MELO3C027927 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027927
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8
Location	chr04: 26229531 .. 26229871 (-)
RNA-Seq Expression	MELO3C027927
Synteny	MELO3C027927

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTACTTTCTGTGAGAACCGACCATACTTTCCCGTTAGCCATCTTCAGGGGGAGAGTGTGAGTGAAAAGTCTAACAACACTTTCGAATTTACTGAACCTACTCCTAGTATGTATCTGACGTTGATCCTCATCCTATAATCTTACCTGCAAACCAAGTTCCTTGGAAAACATACAGGAGGAATCTCATAAAGGAAGTTGGGTCCCCTACTAGTCAACCGCCGGCTCCAGTCCAAGACTTCGAACCTCCTCGAGACCAAGGTATGGAAAACCCTACAGAACCTTGTACTAATAATACGATGAGTGAGAATGACAAGTCTGATGTTGCTGTTCTTGAA

mRNA sequence

ATGGATGTTACTTTCTGTGAGAACCGACCATACTTTCCCGTTAGCCATCTTCAGGGGGAGAGTGTGAGTGAAAAGTCTAACAACACTTTCGAATTTACTGAACCTACTCCTAGTATGTATCTGACGTTGATCCTCATCCTATAATCTTACCTGCAAACCAAGTTCCTTGGAAAACAtacaggaggaatctcataaaggaagttgggtcccctactagtcaaccgccggctccagtccaagacttcgaacctcctcgagaccaaggtatggaaaaccctacagaaccttgtactaataatacgatgagtgagaatgacaagtctgatgttgctgttcttgaa

Coding sequence (CDS)

ATGGATGTTACTTTCTGTGAGAACCGACCATACTTTCCCGTTAGCCATCTTCAGGGGGAGAGTGTGAGTGAAAAGTCTAACAACACTTTCGAATTTACTGAACCTACTCCTAGTATGTATCTGACGTTGATCCTCATCCTATAA

Protein sequence

MDVTFCENRPYFPVSHLQGESVSEKSNNTFEFTEPTPSMYLTLILIL

Homology

[Close]

BLAST of MELO3C027927 vs. NCBI nr
Match: KAA0059989.1 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa] >TYJ97248.1 Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 7.3e-12
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   MDVTFCENRPYFPVSHLQGESVSEKSNNTFEFTEPTPS 39
           MDVTFCENRPYFPVSHLQGESVS++SNNTFEF EPTPS
Sbjct: 615 MDVTFCENRPYFPVSHLQGESVSKESNNTFEFIEPTPS 652

[Close]

BLAST of MELO3C027927 vs. NCBI nr
Match: KAA0036486.1 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa] >TYK00002.1 Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 9.6e-12
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   MDVTFCENRPYFPVSHLQGESVSEKSNNTFEFTEPTPS 39
           MDVTFCENRPYFPVSHLQGESVSE+SN+TFEF EPTPS
Sbjct: 482 MDVTFCENRPYFPVSHLQGESVSEESNSTFEFIEPTPS 519

[Close]

BLAST of MELO3C027927 vs. NCBI nr
Match: KAA0042053.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1   MDVTFCENRPYFPVSHLQGESVSEKSNNTFEFTEPTP 38
           MDVTFCENRPYFPVSHLQGE+VSE+SNNTFEF EPTP
Sbjct: 395 MDVTFCENRPYFPVSHLQGENVSEESNNTFEFVEPTP 431

[Close]

BLAST of MELO3C027927 vs. NCBI nr
Match: KAA0064303.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-11
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 1   MDVTFCENRPYFPVSHLQGESVSEKSNNTFEFTEPTPS 39
           MDVTFCENR YFPVSHLQGESVSEKS NTFEFTEPTPS
Sbjct: 539 MDVTFCENRHYFPVSHLQGESVSEKSYNTFEFTEPTPS 576

[Close]

BLAST of MELO3C027927 vs. NCBI nr
Match: KAA0042083.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK18026.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-11
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   MDVTFCENRPYFPVSHLQGESVSEKSNNTFEFTEPTPS 39
           MDVTFCENRPYFPVSHLQGESVSE+SN+TFEF EPTP+
Sbjct: 333 MDVTFCENRPYFPVSHLQGESVSEESNSTFEFIEPTPN 370

[Close]

BLAST of MELO3C027927 vs. ExPASy TrEMBL
Match: A0A5A7V2E9 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00400 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.5e-12
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   MDVTFCENRPYFPVSHLQGESVSEKSNNTFEFTEPTPS 39
           MDVTFCENRPYFPVSHLQGESVS++SNNTFEF EPTPS
Sbjct: 615 MDVTFCENRPYFPVSHLQGESVSKESNNTFEFIEPTPS 652

[Close]

BLAST of MELO3C027927 vs. ExPASy TrEMBL
Match: A0A5A7T337 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00470 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.6e-12
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   MDVTFCENRPYFPVSHLQGESVSEKSNNTFEFTEPTPS 39
           MDVTFCENRPYFPVSHLQGESVSE+SN+TFEF EPTPS
Sbjct: 482 MDVTFCENRPYFPVSHLQGESVSEESNSTFEFIEPTPS 519

[Close]

BLAST of MELO3C027927 vs. ExPASy TrEMBL
Match: A0A5A7TFR5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005100 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.1e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1   MDVTFCENRPYFPVSHLQGESVSEKSNNTFEFTEPTP 38
           MDVTFCENRPYFPVSHLQGE+VSE+SNNTFEF EPTP
Sbjct: 395 MDVTFCENRPYFPVSHLQGENVSEESNNTFEFVEPTP 431

[Close]

BLAST of MELO3C027927 vs. ExPASy TrEMBL
Match: A0A5A7V851 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00020 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.9e-12
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 1   MDVTFCENRPYFPVSHLQGESVSEKSNNTFEFTEPTPS 39
           MDVTFCENR YFPVSHLQGESVSEKS NTFEFTEPTPS
Sbjct: 539 MDVTFCENRHYFPVSHLQGESVSEKSYNTFEFTEPTPS 576

[Close]

BLAST of MELO3C027927 vs. ExPASy TrEMBL
Match: A0A5A7TFU4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003450 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-11
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   MDVTFCENRPYFPVSHLQGESVSEKSNNTFEFTEPTPS 39
           MDVTFCENRPYFPVSHLQGESVSE+SN+TFEF EPTP+
Sbjct: 333 MDVTFCENRPYFPVSHLQGESVSEESNSTFEFIEPTPN 370

The following BLAST results are available for this feature:

BLAST of MELO3C027927 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059989.1	7.3e-12	92.11	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa] >T...	[more]
KAA0036486.1	9.6e-12	92.11	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa] >T...	[more]
KAA0042053.1	1.2e-11	91.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0064303.1	1.6e-11	94.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0042083.1	2.1e-11	89.47	reverse transcriptase [Cucumis melo var. makuwa] >TYK18026.1 reverse transcripta...	[more]

BLAST of MELO3C027927 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C027927 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V2E9	3.5e-12	92.11	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A5A7T337	4.6e-12	92.11	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A5A7TFR5	6.1e-12	91.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V851	7.9e-12	94.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TFU4	1.0e-11	89.47	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30...	[more]

BLAST of MELO3C027927 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027927.1	MELO3C027927.1	mRNA