MELO3C027857 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027857
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Pleiotropic drug resistance transporter 1
Location	chr04: 14729857 .. 14730181 (+)
RNA-Seq Expression	MELO3C027857
Synteny	MELO3C027857

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAATGGATTTGGGAATTGGTGGGTGTTCATTTAGAAGCAATGGAAGTTTTAGATCAATAGTAGTGGATGGATTTTCAAGATCTTCATTACGTGAAGAAGAAGACGATGAAGAAGCACTTAAATGGGCAGCGATTGAGAAGCTTCCAACTTTCAGACGTTTGAGGAAAGGTTTGGTTACAACTGAGAATGGCGAAGCTAATGAAGTTGATATTCTTAAGCTTGGGTTTCAAGATAGGAAGAATTTGATTGAAATGTTACTCCATGTTGCTGAACAAGATAATGAAAAGTTCTTGTTGAAGTTGCAGAATCGTCTTGATAGGTAA

mRNA sequence

AAGAATGGATTTGGGAATTGGTGGGTGTTCATTTAGAAGCAATGATATTCTTAAGCTTGGGTTTCAAGATAGGAAGAATTTGATTGAAATGTTACTCCATGTTGCTGAACAAGATAATGAAAAGTTCTTGTTGAAGTTGCAGAATCGTCTTGATAGGTAA

Coding sequence (CDS)

ATGGATTTGGGAATTGGTGGGTGTTCATTTAGAAGCAATGATATTCTTAAGCTTGGGTTTCAAGATAGGAAGAATTTGATTGAAATGTTACTCCATGTTGCTGAACAAGATAATGAAAAGTTCTTGTTGAAGTTGCAGAATCGTCTTGATAGGTAA

Protein sequence

MDLGIGGCSFRSNDILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR

Homology

[Close]

BLAST of MELO3C027857 vs. NCBI nr
Match: KAA0025760.1 (pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa] >TYJ97608.1 pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-11
Identity = 51/106 (48.11%), Postives = 51/106 (48.11%), Query Frame = 0


Query: 1   MDLGIGGCSFRSN----------------------------------------------- 52
           MDLGIGGCSFRSN                                               
Sbjct: 1   MDLGIGGCSFRSNGSFRSIVVDGFSRSSLREEEDDEEALKWAAIEKLPTFRRLRKGLVTT 60

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BLAST of MELO3C027857 vs. NCBI nr
Match: XP_038878862.1 (LOW QUALITY PROTEIN: pleiotropic drug resistance protein 1-like [Benincasa hispida])

HSP 1 Score: 69.7 bits (169), Expect = 8.2e-09
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 14  DILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR 52
           DIL LGFQDRKNLI+MLL VAEQDNEKFL+KLQNRLDR
Sbjct: 64  DILNLGFQDRKNLIDMLLQVAEQDNEKFLIKLQNRLDR 101

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BLAST of MELO3C027857 vs. NCBI nr
Match: XP_031739292.1 (pleiotropic drug resistance protein 1 [Cucumis sativus] >KAE8650759.1 hypothetical protein Csa_017543 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-08
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 14  DILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR 52
           DILKLGFQDRKNLIEMLL V EQDNEKFL+KLQ+RLDR
Sbjct: 66  DILKLGFQDRKNLIEMLLQVGEQDNEKFLIKLQDRLDR 103

[Close]

BLAST of MELO3C027857 vs. NCBI nr
Match: XP_023524614.1 (pleiotropic drug resistance protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.0 bits (162), Expect = 5.3e-08
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 14  DILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR 52
           DIL LGFQDRKNLIE L+ VAE+DNEKFLLKLQNRLDR
Sbjct: 63  DILNLGFQDRKNLIEALIKVAEEDNEKFLLKLQNRLDR 100

[Close]

BLAST of MELO3C027857 vs. NCBI nr
Match: KAG6606776.1 (Pleiotropic drug resistance protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.0 bits (162), Expect = 5.3e-08
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 14  DILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR 52
           DIL LGFQDRKNLIE L+ VAE+DNEKFLLKLQNRLDR
Sbjct: 63  DILNLGFQDRKNLIEALIKVAEEDNEKFLLKLQNRLDR 100

[Close]

BLAST of MELO3C027857 vs. ExPASy Swiss-Prot
Match: Q76CU2 (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum OX=4097 GN=PDR1 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.2e-08
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 14  DILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR 52
           DI  LGFQ+RKNL+E L+ VA++DNEKFLLKL+NR+DR
Sbjct: 81  DINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDR 118

