Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptide exon CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTGGACGGCCGCACGCTCCCACGAGAAGAACTTCAACGGCTGCAC GTTTCGACGACCGTAGCTTCGACGGCCGCAGGCTTCGACGACCGCAGCTTCGACGGCTGCACGCTTCGACGACAGCAGCTTCGACGACAACCACCGCCTCGCGTCATTCATCGCGTCAATCGGGCTGCGACCATCCACTGTTTCTCGTCTAACGACAACCGC C mRNA sequence
CTTGGACGGCCGCACGCTCCCACGAGAAGAACTTCAACGGCTGCACGCTTCGACGACCGCAGCTTCGACGGCTGCACGCTTCGACGACAGCAGCTTCGACGACAACCACCGCCTCGCGTCATTCATCGCGTCAATCGGGCTGCGACCATCCACTGTTTCTCGTCTAACGACAACCGCC Coding sequence (CDS)
CTTGGACGGCCGCACGCTCCCACGAGAAGAACTTCAACGGCTGCACGCTTCGACGACCGCAGCTTCGACGGCTGCACGCTTCGACGACAGCAGCTTCGACGACAACCACCGCCTCGCGTCATTCATCGCGTCAATCGGGCTGCGACCATCCACTGTTTCTCGTCTAACGACAACCGC Protein sequence
LGRPHAPTRRTSTAARFDDRSFDGCTLRRQQLRRQPPPRVIHRVNRAATIHCFSSNDNR
Homology
BLAST of MELO3C027919 vs. NCBI nr
Match:
KAA0052339.1 (hypothetical protein E6C27_scaffold207G001770 [Cucumis melo var. makuwa])
HSP 1 Score: 83.6 bits (205), Expect = 6.4e-13
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 0
Query: 7 PTRRTSTAARFDDRSFDGCTLRRQQLRRQPPPRVIHRVNRAATIHCFSSNDN 59 P TAA FDD SFDGCTL+R QLRRQPP RVIHRVNRAATIHCF S+DN Sbjct: 21 PREEALTAAGFDDLSFDGCTLQRPQLRRQPPRRVIHRVNRAATIHCFLSDDN 72
BLAST of MELO3C027919 vs. ExPASy TrEMBL
Match:
A0A5A7UFT3 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001770 PE=4 SV=1)
HSP 1 Score: 83.6 bits (205), Expect = 3.1e-13
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 0
Query: 7 PTRRTSTAARFDDRSFDGCTLRRQQLRRQPPPRVIHRVNRAATIHCFSSNDN 59 P TAA FDD SFDGCTL+R QLRRQPP RVIHRVNRAATIHCF S+DN Sbjct: 21 PREEALTAAGFDDLSFDGCTLQRPQLRRQPPRRVIHRVNRAATIHCFLSDDN 72
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAA0052339.1 6.4e-13 76.92 hypothetical protein E6C27_scaffold207G001770 [Cucumis melo var. makuwa] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5A7UFT3 3.1e-13 76.92 DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
C T T G G A C G G C C G C A C G C T C C C A C G A G A A G A A C T T C A A C G G C T G C A C G C T T C G A C G A C C G C A G C T T C G A C G G C T G C A C G C T T C G A C G A C A G C A G C T T C G A C G A C A A C C A C C G C C T C G C G T C A T T C A T C G C G T C A A T C G G G C T G C G A C C A T C C A C T G T T T C T C G T C T A A C G A C A A C C G C C 20 40 60 80 100 120 140 160 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..22
Relationships
The following mRNA feature(s) are a part of this gene: