: KAA0047368.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 3.4e-22
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   LGGRARRDRKRFEDQVKEEDNGGNVDEKHAKVIEYKSKGDVEDGKVQFGGTTDEKRSLGN 60
           LGGRARRDRKRFED+VKEEDNGGNVDEKHAKVIEYKSKGDV DGKVQFGGTTDEKRSLGN
Sbjct: 46  LGGRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 105

[Close]

BLAST of MELO3C027942 vs. NCBI nr
Match: TYK00660.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   LGGRARRDRKRFEDQVKEEDNGGNVDEKHAKVIEYKSKGDVEDGKVQFGGTTDEKRSLGN 60
           LGGRARRDRKRFE++VKEEDNGGNVDEKHAKVIEYKSKGDV DGKVQFGGTTDEKRSLGN
Sbjct: 60  LGGRARRDRKRFENRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 119

[Close]

BLAST of MELO3C027942 vs. NCBI nr
Match: XP_008461606.1 (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo] >KAA0034019.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 1.7e-21
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 1   LGGRARRDRKRFEDQVKEEDNGGNVDEKHAKVIEYKSKGDVEDGKVQFGGTTDEKRSLGN 60
           L GRARRDRKRFED+VKEEDNGGNVDEKHAKVIEYKSKGDV DGKVQFGGTTDEKRSLGN
Sbjct: 211 LSGRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 270

[Close]

BLAST of MELO3C027942 vs. ExPASy TrEMBL
Match: A0A5A7TRN5 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00290 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  LGGRARRDRKRFEDQVKEEDNGGNVDEKHAKVIEYKSKGDVEDGKVQFGGTTDEKRSLGN 60
          LGGRARRDRKRFEDQVKEEDNGGNVDEKHAKV+EYKSKGDVEDGKVQFGGTTDEKRSLGN
Sbjct: 8  LGGRARRDRKRFEDQVKEEDNGGNVDEKHAKVMEYKSKGDVEDGKVQFGGTTDEKRSLGN 67

[Close]

BLAST of MELO3C027942 vs. ExPASy TrEMBL
Match: A0A5A7SLH4 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003130 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.6e-23
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1   LGGRARRDRKRFEDQVKEEDNGGNVDEKHAKVIEYKSKGDVEDGKVQFGGTTDEKRSLGN 60
           LGGRARRDRKRFED+VKEEDNGGNVDEKHAKVIEYKSKGDVEDGKVQFGGTTDEKRSLGN
Sbjct: 192 LGGRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVEDGKVQFGGTTDEKRSLGN 251

[Close]

BLAST of MELO3C027942 vs. ExPASy TrEMBL
Match: A0A5A7TWT4 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold754G00170 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-22
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   LGGRARRDRKRFEDQVKEEDNGGNVDEKHAKVIEYKSKGDVEDGKVQFGGTTDEKRSLGN 60
           LGGRARRDRKRFED+VKEEDNGGNVDEKHAKVIEYKSKGDV DGKVQFGGTTDEKRSLGN
Sbjct: 46  LGGRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 105

[Close]

BLAST of MELO3C027942 vs. ExPASy TrEMBL
Match: A0A5D3BNR8 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002820 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.3e-22
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   LGGRARRDRKRFEDQVKEEDNGGNVDEKHAKVIEYKSKGDVEDGKVQFGGTTDEKRSLGN 60
           LGGRARRDRKRFE++VKEEDNGGNVDEKHAKVIEYKSKGDV DGKVQFGGTTDEKRSLGN
Sbjct: 60  LGGRARRDRKRFENRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 119

[Close]

BLAST of MELO3C027942 vs. ExPASy TrEMBL
Match: A0A5A7SXX5 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00020 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.2e-22
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 1   LGGRARRDRKRFEDQVKEEDNGGNVDEKHAKVIEYKSKGDVEDGKVQFGGTTDEKRSLGN 60
           L GRARRDRKRFED+VKEEDNGGNVDEKHAKVIEYKSKGDV DGKVQFGGTTDEKRSLGN
Sbjct: 211 LSGRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 270

The following BLAST results are available for this feature:

BLAST of MELO3C027942 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046233.1	4.0e-23	98.33	U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]	[more]
KAA0025992.1	5.3e-23	98.33	U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]	[more]
KAA0047368.1	3.4e-22	96.67	U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]	[more]
TYK00660.1	1.3e-21	95.00	U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]	[more]
XP_008461606.1	1.7e-21	95.00	PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo] >KAA0034019...	[more]

BLAST of MELO3C027942 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C027942 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRN5	2.0e-23	98.33	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5A7SLH4	2.6e-23	98.33	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5A7TWT4	1.7e-22	96.67	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3BNR8	6.3e-22	95.00	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5A7SXX5	8.2e-22	95.00	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of MELO3C027942 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027942.1	MELO3C027942.1	mRNA