[Close]

BLAST of MELO3C027857 vs. ExPASy Swiss-Prot
Match: O24367 (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrhiza OX=29656 GN=TUR2 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-07
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 7   GCSFRSNDILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR 52
           G   +  DI  LGFQ+RKNL+E L+  AE+DNE+FLLKL+NR++R
Sbjct: 71  GGEIQEVDIQGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMER 115

[Close]

BLAST of MELO3C027857 vs. ExPASy Swiss-Prot
Match: Q6YW62 (ABC transporter G family member 44 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG44 PE=2 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 4.0e-06
Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 14  DILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR 52
           D+  LGFQ+RK+L+E L+ VAE+D+E FLLKL+ R+DR
Sbjct: 89  DVAGLGFQERKHLLERLVRVAEEDHESFLLKLKQRIDR 126

[Close]

BLAST of MELO3C027857 vs. ExPASy Swiss-Prot
Match: Q8GU92 (ABC transporter G family member 35 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG35 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-05
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 14  DILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR 52
           D+L LG Q+R+ L+E L+ VAE DNE+FLLKL+ R+DR
Sbjct: 93  DVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDR 130

[Close]

BLAST of MELO3C027857 vs. ExPASy Swiss-Prot
Match: Q8GU88 (ABC transporter G family member 39 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG39 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-05
Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 14  DILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR 52
           DI  LG Q+R+NLIE L+  AE+DNE+FLLKL++R++R
Sbjct: 74  DIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMER 111

[Close]

BLAST of MELO3C027857 vs. ExPASy TrEMBL
Match: A0A5D3BHG1 (Pleiotropic drug resistance protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16100G00010 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.0e-12
Identity = 51/106 (48.11%), Postives = 51/106 (48.11%), Query Frame = 0


Query: 1   MDLGIGGCSFRSN----------------------------------------------- 52
           MDLGIGGCSFRSN                                               
Sbjct: 1   MDLGIGGCSFRSNGSFRSIVVDGFSRSSLREEEDDEEALKWAAIEKLPTFRRLRKGLVTT 60

[Close]

BLAST of MELO3C027857 vs. ExPASy TrEMBL
Match: A0A0A0L875 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G550680 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.2e-09
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 14  DILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR 52
           DILKLGFQDRKNLIEMLL V EQDNEKFL+KLQ+RLDR
Sbjct: 66  DILKLGFQDRKNLIEMLLQVGEQDNEKFLIKLQDRLDR 103

[Close]

BLAST of MELO3C027857 vs. ExPASy TrEMBL
Match: A0A6J1KCS8 (pleiotropic drug resistance protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111492704 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-08
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 14  DILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR 52
           DIL LGFQDRKNLIE L+ VAE+DNEKFLLKLQNRLDR
Sbjct: 63  DILNLGFQDRKNLIEALIKVAEEDNEKFLLKLQNRLDR 100

[Close]

BLAST of MELO3C027857 vs. ExPASy TrEMBL
Match: A0A6J1GAN7 (pleiotropic drug resistance protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111452288 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-08
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 14  DILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR 52
           DIL LGFQDRKNLIE L+ VAE+DNEKFLLKLQNRLDR
Sbjct: 63  DILNLGFQDRKNLIEALIKVAEEDNEKFLLKLQNRLDR 100

[Close]

BLAST of MELO3C027857 vs. ExPASy TrEMBL
Match: A0A022R649 (ABC transporter domain-containing protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a025710mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 31/49 (63.27%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 3   LGIGGCSFRSNDILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR 52
           LG+GG S    D+  LGFQ+R +L+E L++VAEQDNEKFLLKL+NR+DR
Sbjct: 63  LGLGGVS-SEVDVKDLGFQERTDLLERLVNVAEQDNEKFLLKLKNRIDR 110

[Close]

BLAST of MELO3C027857 vs. TAIR 10
Match: AT1G59870.1 (ABC-2 and Plant PDR ABC-type transporter family protein )

HSP 1 Score: 46.6 bits (109), Expect = 6.9e-06
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 14  DILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR 52
           D+ KL  +DR+  I+M+  VAEQDNE+ L KL+NR+DR
Sbjct: 91  DVTKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDR 128

[Close]

BLAST of MELO3C027857 vs. TAIR 10
Match: AT3G16340.1 (pleiotropic drug resistance 1 )

HSP 1 Score: 46.2 bits (108), Expect = 9.1e-06
Identity = 20/38 (52.63%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 14  DILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR 52
           D+ KLG  DR+  I+ +  V E+DNEKFL K +NR+DR
Sbjct: 67  DVTKLGVDDRQKFIDSIFKVTEEDNEKFLKKFRNRIDR 104

[Close]

BLAST of MELO3C027857 vs. TAIR 10
Match: AT3G16340.2 (pleiotropic drug resistance 1 )

HSP 1 Score: 46.2 bits (108), Expect = 9.1e-06
Identity = 20/38 (52.63%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 14  DILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR 52
           D+ KLG  DR+  I+ +  V E+DNEKFL K +NR+DR
Sbjct: 67  DVTKLGVDDRQKFIDSIFKVTEEDNEKFLKKFRNRIDR 104

[Close]

BLAST of MELO3C027857 vs. TAIR 10
Match: AT1G15210.1 (pleiotropic drug resistance 7 )

HSP 1 Score: 45.1 bits (105), Expect = 2.0e-05
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 14  DILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR 52
           D+ KL  ++R+  I+M+  VAEQDNE+ L KL+NR+DR
Sbjct: 89  DVTKLDGEERQKFIDMVFKVAEQDNERILTKLRNRIDR 126

[Close]

BLAST of MELO3C027857 vs. TAIR 10
Match: AT1G15520.1 (pleiotropic drug resistance 12 )

HSP 1 Score: 45.1 bits (105), Expect = 2.0e-05
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 0


Query: 14  DILKLGFQDRKNLIEMLLHVAEQDNEKFLLKLQNRLDR 52
           DI KLGFQD K L+E L+ V + ++EK L KL+ R+DR
Sbjct: 74  DIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDR 111

The following BLAST results are available for this feature:

BLAST of MELO3C027857 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025760.1	1.0e-11	48.11	pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa] >TYJ97608....	[more]
XP_038878862.1	8.2e-09	89.47	LOW QUALITY PROTEIN: pleiotropic drug resistance protein 1-like [Benincasa hispi...	[more]
XP_031739292.1	1.1e-08	89.47	pleiotropic drug resistance protein 1 [Cucumis sativus] >KAE8650759.1 hypothetic...	[more]
XP_023524614.1	5.3e-08	86.84	pleiotropic drug resistance protein 1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6606776.1	5.3e-08	86.84	Pleiotropic drug resistance protein 1, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of MELO3C027857 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q76CU2	4.2e-08	71.05	Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum OX=4097 GN=PDR1 PE=2 ...	[more]
O24367	2.8e-07	57.78	Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrhiza OX=29656 GN=TUR2...	[more]
Q6YW62	4.0e-06	60.53	ABC transporter G family member 44 OS=Oryza sativa subsp. japonica OX=39947 GN=A...	[more]
Q8GU92	1.2e-05	60.53	ABC transporter G family member 35 OS=Oryza sativa subsp. japonica OX=39947 GN=A...	[more]
Q8GU88	1.2e-05	60.53	ABC transporter G family member 39 OS=Oryza sativa subsp. japonica OX=39947 GN=A...	[more]

BLAST of MELO3C027857 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BHG1	5.0e-12	48.11	Pleiotropic drug resistance protein 1-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0L875	5.2e-09	89.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G550680 PE=3 SV=1	[more]
A0A6J1KCS8	2.6e-08	86.84	pleiotropic drug resistance protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GAN7	2.6e-08	86.84	pleiotropic drug resistance protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A022R649	1.1e-06	63.27	ABC transporter domain-containing protein OS=Erythranthe guttata OX=4155 GN=MIMG...	[more]

BLAST of MELO3C027857 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G59870.1	6.9e-06	55.26	ABC-2 and Plant PDR ABC-type transporter family protein	[more]
AT3G16340.1	9.1e-06	52.63	pleiotropic drug resistance 1	[more]
AT3G16340.2	9.1e-06	52.63	pleiotropic drug resistance 1	[more]
AT1G15210.1	2.0e-05	52.63	pleiotropic drug resistance 7	[more]
AT1G15520.1	2.0e-05	55.26	pleiotropic drug resistance 12	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 42..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027857.1	MELO3C027857.1	mRNA